updated 6 months ago by
Ram
38k
•
written 7.5 years ago by
David Langenberger
9.9k
8
votes
0
replies
2.4k
views
1
vote
1
reply
2.4k
views
20
votes
3
replies
2.3k
views
2
votes
0
replies
2.3k
views
6
votes
1
reply
2.3k
views
0
votes
0
replies
2.3k
views
updated 7 months ago by
Ram
38k
•
written 7.3 years ago by
fiochettal
▴
10
1
vote
1
reply
2.3k
views
updated 8 months ago by
Ram
38k
•
written 7.9 years ago by
bastianxpfeifer
▴
50
3
votes
1
reply
2.3k
views
updated 24 days ago by
Ram
38k
•
written 10.1 years ago by
Pierre Lindenbaum
153k
25
votes
7
replies
2.3k
views
6 follow
updated 8 months ago by
Ram
38k
•
written 7.9 years ago by
Pierre Lindenbaum
153k
15
votes
4
replies
2.3k
views
updated 24 days ago by
Ram
38k
•
written 10.1 years ago by
Pierre Lindenbaum
153k
0
votes
0
replies
2.3k
views
updated 10 days ago by
Ram
38k
•
written 8.3 years ago by
andorjkiss
▴
40
2
votes
0
replies
2.3k
views
3
votes
0
replies
2.2k
views
updated 11 days ago by
Ram
38k
•
written 8.5 years ago by
Devon Ryan
103k
4
votes
0
replies
2.2k
views
updated 5 months ago by
Ram
38k
•
written 7.6 years ago by
sayonidas03
▴
100
4
votes
0
replies
2.2k
views
0
votes
0
replies
2.2k
views
updated 7 months ago by
Ram
38k
•
written 7.2 years ago by
Joseph Hughes
★
3.0k
1
vote
0
replies
2.2k
views
News:
APPLICATION DEADLINE IS DECEMBER 5 for Penn State Applied Bioinformatics Program – 100% Online
updated 10 days ago by
Ram
38k
•
written 8.3 years ago by
fiochettal
▴
10
0
votes
2
replies
2.2k
views
updated 7 months ago by
Ram
38k
•
written 7.3 years ago by
Istvan Albert
96k
18
votes
3
replies
2.2k
views
updated 8 months ago by
Ram
38k
•
written 6.1 years ago by
David Langenberger
9.9k
1
vote
1
reply
2.2k
views
4
votes
0
replies
2.2k
views
0
votes
0
replies
2.1k
views
updated 5 months ago by
Ram
38k
•
written 7.6 years ago by
Sean Davis
26k
4
votes
1
reply
2.1k
views
News:
ENCODE Users' Meeting
0
votes
1
reply
2.1k
views
0
votes
0
replies
2.1k
views
0
votes
0
replies
2.1k
views
3
votes
0
replies
2.1k
views
updated 24 days ago by
Ram
38k
•
written 10.1 years ago by
girlwithglasses
▴
280
7
votes
2
replies
2.1k
views
News:
Annotation of Zebrafish pri-miRNAs promoters and CAGE-seq detected active Drosha processing events.
updated 7 months ago by
Ram
38k
•
written 7.2 years ago by
Chirag Nepal
★
2.3k
0
votes
0
replies
2.1k
views
updated 16 days ago by
Ram
38k
•
written 9.0 years ago by
okko.clevert
▴
240
4
votes
0
replies
2.1k
views
updated 17 days ago by
Ram
38k
•
written 9.1 years ago by
jan.christian
▴
60
3
votes
3
replies
2.1k
views
2
votes
0
replies
2.1k
views
4
votes
1
reply
2.1k
views
written 8.6 years ago by
Ben
★
2.0k
6
votes
2
replies
2.0k
views
4
votes
3
replies
2.0k
views
9
votes
0
replies
2.0k
views
updated 11 days ago by
Ram
38k
•
written 8.5 years ago by
Istvan Albert
96k
6
votes
0
replies
2.0k
views
updated 10 months ago by
Ram
38k
•
written 8.0 years ago by
Istvan Albert
96k
0
votes
0
replies
2.0k
views
8
votes
0
replies
2.0k
views
updated 25 days ago by
Ram
38k
•
written 10.6 years ago by
Istvan Albert
96k
0
votes
0
replies
2.0k
views
updated 5 weeks ago by
Ram
38k
•
written 7.9 years ago by
grace.sdiwc
•
0
10
votes
7
replies
2.0k
views
1
vote
0
replies
2.0k
views
4
votes
1
reply
1.9k
views
updated 12 weeks ago by
Ram
38k
•
written 8.2 years ago by
Obi Griffith
20k
0
votes
9
replies
1.9k
views
updated 13 days ago by
Ram
38k
•
written 8.7 years ago by
Matt Shirley
10k
0
votes
2
replies
1.9k
views
updated 24 days ago by
Ram
38k
•
written 10.3 years ago by
David Langenberger
9.9k
0
votes
0
replies
1.9k
views
News:
MAY 10 DEADLINE: Apply to Penn State’s Grad Certificate in Applied Bioinformatics – 100% ONLINE
updated 9 months ago by
Ram
38k
•
written 8.0 years ago by
fiochettal
▴
10
2
votes
1
reply
1.9k
views
0
votes
1
reply
1.9k
views
updated 3 months ago by
Ram
38k
•
written 5.5 years ago by
bioinformatics.e
•
0
3
votes
0
replies
1.9k
views
2
votes
2
replies
1.9k
views
updated 19 days ago by
Ram
38k
•
written 9.5 years ago by
Pierre Lindenbaum
153k
Recent Votes
Recent Locations •
All
Hungary, 1 minute ago
Chile, 2 minutes ago
United States, 3 minutes ago
United Kingdom, 4 minutes ago
United States, 4 minutes ago
USA, 6 minutes ago
Bologna, 6 minutes ago
Recent Awards •
All
Popular Question to
santos48
▴
40
Popular Question to
ghataksnd
▴
10
Popular Question to
igorm
▴
20
Scholar to
colindaven
4.5k
Teacher to
Matthias Zepper
3.3k
Popular Question to
mohammedtoufiq91
▴
210
Popular Question to
MatthewP
★
1.2k
Recent Replies
Answer: samtools idxstats not removing ChrM
by
Jen
▴
40
![enter image description here][1]
I think I got it to work using "MT" rather than "ChrM" (code below)
samtools idxstats chipse…
Answer: how to get pfam id of proteins belonging to a particular family along with seque
by
GenoMax
126k
Visit: https://www.uniprot.org/uniprotkb?query=(taxonomy_id:9606)
Click on `customize columns`. Search with keyword `pfam` and check the…
Comment: how to get pfam id of proteins belonging to a particular family along with seque
by
Pierre Lindenbaum
153k
use the data in the download section ?
$ wget -qO - "https://ftp.ebi.ac.uk/pub/databases/interpro/current_release/protein2ipr.dat.gz" …
Comment: Problem in converting SAM to BAM file by DROP SEQ
by
benformatics
3.4k
i think picard is expecting read groups. you may need to add them:
https://gatk.broadinstitute.org/hc/en-us/articles/360037226472-AddOrRepl…
Comment: samtools idxstats not removing ChrM
by
benformatics
3.4k
i'm not sure this is doing what you expect?
you should try filtering your bam directly and then running idx stats
samtools view -h yo…
Comment: samtools idxstats not removing ChrM
by
Jeremy Leipzig
21k
can we see the output from this?
`samtools idxstats chipseq/results/bowtie2/PPARg/PPARg_Input_Rep1_aln_sorted.bam`
conversely just as an e…
Comment: Nextflow Stringtie: command not found Error
by
ATpoint
70k
It's bad practice to delete posts that received an answer ( = a user invested time - in this case me but it of course applies generally). D…
Comment: Converting an output de-novo transcriptome assembled with Trinity to a .gff3 fil
by
EkHe
•
0
Hi @juke34, if you're able, can you please clarify something for me (based on the answer you've given here)? Thanks a lot in advance. I als…
Answer: Practical Haplotype Graph -- Pathing Error
by
lcj34
▴
220
FYI - The latest PHG docker version (tag 1.4) has a fix for this issue.
Comment: Nextflow: No space left on device, process using output directory as input?
by
Maxime Garcia
▴
220
Nextflow should only link inputs (unless stated otherwise), so even if you use outdir as input it should not be much of an issue, but still…
Comment: Problem in converting SAM to BAM file by DROP SEQ
by
lieven.sterck
14k
Hi https://www.biostars.org/u/126271/,
welcome.
it might be good to add some more info on your "question". Now it only shows an error mes…
Comment: Trying to install Roary with Conda results in error message
by
tobiwan
•
0
Thank you for your answer
I'm using Ubuntu 22.04.2 LTS,
command line used: conda install roary. Or do you need a screenshot of the whole …
Comment: Nextflow: No space left on device, process using output directory as input?
by
colindaven
4.5k
Yes, don't use the outdir as an input. You might get infinite loops.
Comment: UnicodeDecodeError: 'utf-8' codec can't decode byte 0x8b in position 1: invalid
by
wangjincheng
•
0
I tried unzipped file, it shows the same error
Comment: UnicodeDecodeError: 'utf-8' codec can't decode byte 0x8b in position 1: invalid
by
Pierre Lindenbaum
153k
> use python package to load and analysis vcf.gz files
looks like it doesn't like gzipped file. Are you sure this software can read gzip…
Traffic: 2573 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6