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12
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17
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3.8k
views
6 follow
News: A programming language for living cells [Cello]
dna sequence research language
updated 8 months ago by 41k • written 7.7 years ago by 11k
3
votes
3
replies
3.8k
views
News: A Tale Of Next Generation Sequencing Platforms: Ion Torrent, Pacific Biosciences And Illumina Miseq
sequencing
updated 9 months ago by 41k • written 11.3 years ago by 99k
7
votes
3
replies
3.8k
views
News: Visualizing genomic data: techniques and challenges. Our interview with Dr. Malachi Griffith, Dr. Obi Griffith and Mr. Zachary Skidmore (The Griffith…
R RNA-Seq genome NGSdata
updated 7 months ago by 41k • written 6.5 years ago by ★ 2.4k
51
votes
17
replies
3.7k
views
News: Biostars 3.0 is now under testing. It has groups, charms and other interesting features.
meta biostars
updated 9 months ago by 41k • written 8.7 years ago by 99k
3
votes
2
replies
3.7k
views
News: Course/Workshop: Informatics For Rna-Sequence Analysis (June, 2013)
RNA-seq
updated 9 months ago by 41k • written 10.9 years ago by 20k
12
votes
7
replies
3.7k
views
News: Welcome Ensembl REST with more endpoints!
ensembl rest-api
updated 9 months ago by 41k • written 9.2 years ago by ★ 5.2k
17
votes
9
replies
3.7k
views
News: My Ncbi Curriculum Vitae Web Application: Sciencv
ncbi
updated 9 months ago by 41k • written 10.2 years ago by 158k
33
votes
5
replies
3.6k
views
News: FINAL CALL: Epigenetics Workshop - DNA Methylation Data Analysis (some last seats available)
Epigenetics Workshop Bisulfite-Sequencing
updated 8 months ago by 41k • written 7.5 years ago by ▴ 460
0
votes
0
replies
3.6k
views
News: Journal Of Bioinformatics Research Studies- Call For Papers
publication biology
updated 9 months ago by 41k • written 9.7 years ago by • 0
9
votes
4
replies
3.6k
views
News: Conference Announcement - Camda 2013
conference classification
updated 9 months ago by 41k • written 10.9 years ago by ▴ 240
11
votes
2
replies
3.6k
views
News: Coursera: Computational Molecular Evolution
course
updated 9 months ago by 41k • written 10.6 years ago by 158k
14
votes
3
replies
3.6k
views
News: Updated: Conference/Symposium/Seminar/Workshop alert 2018-2019
seminar symposium conference
updated 6 months ago by 41k • written 5.6 years ago by 5.8k
5
votes
2
replies
3.6k
views
News: Tuesday 10/29 Live Tour Of New Features In Integrated Genome Browser 8
genome-browser RNA-seq ChIP-seq
updated 9 months ago by 41k • written 10.1 years ago by ★ 2.4k
6
votes
1
reply
3.5k
views
News: Symposium And Rna-Seq Data Analysis Workshop Charlotte May 13-14
RNA RNA-seq training
updated 9 months ago by 41k • written 9.7 years ago by ★ 2.4k
9
votes
5
replies
3.5k
views
News: SAMTOOLS 1.4 released
samtools
updated 7 months ago by 41k • written 6.7 years ago by 158k
5
votes
1
reply
3.5k
views
News: Broad Gatk Haplotypecaller Speed Improved 2-4 X By Cooperation With Intel, And Incremental Multi-Sample Calling Made Possible!
gatk variant-calling
updated 9 months ago by 41k • written 9.7 years ago by ★ 5.2k
27
votes
7
replies
3.5k
views
News: The Biostar Swarm: A Visualization
biostars
updated 9 months ago by 41k • written 10.8 years ago by 99k
0
votes
1
reply
3.4k
views
News: Workshop: Introductory Population Genomics: From Data to Inference
next-gen SNP R
updated 8 months ago by 41k • written 7.1 years ago by ★ 2.4k
2
votes
0
replies
3.4k
views
News: Bioinformatics Open Days 2Nd Edition - 14 And 15 Of March, 2013 At The University Of Minho, Campus Gualtar, Braga, Portugal.
conference
updated 9 months ago by 41k • written 10.9 years ago by ▴ 20
2
votes
0
replies
3.3k
views
News: Synthetic DNA/RNA Spike-in standards for NGS
RNA-Seq assay spike-in
updated 8 months ago by 41k • written 7.3 years ago by 136k
0
votes
2
replies
3.3k
views
News: Course: Practical GWAS using Linux and R. 23-27 October 2017, Berlin (Germany)
GWAS Linux R
updated 6 months ago by 41k • written 6.3 years ago by ★ 2.4k
5
votes
2
replies
3.3k
views
News: Summary of AGBT 2015
AGBT2015 AGBT
updated 8 months ago by 41k • written 8.8 years ago by ▴ 640
8
votes
1
reply
3.3k
views
News: LAST DAY TO REGISTER - NGS Workshop 2015: A Practical Introduction to NGS Data Analysis (Oxford, UK)
RNA-Seq workshop
updated 9 months ago by 41k • written 9.1 years ago by 10k
12
votes
8
replies
3.3k
views
News: 'Potential Rna-Dna Binding Site In Alu Repeat', Or 'Why Should I Allow Multiple Mapping Positions When Analyzing Chipseq Data?'
chipseq rna
updated 9 months ago by 41k • written 10.4 years ago by 10k
11
votes
0
replies
3.2k
views
News: BWA 0.7.11 is out, supports ALT contigs
BWA
updated 9 months ago by 41k • written 9.0 years ago by 104k
14
votes
5
replies
3.2k
views
News: Science Article On Social Influence Bias On Voting Patterns ("Herding") With Impact On Biostar.
meta biostars
updated 9 months ago by 41k • written 10.3 years ago by 53k
12
votes
0
replies
3.2k
views
News: Looking For Feedback On The Json Output For Ncbi E-Utilities
ncbi eutils
updated 9 months ago by 41k • written 11.1 years ago by ▴ 360
4
votes
3
replies
3.2k
views
News: CAFE v4.0 available
phylogenetics CAFE
updated 7 months ago by 41k • written 6.7 years ago by ▴ 150
2
votes
0
replies
3.2k
views
News: Promoter Design Challenge: Design A Plant Promoter And We Will Construct It.
plant-promoter transcription-factor
updated 9 months ago by 41k • written 10.8 years ago by ▴ 20
2
votes
0
replies
3.2k
views
News: "Practical GWAS Using Linux and R" Workshop
GWAS Linux R next-gen
updated 6 months ago by 41k • written 6.4 years ago by ★ 2.4k
3
votes
0
replies
3.2k
views
News: Tumorportal - A Tool For Exploring A Pan-Cancer Dataset
tcga cancer-genomics
updated 9 months ago by 41k • written 9.8 years ago by 19k
9
votes
3
replies
3.2k
views
News: New Human Genome Assembly (Grch38) Released
human-genome assembly
updated 9 months ago by 41k • written 10.0 years ago by 158k
1
vote
1
reply
3.2k
views
News: Course: STATISTICS FOR BIOLOGISTS USING R. 18-22 September (Berlin)
statistics R
updated 7 months ago by 41k • written 6.9 years ago by ★ 2.4k
10
votes
17
replies
3.1k
views
7 follow
News: Tell us what you think of the ENA browser?
ena
updated 8 months ago by 41k • written 7.1 years ago by ★ 1.8k
0
votes
0
replies
3.1k
views
News: sRNAbench: profiling of small RNAs and its sequence variants in single or multi-species high-throughput experiments
webserver isomiRs microRNA small-RNA
updated 9 months ago by 41k • written 9.1 years ago by 10k
2
votes
0
replies
3.1k
views
News: Short Course And Workshop On Rna-Seq Analysis
RNA-seq
updated 9 months ago by 41k • written 9.9 years ago by ▴ 60
2
votes
2
replies
3.1k
views
News: Upcoming Hands-On NGS Data Analysis Workshops 2018
Mapping Workshop RNA-Seq Quality-Control DNA-Seq
updated 6 months ago by 41k • written 6.0 years ago by 10k
7
votes
1
reply
3.0k
views
News: A Multi-Split Mapping Algorithm For Circular Rna, Splicing, Trans-Splicing, And Fusion Detection
ngs mapping
updated 9 months ago by 41k • written 9.8 years ago by 10k
10
votes
1
reply
3.0k
views
News: Ucsc: Dna Sequences In Web Pages Indexed By Bing.Com / Microsoft Research (All Phenotype And Literature Tracks)
web ucsc
updated 9 months ago by 41k • written 9.9 years ago by 158k
4
votes
3
replies
3.0k
views
News: -max_target_seqs 1 in NCBI standalone BLAST does not do what you think it does
blast
updated 6 months ago by 41k • written 5.2 years ago by 11k
5
votes
0
replies
3.0k
views
News: Penn State now offers an Online Graduate Certificate: Applied Bioinformatics
bioinformatics-education
updated 9 months ago by 41k • written 9.3 years ago by 99k
4
votes
2
replies
3.0k
views
News: NCBI NOW (Next generation sequencing Online Workshop) October 13 - 23 , 2015
NCBI DNA-Seq NGS RNA-Seq
updated 8 months ago by 41k • written 8.2 years ago by ★ 2.2k
13
votes
2
replies
3.0k
views
News: A Summary Of All Encode Related News On The Openhelix Blog: Encode Floods The News
encode
updated 9 months ago by 41k • written 11.3 years ago by 99k
3
votes
2
replies
3.0k
views
News: Bioinformatics On Windows And Windows Cloud
windows cloud
updated 9 months ago by 41k • written 11.1 years ago by ▴ 20
0
votes
1
reply
3.0k
views
News: Workshop: 16S rRNA gene Metabarcoding (Berlin. 3-7 April 2017)
next-gen alignment blast R
updated 7 months ago by 41k • written 6.8 years ago by ★ 2.4k
3
votes
0
replies
2.9k
views
News: Introduction to Python for Biologists and Advanced Python for Biologists courses
Python
updated 11 months ago by 41k • written 8.5 years ago by ★ 3.7k
2
votes
3
replies
2.9k
views
News: Summer Course On Analyzing Next-Generation Sequencing Data, June 10-20, Kellog Biological Station, Michigan State University
education
updated 9 months ago by 41k • written 10.9 years ago by 99k
22
votes
3
replies
2.9k
views
News: Biostar: 10,000 Question Milestone
meta
updated 9 months ago by 41k • written 10.6 years ago by 99k
11
votes
13
replies
2.9k
views
News: Ensembl datacentre shut-down: Friday 26th August - Tuesday 30th August 2016
Maintenance Ensembl
updated 8 months ago by 41k • written 7.3 years ago by ★ 2.3k
4
votes
0
replies
2.9k
views
News: New simulation dataset for 'A benchmark for RNA-seq quantification pipelines'
RNA-Seq
updated 8 months ago by 41k • written 7.5 years ago by ★ 2.5k
1,000 results • Page 2 of 20
Recent Votes
Answer: Can't install hisat2 with miniconda
Answer: Can't install hisat2 with miniconda
Answer: Can't install hisat2 with miniconda
Answer: iqtree vs raxml
Comment: which statistical test and which package for comapre datasets?
Answer: Bowtie 2 alignment
Answer: GO, KEGG, GSEA analysis with ~5 DEGs
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Comment: What apps can read large FASTQ files on Windows? by dsull ★ 5.1k
Why do you want to open up such a large file in a text editor? You're not really going to learn anything new from manually looking at milli…
Comment: Can't install hisat2 with miniconda by Ozymandeus ▴ 30
Thank you! This fixed the issue.
Comment: Tutorials for Spatial Transcriptomics by CTLong ▴ 50
Although I'm not that into ST, but personally, when I learn a new technology, I usually play around with the data that had already been gen…
Comment: Is interleaved Fastq files the same as interlaced fastq by GenoMax 136k
> SPAdes wants interlaced fastq and BWA-MEM wants interleaved fastq Both programs will accept separate paired-end files. The reads in the …
Comment: which statistical test and which package for comapre datasets? by LauferVA 3.8k
@414fa591 this question is in need of clarification, as @rpolicastro has already said. However, based on what you've written, ***the resea…
Comment: Bowtie 2 alignment by Elizabeth ▴ 30
Thank you so much. I'm getting comparable results now. Appreciate the quick response.
Comment: which statistical test and which package for comapre datasets? by rpolicastro 12k
You should explain your experiment in more detail, such as the hypothesis you are testing and the samples you have to test this.
Comment: which statistical test and which package for comapre datasets? by satva72 • 0
thanks for you comment. I think its possible if we compare the different dataset?! to show that distribution is different between datasets.
Comment: How to display a VCF/BCF file or stream as a paginated table in a python web fra by Jeremy Leipzig 22k
seqr now supports Hail but with a layer of elasticsearch. It does not support TileDB but in theory it could.
Comment: which statistical test and which package for comapre datasets? by Jeremy ▴ 860
I think you will need at least three replicates to be able to do statistics.
Comment: GetPileupSummaries intervals-list with Targeted Sequencing? by Pierre Lindenbaum 158k
> Asking for bed file is not a suitable option in the current scenario. ???????
Comment: GetPileupSummaries intervals-list with Targeted Sequencing? by Manuel Sokolov Ravasqueira ▴ 100
they only provided me the sorted.bam files aligned with hg19. I converted bam into fastq and started variant calling from there. Asking for…
Comment: GetPileupSummaries intervals-list with Targeted Sequencing? by Pierre Lindenbaum 158k
> kit is proprietary I can't imagine you get a targeted sequencing without having a BED file....
Comment: GetPileupSummaries intervals-list with Targeted Sequencing? by Manuel Sokolov Ravasqueira ▴ 100
thanks for the suggestion. how can i obtain the bedfile of my targets (kit is proprietary - can I obtain bed from fasta? if yes how?)
Comment: Is interleaved Fastq files the same as interlaced fastq by rpolicastro 12k
This may indicate that your R1 and R2 reads were processed in a way that didn't maintain the 1:1 order of matching forward and reverse read…
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