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898 results • Page 3 of 18
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3
votes
2
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735
views
News: NCBI BLAST+ 2.14.1 Now Available
NCBI BLAST
8 months ago by PeterC_NCBI ▴ 410
3
votes
5
replies
2.3k
views
News: (18 August - "Enzyme Stability Prediction") A free webinar on on-going CAFA5 (Critical Assessment of Functional Annotation of proteins) challenge
gene-ontology CAFA protein
8 months ago by Alexander ▴ 220
3
votes
1
reply
1.5k
views
News: Bioconductor 2017 Conference, Boston, July 26-28
R conference Bioconductor
updated 11 months ago by 43k • written 7.1 years ago by 26k
3
votes
0
replies
108
views
News: Interested in Spatial Omics?
Bioconductor Spatial-Omics Spatial-Transcriptomics
updated 1 day ago by 43k • written 1 day ago by ★ 2.5k
3
votes
2
replies
553
views
News: Announcement: Research Topic "Mechanistic, Machine Learning and Hybrid Models of the 'Other' Endocrine Regulatory Systems in Health and Disease", Vol…
mathematical-modelling endocrinology ML systems-biology machine-learning
26 days ago by Johannes W. Dietrich • 0
3
votes
0
replies
1.4k
views
News: NIH Strategic Plan for Data Science
nih data-science
updated 11 months ago by 43k • written 6.1 years ago by 141k
3
votes
1
reply
2.3k
views
News: NCBI : New API Keys for the E-utilities
pubmed eutils ncbi api
updated 11 months ago by 43k • written 6.5 years ago by 161k
3
votes
0
replies
1.9k
views
News: Deep learning in GATK4
GATK4 deep-learning GATK
updated 11 months ago by 43k • written 6.3 years ago by ★ 1.2k
3
votes
3
replies
1.2k
views
News: NCBI's IgBLAST version 1.21.0 is now available
IgBLAST BLAST T-Cell NCBI receptors
11 months ago by PeterC_NCBI ▴ 410
3
votes
1
reply
950
views
News: Results are now available for the precisionFDA NCI-CPTAC Multi-omics Enabled Sample Mislabeling Correction Challenge!
precisionFDA NCI challenge algorithm multi-omics
updated 11 months ago by 43k • written 5.2 years ago by ▴ 60
3
votes
0
replies
1.3k
views
News: Nextflow Training Course
Pipeline Workflow NEXTFLOW
updated 10 months ago by 43k • written 4.5 years ago by ★ 2.5k
3
votes
0
replies
1.0k
views
News: Free online Ensembl course
webinar Ensembl mooc training online
updated 11 months ago by 43k • written 5.7 years ago by 23k
2
votes
0
replies
665
views
News: Webinar in next hour : Updated BLAST RefSeq rRNA databases for identification and phylogenetic analysis
blast
updated 10 months ago by 43k • written 3.9 years ago by 141k
2
votes
2
replies
942
views
News: Interested in Machine Learning?
deep-learning machine-learning
updated 11 months ago by 43k • written 5.0 years ago by ★ 2.5k
2
votes
3
replies
1.4k
views
News: Bio-On-Magnetic-Beads (BOMB): Open platform for high-throughput nucleic acid extraction and manipulation
rna-extraction dna-extraction rna-seq
updated 11 months ago by 43k • written 5.6 years ago by ▴ 20
2
votes
1
reply
669
views
News: NGS & Microarray Custom Data Analysis Training Program
next-gen-sequencing RNA-Seq ChIP-Seq
updated 10 months ago by 43k • written 4.8 years ago by • 0
2
votes
0
replies
798
views
News: Course: RNA-seq Analyses in non-model organisms (Berlin 11-15 November 2019)
gene RNA-Seq next-gen
updated 10 months ago by 43k • written 4.9 years ago by ★ 2.5k
2
votes
0
replies
1.2k
views
News: Mendel,MD: A user-friendly open-source web tool for analyzing WES and WGS in the diagnosis of patients with Mendelian disorders
variant-prioritization mendelian-disorders
updated 11 months ago by 43k • written 6.9 years ago by ★ 1.4k
2
votes
0
replies
4.3k
views
News: Workshop: Analysis of single cell RNA-seq data
R next-gen RNA-Seq alignment
updated 11 months ago by 43k • written 6.8 years ago by ★ 2.5k
2
votes
1
reply
1.7k
views
News: Meet Dr. Giovanni Marco Dall'Olio
NGS training RNA-Seq
updated 11 months ago by 43k • written 5.1 years ago by 11k
2
votes
2
replies
2.6k
views
News: Interview Dealing with RADseq data: some tips from our instructors
NGS RADseq
updated 11 months ago by 43k • written 6.5 years ago by ★ 2.5k
2
votes
0
replies
757
views
News: Eukaryotic Metabarcoding course in Berlin. Last places left.
JAMP R metabarcoding Obitools
updated 10 months ago by 43k • written 4.3 years ago by ★ 2.5k
2
votes
0
replies
611
views
News: 2-day Nextflow training course in Berlin
workflow nextflow
updated 10 months ago by 43k • written 4.3 years ago by ★ 2.5k
2
votes
0
replies
1.1k
views
News: #NGSchool2019: Machine Learning for Biomedicine
ngschool workshop training summer-school next-gen
updated 11 months ago by 43k • written 5.0 years ago by ▴ 290
2
votes
0
replies
1.0k
views
News: Free Ensembl browser workshop: Hinxton, Cambridge, UK, 17 October 2018
training course ensembl workshop
updated 11 months ago by 43k • written 5.7 years ago by ▴ 330
2
votes
0
replies
1.7k
views
News: Course - Metabolomics - Berlin, 25-29 November 2019
Metabolomics R Bioconductor
updated 10 months ago by 43k • written 4.8 years ago by ★ 2.5k
2
votes
0
replies
541
views
News: Comparative Genomics course in Berlin
Assembly next-gen-sequencing alignment
updated 10 months ago by 43k • written 4.2 years ago by ★ 2.5k
2
votes
0
replies
119
views
News: Online Course Introduction to Network Analysis and Modelling
Python Network-Analysis
updated 13 days ago by 43k • written 13 days ago by ▴ 70
2
votes
0
replies
518
views
News: ONLINE COURSE-Advanced programming in R
R
updated 10 months ago by 43k • written 4.0 years ago by ★ 2.5k
2
votes
0
replies
672
views
News: Introduction to Deep Learning; ONLINE 28th September - 1st October
Machine-Learning Deep-Learning Python
updated 10 months ago by 43k • written 3.9 years ago by ★ 2.5k
2
votes
0
replies
849
views
News: The BioCompute Object App-a-thon is now live!
app-a-thon pipeline precisionFDA
updated 11 months ago by 43k • written 5.0 years ago by ▴ 150
2
votes
1
reply
1.1k
views
News: PrecisionFDA and NCI-CPTAC Mislabeling Challenge is Launching on September 24th!
precision-medicine NCI FDA proteomics.RNA
updated 11 months ago by 43k • written 5.6 years ago by ▴ 150
2
votes
0
replies
1.6k
views
News: 4th Annual Viral Genomics & Bioinformatics Training Course (20-24 August 2018)
next-gen virus genomics course
updated 11 months ago by 43k • written 6.3 years ago by ▴ 60
2
votes
1
reply
873
views
News: Gene set enrichment and pathway analysis in HT data
next-gen-sequencing RNA-Seq
updated 11 months ago by 43k • written 5.2 years ago by ★ 2.5k
2
votes
0
replies
957
views
News: GWAS course in Canada
GWAS
updated 11 months ago by 43k • written 5.2 years ago by ★ 2.5k
2
votes
0
replies
721
views
News: Speciation Genomics course in Canada (September 2019)
R SNP next-gen
updated 10 months ago by 43k • written 4.8 years ago by ★ 2.5k
2
votes
1
reply
2.0k
views
News: Genomic Data Visualization and Interpretation Workshop
next-gen R genome RNA-Seq
updated 11 months ago by 43k • written 6.8 years ago by ★ 2.5k
2
votes
0
replies
913
views
News: Interested in learning more about GWAS? Course in Canada this September
GWAS pipeline
updated 10 months ago by 43k • written 4.8 years ago by ★ 2.5k
2
votes
0
replies
969
views
News: Registration open for Galaxy Community Conference (GCC) 2019
galaxy
updated 11 months ago by 43k • written 5.1 years ago by 104k
2
votes
0
replies
3.3k
views
News: "Practical GWAS Using Linux and R" Workshop
GWAS Linux R next-gen
updated 11 months ago by 43k • written 6.8 years ago by ★ 2.5k
2
votes
0
replies
1.1k
views
News: Summer Courses @ Edinburgh Genomics
workshop training courses python RNA-Seq
updated 10 months ago by 43k • written 4.9 years ago by ▴ 40
2
votes
0
replies
2.3k
views
News: Course on "Genomic data visualisation and manipulation using Python"
genome next-gen RNA-Seq
updated 11 months ago by 43k • written 6.6 years ago by ▴ 60
2
votes
0
replies
696
views
News: Population Genomics course
R SNP next-gen
updated 10 months ago by 43k • written 4.2 years ago by ★ 2.5k
2
votes
0
replies
1.3k
views
News: Scalable and Reproducible Structural Bioinformatics Workshop & Hackathon 2018
Jupyter-Notebook structural-bioinformatics
updated 11 months ago by 43k • written 6.2 years ago by ▴ 50
2
votes
0
replies
767
views
News: Interested in learning more about Bayesian Statistics?
Bayesian-Statistics R Stan
updated 10 months ago by 43k • written 4.4 years ago by ★ 2.5k
2
votes
2
replies
518
views
News: Unix and Shell Scripting for Bioinformatics course
Bash Unix Shell-Scripting
4 months ago by carlopecoraro2 ★ 2.5k
2
votes
0
replies
814
views
News: Landscape Genomics course ONLINE
snp R next-gen
updated 10 months ago by 43k • written 4.1 years ago by ★ 2.5k
2
votes
6
replies
2.9k
views
News: Master in integrated systems biology / Luxembourg
systems-biology Masters-course
updated 11 months ago by 43k • written 6.8 years ago by ▴ 130
2
votes
0
replies
1.2k
views
News: Coming Soon precisionFDA Hidden Treasures Warm Up Challenge, July 18 - September 12, 2017
next-gen-sequencing
updated 11 months ago by 43k • written 6.8 years ago by ▴ 90
2
votes
0
replies
1.0k
views
News: Programmatic access uniprot.org: Deprecation of legacy REST URLs /batch and /mapping - please replace by /uploadlists
UniProt
updated 11 months ago by 43k • written 5.9 years ago by ★ 2.4k
898 results • Page 3 of 18
Recent Votes
Comment: alignment result
Comment: clustalo - align milions of short seq, memory issue
Answer: clustalo - align milions of short seq, memory issue
Comment: downloading genomes in fasta format from accession ids
Comment: PCA plot (Suggestions Needed)
Answer: PCA plot (Suggestions Needed)
PCA plot (Suggestions Needed)
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Recent Replies
Comment: To get p-values for the TPM by VITALA • 0
yes i want what rsem does and i did try with prior-enhanced option/pRSEM, but i think pRSEM is for chipseq data
Comment: alignment result by ahmad.sajad4541 • 0
Thank you so much. Should i proceed for annotation step?
Comment: PCA plot (Suggestions Needed) by swbarnes2 14k
The code you already posted in the bioconductor board had simulated data, and the PCA image is the same.
Answer: Network Alignment by Scooter ▴ 280
Unfortunately, it's not working for me either, and the web site doesn't exist anymore. You might try reaching out to the authors, but I kn…
Answer: How could I generate a gi_taxid_nucl.dmp file similar to the one previously host by ZhangYuanfeng • 0
JUST GIVE THE ANSWER! Here is the solution: ```bash aria2c -c -s 4 -j 4 \ https://ftp.ncbi.nlm.nih.gov/pub/taxonomy/accession2taxid/pd…
Comment: PCA plot (Suggestions Needed) by Aaliya ▴ 10
I have actually used DESeq2 data.
Comment: Why cd-hit-est not work when sequence identity threshold<0.95？ by Dateline • 0
So, why? I have 18GB of data, and when -c=0.95, the run ends in about two days, while when -c=0.9, it has been three days and only a little…
Answer: Heatmap and rna-seq by Kevin Blighe 87k
Hi, you can take the list of GSEA pathways and then use these via GSVA (https://github.com/rcastelo/GSVA) to create a heatmap. You hav…
Comment: Clustering of DAVID gene enrichment results from gene expression studies by Kevin Blighe 87k
You will have to elaborate on what is the error
Comment: clustalo - align milions of short seq, memory issue by emmanouil.a ▴ 120
Hi GenoMax and Mensur Dlakic, thank you for your feedback. I'm changing approach in the way to work with a smaller number of seq.
Comment: Annovar using R package by Pierre Lindenbaum 161k
duplicate of your previous question: https://www.biostars.org/p/9592646/ why using R when there are shell-based tools like VEP ? slivar , …
Comment: Trouble with Pilon installation by Lissa Cruz Saavedra • 0
Hi I am trying to install the software but I didn't find the way to clone from github. Could you help me with the pipeline of instruction…
Comment: Adding CB tag to bam file by swbarnes2 14k
I think both these programs are just adding the same tag to every line. I don't think either cares whether it's called RG or CB
Comment: PCA plot (Suggestions Needed) by swbarnes2 14k
Even if this was real data, the tiny numbers for the PC1 and PC2 indicate that the differences between the samples are all absolutely tiny.…
Comment: Creating Synthetic Sequences for a ML Model by biochugs • 0
Thanks for the input. I'll continue to think of more ideas that may be achievable.
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