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News: Bioinformatics internships with Google Summer of Code 2019
intern Ensembl GSOC
updated 10 months ago by 43k • written 5.1 years ago by 23k
0
votes
0
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2.3k
views
News: Genomics Summer School- 6 weeks NGS Data Analysis Program
Data-Analysis Exome DNA-Seq RNA-Seq
updated 11 months ago by 43k • written 7.0 years ago by • 0
3
votes
5
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2.3k
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News: (18 August - "Enzyme Stability Prediction") A free webinar on on-going CAFA5 (Critical Assessment of Functional Annotation of proteins) challenge
gene-ontology CAFA protein
8 months ago by Alexander ▴ 220
0
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0
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2.3k
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News: Workshop on Machine Learning for Transcriptomics Data
next-gen RNA-Seq
updated 11 months ago by 43k • written 5.9 years ago by ▴ 340
5
votes
0
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2.2k
views
News: [UPDATED] Hands-On NGS Data Analysis Workshops 2019
NGS Bisulfite-Seq RNA-Seq DNA-Seq
updated 10 months ago by 43k • written 5.4 years ago by 11k
38
votes
7
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2.2k
views
News: 2 last seats available - 7th Berlin Summer School in NGS Data Analysis (September 4-8 in Berlin)
Transcriptomics DNA-Seq Variant-Calling RNA-Seq
8 months ago by David Langenberger 11k
0
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0
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2.2k
views
News: INTRODUCTION TO PYTHON FOR BIOLOGISTS
RNA-Seq next-gen-sequencing
updated 11 months ago by 43k • written 6.2 years ago by ▴ 110
0
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0
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2.2k
views
News: Course: Geometric Morphometrics. 5-9 March 2018, Berlin (Germany)
R Phylogenetics Geometric-Morphometics
updated 11 months ago by 43k • written 6.6 years ago by ★ 2.5k
0
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0
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2.2k
views
News: Eukaryotic metabarcoding Workshop. February 26th-March 2nd, 2018 in Berlin
USEARCH Obitools Metabarcoding
updated 11 months ago by 43k • written 6.5 years ago by ★ 2.5k
0
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0
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2.2k
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News: Bioinformatics, Statistics and R for Next Generation Sequencing Data Analysis
next-gen-sequencing
updated 11 months ago by 43k • written 6.5 years ago by ▴ 170
6
votes
7
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2.2k
views
News: NCBI wants to remove quality scores from SRA
quality-scores trimming Assembly genome SRA
updated 10 months ago by 43k • written 3.8 years ago by ▴ 40
1
vote
0
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2.2k
views
News: Masters In Biomedical Informatics / Bioinformatics, University of Southern California, Los Angeles, CA, USA
masters students
updated 11 months ago by 43k • written 6.4 years ago by ▴ 20
0
votes
0
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2.2k
views
News: Course "Assembly and Annotation of genomes"
Assembly RNA-Seq mapping genome annotation
updated 11 months ago by 43k • written 6.7 years ago by ★ 2.5k
1
vote
0
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2.2k
views
News: WORKSHOP - Data visualisation and manipulation using Python
RNA-Seq Data-visualisation next-gen gene python
updated 11 months ago by 43k • written 7.1 years ago by ▴ 110
1
vote
0
replies
2.2k
views
News: UniProtKB FASTA headers: Addition of NCBI taxonomy identifier
swiss-prot uniprot taxonomy fasta
updated 11 months ago by 43k • written 6.3 years ago by ★ 2.4k
1
vote
0
replies
2.2k
views
News: Course: Transposable elements. Berlin 23-27 April 2018
Trasposons genome alignment Assembly
updated 11 months ago by 43k • written 6.5 years ago by ★ 2.5k
0
votes
0
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2.2k
views
News: Training in Bioinformatics for Beginners @ NIH, USA, April 17-20, 2018
beginners training
updated 11 months ago by 43k • written 6.1 years ago by ▴ 140
0
votes
0
replies
2.1k
views
News: Structural Bioinformatics Training Workshop & Hackathon 2017 - Application of Big Data Technology and 3D Visualization
Structural-Bioinformatics Big-Data
updated 11 months ago by 43k • written 7.0 years ago by ▴ 110
0
votes
0
replies
2.1k
views
News: Workshop: Metagenomics, Metatranscriptomics, and multi'omics for microbial community studies (9-13 April 2018 in Berlin)
Metatranscriptomics omics metagenomics
updated 11 months ago by 43k • written 6.1 years ago by ★ 2.5k
6
votes
2
replies
2.1k
views
News: RNA-Seq Data Analysis Workshop in Leipzig, Germany (09 - 12 October 2017)
NGS RNA-Seq workshop
updated 11 months ago by 43k • written 6.8 years ago by 11k
0
votes
0
replies
2.1k
views
News: Introduction to Python for Biologists, 11-15 September 2017, Edinburgh
programming python workshop
updated 11 months ago by 43k • written 6.7 years ago by ★ 3.7k
0
votes
0
replies
2.1k
views
News: Course. Analysis of single cell RNA-seq data.5-9 February 2018 Berlin (Germany)
next-gen RNA-Seq
updated 11 months ago by 43k • written 6.3 years ago by ★ 2.5k
2
votes
0
replies
2.1k
views
News: Workshop 'Analysis of single cell RNA-seq data' . 5-9 February 2018
RNA-Seq scRNAseq
updated 11 months ago by 43k • written 6.5 years ago by ★ 2.5k
0
votes
0
replies
2.1k
views
News: Eukaryotic metabarcoding Workshop
USEARCH NGS obitools blast
updated 11 months ago by 43k • written 6.9 years ago by ★ 2.5k
10
votes
0
replies
2.1k
views
News: Pan-Cancer Analysis of RNA Binding Proteins in ~7000 tumor samples
Pan-Cancer mutations TCGA RNA-seq cancer-driver
updated 11 months ago by 43k • written 6.2 years ago by ▴ 860
6
votes
13
replies
2.1k
views
News: Ensembl reduced functionality: 10th March-16th April 2020
BLAT VEP Ensembl service
updated 10 months ago by 43k • written 4.2 years ago by ★ 2.4k
0
votes
0
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2.1k
views
News: Course: RADseq data analysis in Berlin (4-8/12/17)
RADseq Stacks
updated 11 months ago by 43k • written 6.5 years ago by ★ 2.5k
0
votes
2
replies
2.1k
views
News: RNA-Seq Data Analysis Workshop in Berlin, Germany (13 - 16 March 2018)
NGS RNA-Seq sequencing
updated 11 months ago by 43k • written 6.3 years ago by 11k
2
votes
3
replies
2.1k
views
News: PDX Models: Tumor-stroma interaction
transcriptome pdx R ChIP-Seq
updated 11 months ago by 43k • written 6.7 years ago by ▴ 70
0
votes
0
replies
2.0k
views
News: Workshop: RADseq data analysis in Berlin
next-gen genome SNP
updated 11 months ago by 43k • written 6.9 years ago by ★ 2.5k
0
votes
0
replies
2.0k
views
News: Introduction to Machine Learning Workshop
Machine-Learning Big-Data Python
updated 10 months ago by 43k • written 5.3 years ago by ★ 2.5k
0
votes
0
replies
2.0k
views
News: Course: Applied Statistics and Bioinformatics with R and Bioconductor. (Berlin, 22-26 January 2018)
BioConductor Biostatistics R
updated 11 months ago by 43k • written 6.6 years ago by ★ 2.5k
0
votes
0
replies
2.0k
views
News: Pine Biotech Public Data Analysis Projects
microbiome cancer genome sequence ngs
updated 11 months ago by 43k • written 6.7 years ago by ▴ 70
12
votes
4
replies
2.0k
views
News: #NGSchool2018 summer school in bioinformatics
NGSchool Personalised-Medicine Nanopore
updated 11 months ago by 43k • written 5.9 years ago by ▴ 290
1
vote
4
replies
2.0k
views
News: webserver of TCGA data www.tcgaportal.org
genome RNA-Seq TCGA gene
updated 11 months ago by 43k • written 5.9 years ago by ▴ 40
7
votes
11
replies
2.0k
views
News: Bringing the power of Big Data to biomedical researchers
NGS biomedical-research
updated 11 months ago by 43k • written 6.7 years ago by ▴ 100
0
votes
0
replies
2.0k
views
News: Metagenomics course. 9-13 April 2018
genome R Metagenomics
updated 11 months ago by 43k • written 6.2 years ago by ★ 2.5k
0
votes
2
replies
2.0k
views
News: Illumina iSeq 100 sequencer
firefly illumina iSeq100
updated 11 months ago by 43k • written 6.3 years ago by 141k
0
votes
1
reply
2.0k
views
News: Course: Introduction to GWAS (BERLIN)
GWAS R Python Snakemake
updated 10 months ago by 43k • written 4.5 years ago by ★ 2.5k
3
votes
0
replies
2.0k
views
News: Landscape Genomics course in Berlin (Germany). Registration deadline is next week
next-gen R Genomics SNP
updated 11 months ago by 43k • written 6.9 years ago by ★ 2.5k
3
votes
1
reply
2.0k
views
News: Precision Medicine Bioinformatics: From raw genome and transcriptome data to clinical interpretation (PMBI01)
next-gen assembly RNA-Seq gene
updated 11 months ago by 43k • written 6.2 years ago by ▴ 110
2
votes
1
reply
2.0k
views
News: Genomic Data Visualization and Interpretation Workshop
next-gen R genome RNA-Seq
updated 11 months ago by 43k • written 6.8 years ago by ★ 2.5k
1
vote
1
reply
1.9k
views
News: Bioinformatics Contest 2017. Results
contest
updated 11 months ago by 43k • written 7.0 years ago by ▴ 70
2
votes
0
replies
1.9k
views
News: Coding,data management and Shiny applications using RStudio for evolutionary biologists
coding data-management R shiny
updated 11 months ago by 43k • written 7.1 years ago by ▴ 110
8
votes
4
replies
1.9k
views
News: supporting vg users on biostars
variation-graph genome vg vgteam
updated 10 months ago by 43k • written 4.6 years ago by ★ 2.4k
4
votes
0
replies
1.9k
views
News: Bioinformatics education: biology-inspired bioinformatics with project-based learning
education RNA-seq
updated 11 months ago by 43k • written 6.0 years ago by ▴ 340
3
votes
0
replies
1.9k
views
News: Free Training in Bioinformatic analysis available with Pine Biotech T-BioInfo
RNA-Seq biotech next-gen-sequencing
updated 11 months ago by 43k • written 6.8 years ago by ▴ 70
0
votes
0
replies
1.9k
views
News: Course on "Introduction to Linux and workflows for biologists" in Berlin (7 spots left)
genome next-gen sequence Assembly
updated 11 months ago by 43k • written 6.9 years ago by ★ 2.5k
0
votes
0
replies
1.9k
views
News: LAST CALL: Epigenetics Workshop - DNA Methylation Data Analysis (some last seats available)
bisulfite NGS methylation workshop
updated 11 months ago by 43k • written 6.5 years ago by 11k
0
votes
0
replies
1.9k
views
News: Training in Bioinformatics for Beginners @ NIH, USA, Sep 11-14,2018
training beginners
updated 11 months ago by 43k • written 5.7 years ago by ▴ 140
895 results • Page 2 of 18
Recent Votes
Bedtools merge but only if intersection exists
Answer: Korean reference file
Comment: Korean human genome reference file
C: samtools sort bam file
A: samtools sort bam file
Answer: Downloaded pdb's on rcsb.org
Comment: Downloaded pdb's on rcsb.org
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Recent Replies
Comment: Korean human genome reference file by SeoGyun • 0
Thanks..... But I want to do imputation, so I have to make it as a vcf file, but the site only has a fatsa file....
Comment: miRNAs quantification using mirdeep2 tool by Ashok • 0
thank you for your reply https://github.com/rajewsky-lab/mirdeep2/blob/master/TUTORIAL.md i saw this github tutorial for miRNA quantifica…
Comment: Load a full GFF3 into annotation track using arrow (Apollo) by cmdcolin ★ 3.8k
Hi there, I let a developer know of this thread and they said they can check it out next week. Feel free to post to the https://github.com/…
Comment: How to get the reference panel for UKBB by 航太郎 • 0
Thanks for your guide!
Comment: Removing duplicates by joe ▴ 500
I'd try those OP @samuel recommends My guess is you're new to ONT, fast5 is the 'raw data' which is current over time...other than generat…
Comment: RNA seq differential expression analysis by swbarnes2 14k
No. Find a tutorial, try it, then if you have specific questions, ask of the galaxy help site.
Answer: Adding CB tag to bam file by swbarnes2 14k
Shouldn't you use PicardTools for this?
Comment: Downloaded pdb's on rcsb.org by Ram 43k
Sure. Or, one could do: bash try.bash "Homo sapiens" AHR | xargs -I v_pdb curl -s -o v_pdb.pdb https://files.rcsb.org/view/v_pdb.pdb
Comment: Downloaded pdb's on rcsb.org by iamsmor • 0
thank you so much
Comment: Downloaded pdb's on rcsb.org by GenoMax 141k
This may be the best option. Get the PDB ID's $ ./get.sh "Mus musculus" AHR 4M4X 5NJ8 5V0L 8H77 Then use `curl` to g…
Comment: Downloaded pdb's on rcsb.org by Ram 43k
It gives you the first 25 results though. I'll see if I can change that. EDIT: I've updated that number to 250. I'm hoping you won't need …
Comment: Downloaded pdb's on rcsb.org by iamsmor • 0
thank you very much
Answer: Downloaded pdb's on rcsb.org by Ram 43k
I'm going to build off of OP's query and give them a simple script: ```bash organism=$(echo $1 | sed 's/ /%20/g') gene=$2 curl -s https:/…
Comment: miRNAs quantification using mirdeep2 tool by GenoMax 141k
This question does not make complete sense. If you have your own data files why do you need deep sequencing reads? Genome (can be download…
Comment: Downloaded pdb's on rcsb.org by GenoMax 141k
For a non-programmer using the search builder link included above may be the best option. Even that is not very user friendly.
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