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898 results • Page
4 of 18
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1.7k
views
News:
Bionformatics courses and Workshops in Berlin (Germany)
genome
sequence
R
SNP
rna-seq
updated 11 months ago by
Ram
43k • written 6.9 years ago by
carlopecoraro2
★ 2.5k
5
votes
2
replies
1.7k
views
News:
#scRNABIO & organoids meeting
single-cell-sequencing
microfluidics
organoids
updated 11 months ago by
Ram
43k • written 5.7 years ago by
aln
▴ 320
2
votes
3
replies
1.7k
views
News:
GCCBOSC 2018: A Bioinformatics Community Conference Call for Abstracts
Galaxy-Community-Conference
BOSC
GCC
updated 11 months ago by
Ram
43k • written 6.2 years ago by
Chris Fields
★ 2.2k
0
votes
0
replies
1.6k
views
News:
Final few places left for course "Bioinformatic using Linux"
next-gen
RNA-Seq
gene
genome
SNP
updated 11 months ago by
Ram
43k • written 6.6 years ago by
oliverhooker
▴ 60
0
votes
0
replies
1.6k
views
News:
Course: eDNA Metabarcoding in Canada
next-gen-sequencing
R
updated 11 months ago by
Ram
43k • written 5.6 years ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
1.6k
views
News:
Bias, robustness and scalability in single-cell differential expression analysis
RNA-Seq
updated 11 months ago by
Ram
43k • written 6.2 years ago by
Eric Lim
★ 2.1k
0
votes
0
replies
1.6k
views
News:
Training in Computational Drug Design and Discovery @NIH, USA, Dec. 12-15, 2017
discovery
training
computational-drug-design
updated 11 months ago by
Ram
43k • written 6.5 years ago by
AABI
▴ 140
0
votes
1
reply
1.6k
views
News:
Course: RADseq data analysis in Berlin (4-8/12/17). LAST CALL
STACKs
RADseq
updated 11 months ago by
Ram
43k • written 6.4 years ago by
carlopecoraro2
★ 2.5k
2
votes
2
replies
1.6k
views
News:
User-friendly Bioinformatics From RNA Seq to Biological Interpretation
machine-learning
RNA-seq
updated 11 months ago by
Ram
43k • written 5.8 years ago by
sahil
▴ 10
0
votes
0
replies
1.6k
views
News:
Reproducible Bioinformatics Project
genome
ChIP-Seq
next-gen
R
rna-seq
updated 11 months ago by
Ram
43k • written 6.6 years ago by
raffaele.calogero
• 0
2
votes
1
reply
1.6k
views
News:
BIOSG17 Workshop on High Throughput Computing in Bioinformatics/Biomedicine using OSG
Workshop
OSG
Biomedicine
HTC
updated 11 months ago by
Ram
43k • written 6.7 years ago by
natasha.pavlovikj
▴ 10
1
vote
0
replies
1.6k
views
News:
Machine Learning and Visualization of High-Throughput Biomedical Data
next-gen-sequencing
gene
updated 11 months ago by
Ram
43k • written 5.9 years ago by
sahil
▴ 10
0
votes
0
replies
1.6k
views
News:
Phylogenetic Data Analysis In R - 28Jan-2Feb - FINALCALL
R
updated 11 months ago by
Ram
43k • written 6.4 years ago by
oliverhooker
▴ 110
0
votes
0
replies
1.6k
views
News:
Course. Analysis of single cell RNA-seq data.25 February-1 March 2019 in Berlin (Germany)
scRNAseq
RNA-Seq
updated 11 months ago by
Ram
43k • written 5.8 years ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
1.6k
views
News:
Analysis of single cell RNA-seq data Workshop
R
RNA-Seq
next-gen
updated 11 months ago by
Ram
43k • written 5.5 years ago by
carlopecoraro2
★ 2.5k
0
votes
5
replies
1.6k
views
News:
LAST CALL - 'Introduction to NGS Data Analysis' course in Berlin, October 8-10 2018
NGS
training
RNA-Seq
DNA-Seq
updated 11 months ago by
Ram
43k • written 5.9 years ago by
David Langenberger
11k
38
votes
8
replies
1.6k
views
6 follow
News:
What happens when a bioinformatician has his own genome sequenced for $300?
DNAseq
DNA
WGS
updated 10 months ago by
Alex Reynolds
35k • written 10 months ago by
David Langenberger
11k
0
votes
0
replies
1.6k
views
News:
Open Targets API upgrades to a new version, v3
API
webinar
drug
open-targets
updated 11 months ago by
Ram
43k • written 6.4 years ago by
Denise CS
★ 5.2k
0
votes
0
replies
1.6k
views
News:
16S/ ITS Metabarcoding course using QIIME2 platform
Metabarcoding
updated 11 months ago by
Ram
43k • written 5.2 years ago by
carlopecoraro2
★ 2.5k
0
votes
1
reply
1.6k
views
News:
:: FINALL CALL :: RNA-Seq Data Analysis Workshop for Beginners - Registraion to be closed
NGS
RNA-Seq
Training
updated 10 months ago by
Ram
43k • written 4.4 years ago by
David Langenberger
11k
0
votes
1
reply
1.6k
views
News:
A Personalized, Precise Approach to Fighting Cancer
biotech
cancer
sequencing
ChIP-Seq
RNA-Seq
updated 11 months ago by
Ram
43k • written 6.8 years ago by
Pine Biotech
▴ 70
2
votes
0
replies
1.6k
views
News:
4th Annual Viral Genomics & Bioinformatics Training Course (20-24 August 2018)
next-gen
virus
genomics
course
updated 11 months ago by
Ram
43k • written 6.3 years ago by
super
▴ 60
0
votes
0
replies
1.6k
views
News:
Course: Advanced Python for Biologists. Berlin (Germany). 13-17 November 2017
Python
NGS
updated 11 months ago by
Ram
43k • written 6.6 years ago by
c.pecoraro3486
▴ 20
0
votes
0
replies
1.6k
views
News:
Genome Assembly and Annotation Workshop
annotation
assembly
genome
updated 11 months ago by
Ram
43k • written 5.5 years ago by
carlopecoraro2
★ 2.5k
5
votes
1
reply
1.6k
views
News:
2-day WORKSHOP on SNAKEMAKE
next-gen
updated 11 months ago by
Ram
43k • written 5.9 years ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
1.6k
views
News:
Introduction to bioinformatics for DNA and RNA sequence analysis (IBDR01)
R
next-gen
RNA-Seq
genome
updated 11 months ago by
Ram
43k • written 6.0 years ago by
oliverhooker
▴ 60
9
votes
4
replies
1.6k
views
News:
Human Cell Atlas Data Coordination Platform Data Release Questionaire
RNA-Seq
updated 11 months ago by
Ram
43k • written 6.2 years ago by
Laura
★ 1.8k
0
votes
0
replies
1.6k
views
News:
Registration deadline for 2017 CBW bioinformatics workshops is fast approaching
SNP
ChIP-Seq
Assembly
RNA-Seq
R
updated 11 months ago by
Ram
43k • written 7.1 years ago by
meyer.ann
▴ 30
0
votes
1
reply
1.6k
views
News:
Trinity Workshop: De novo Transcriptome Assembly, Annotation, and Downstream Expression Studies. Berlin 12-16 June (4 places left)
next-gen
Assembly
RNA-Seq
updated 11 months ago by
Ram
43k • written 7.1 years ago by
carlopecoraro2
★ 2.5k
3
votes
1
reply
1.5k
views
News:
Bioconductor 2017 Conference, Boston, July 26-28
R
conference
Bioconductor
updated 11 months ago by
Ram
43k • written 7.1 years ago by
Sean Davis
26k
5
votes
2
replies
1.5k
views
News:
Google Dataset Search
google
updated 11 months ago by
Ram
43k • written 5.6 years ago by
Pierre Lindenbaum
161k
0
votes
1
reply
1.5k
views
News:
Symposium, Accelerating Biology 9-11, Jan, 2018 : Digitizing Life, Pune, India
symposium
NGS
updated 11 months ago by
Ram
43k • written 6.5 years ago by
lakhujanivijay
5.8k
13
votes
2
replies
1.5k
views
News:
Thank you Biostars!
meta
updated 11 months ago by
Ram
43k • written 5.0 years ago by
Glory Basumata
▴ 140
0
votes
0
replies
1.5k
views
News:
GWAS course
GWAS
R
updated 11 months ago by
Ram
43k • written 11 months ago by
carlopecoraro2
★ 2.5k
2
votes
0
replies
1.5k
views
News:
UCSC Genome Browser JSON API
ucsc
json
api
updated 10 months ago by
Ram
43k • written 4.8 years ago by
Pierre Lindenbaum
161k
0
votes
0
replies
1.5k
views
News:
Cell Lines: multi-omics network of associations to model precision treatment
next-gen
precision-medicine
gene
updated 11 months ago by
Ram
43k • written 6.8 years ago by
Pine Biotech
▴ 70
0
votes
0
replies
1.5k
views
News:
Final Week for Early Bird Prices: Engaging Researchers in Good Data Management - 15th November, Cambridge
conference
research
life-sciences
updated 11 months ago by
Ram
43k • written 6.5 years ago by
Sergio Martínez Cuesta
▴ 230
0
votes
0
replies
1.5k
views
News:
Course: Advanced Python for Biologists. Berlin (Germany). 13-17 November 2017
Python
updated 11 months ago by
Ram
43k • written 6.6 years ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
1.5k
views
News:
Introducing Omics Logic
NGS
cancer
clincial-research
updated 11 months ago by
Ram
43k • written 6.8 years ago by
Pine Biotech
▴ 70
0
votes
0
replies
1.5k
views
News:
WORK SHOP Bioinformatics for geneticists and biologists - final few places
Assembly
next-gen
blast
rna-seq
updated 11 months ago by
Ram
43k • written 6.9 years ago by
oliverhooker
▴ 110
0
votes
0
replies
1.5k
views
News:
BioVM 18.04 - call for testing and feedback
ubuntu
virtual-machine
linux
biovm
updated 11 months ago by
Ram
43k • written 6.0 years ago by
vimalkvn
▴ 320
0
votes
1
reply
1.5k
views
News:
Live Webinar on RNA-Seq Data Analysis on 28 Feb 2018
splice-variants
RNA-Seq
alignment
Strand-NGS
updated 11 months ago by
Ram
43k • written 6.2 years ago by
Genomics
▴ 70
4
votes
0
replies
1.5k
views
News:
All of Us (NIH) precision medicine research program is now open for enrollment
precision-medicine
updated 11 months ago by
Ram
43k • written 6.0 years ago by
GenoMax
141k
0
votes
0
replies
1.5k
views
News:
Introduction to Python for biologists
Programming
next-gen
updated 11 months ago by
Ram
43k • written 5.7 years ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
1.5k
views
News:
Optimizing Single-cell RNA-sequencing Workflows, A webinar hosted by Takara Bio and Formulatrix
clontech
single-cell
microfluidics
RNA-Seq
updated 11 months ago by
Ram
43k • written 7.1 years ago by
thomas.rawlins
• 0
8
votes
6
replies
1.5k
views
News:
Illumina to Acquire Pacific Biosciences
pacbio
illumina
updated 11 months ago by
Ram
43k • written 5.5 years ago by
Istvan Albert
100k
5
votes
0
replies
1.5k
views
News:
Bioinformatics in Google Summer of Code 2018
Ensembl
GSOC
updated 11 months ago by
Ram
43k • written 6.2 years ago by
Emily
23k
0
votes
0
replies
1.5k
views
News:
Eukaryotic metabarcoding (EUKB01)
Metabarcoding
updated 11 months ago by
Ram
43k • written 6.0 years ago by
oliverhooker
▴ 60
6
votes
0
replies
1.5k
views
News:
Now Live: precisionFDA Hidden Treasures - Warm Up Challenge
next-gen-sequencing
updated 11 months ago by
Ram
43k • written 6.8 years ago by
patriciareneecarter
▴ 90
0
votes
0
replies
1.5k
views
News:
Microbiome Data Analysis Using QIIME2 (MBQM01)
RNA-Seq
next-gen
updated 11 months ago by
Ram
43k • written 5.0 years ago by
oliverhooker
▴ 60
898 results • Page
4 of 18
Recent Votes
Answer: clustalo - align milions of short seq, memory issue
Comment: downloading genomes in fasta format from accession ids
Comment: PCA plot (Suggestions Needed)
Answer: PCA plot (Suggestions Needed)
PCA plot (Suggestions Needed)
Comment: To get p-values for the TPM
A: Where To Download Pam50 Gene Set?
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Comment: Why cd-hit-est not work when sequence identity threshold<0.95?
by
Dateline
• 0
So, why? I have 18GB of data, and when -c=0.95, the run ends in about two days, while when -c=0.9, it has been three days and only a little…
Answer: Heatmap and rna-seq
by
Kevin Blighe
87k
Hi, you can take the list of GSEA pathways and then use these via GSVA (https://github.com/rcastelo/GSVA) to create a heatmap. You hav…
Comment: Clustering of DAVID gene enrichment results from gene expression studies
by
Kevin Blighe
87k
You will have to elaborate on what is the error
Comment: clustalo - align milions of short seq, memory issue
by
emmanouil.a
▴ 120
Hi GenoMax and Mensur Dlakic, thank you for your feedback. I'm changing approach in the way to work with a smaller number of seq.
Comment: Annovar using R package
by
Pierre Lindenbaum
161k
duplicate of your previous question: https://www.biostars.org/p/9592646/ why using R when there are shell-based tools like VEP ? slivar , …
Comment: Trouble with Pilon installation
by
Lissa Cruz Saavedra
• 0
Hi I am trying to install the software but I didn't find the way to clone from github. Could you help me with the pipeline of instruction…
Comment: Adding CB tag to bam file
by
swbarnes2
14k
I think both these programs are just adding the same tag to every line. I don't think either cares whether it's called RG or CB
Comment: PCA plot (Suggestions Needed)
by
swbarnes2
14k
Even if this was real data, the tiny numbers for the PC1 and PC2 indicate that the differences between the samples are all absolutely tiny.…
Comment: Creating Synthetic Sequences for a ML Model
by
biochugs
• 0
Thanks for the input. I'll continue to think of more ideas that may be achievable.
Comment: PCA plot (Suggestions Needed)
by
Jeremy
▴ 890
You could also try kernel PCA, which is a non-linear form of PCA, although this will be more time-consuming.
Comment: Troubleshooting RNA-seq data with DNA contamination
by
DKA
▴ 40
I have unstranded RNA-seq data. Please share the tool with me, if you do not mind.
Comment: PCA plot (Suggestions Needed)
by
Mensur Dlakic
★ 27k
Everything that @f1f58aed said, plus that there may be no data manipulation that will give you the clusters you expected. Sometimes there a…
Answer: Creating Synthetic Sequences for a ML Model
by
Mensur Dlakic
★ 27k
It is a good idea, though I don't see how it would work in practice. I think you will encounter at least one additional problem on top of …
Answer: PCA plot (Suggestions Needed)
by
Jeremy
▴ 890
Right now, the WT samples are clustering together, but you have one mutant sample off by itself, which could be an outlier. How did you sc…
Comment: Adding CB tag to bam file
by
GenoMax
141k
@yokofakun had written this: https://www.biostars.org/p/336965/ https://github.com/ruqianl/appendCB may also be useful.
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