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News: The Canadian Bioinformatics Workshops are back for summer 2023
CBW training workshop
3 hours ago by bioinformatics.ca • 0
730
votes
161
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108k
views
100 follow
News: The Biostar Handbook. A bioinformatics e-book for beginners.
training handbook
updated 13 days ago by 1.6k • written 6.3 years ago by 97k
0
votes
0
replies
69
views
News: Next-Generation Sequencing Data Analysis: A Practical Introduction (May 3-5, 2023 in Munich, Germany)
NGS DNA-Seq calling RNA-Seq workshop variant
11 hours ago by David Langenberger 9.9k
1
vote
0
replies
149
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News: NCBI's IgBLAST version 1.21.0 is now available
IgBLAST BLAST T-Cell NCBI receptors
updated 3 days ago by 127k • written 3 days ago by ▴ 210
0
votes
0
replies
143
views
News: ISMB-affiliated virtual tutorial on Neo4j/Cypher for life sciences
neo4j cypher graph knowledge
4 days ago by Stephen • 0
0
votes
0
replies
125
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News: Announcing workshop on Declarative Programming in Biology and Medicine (Seattle, Sept. 2023)
medicine declmed declarative icfp precision
4 days ago by Stephen • 0
0
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0
replies
92
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News: Course live online Introduction to Bayesian Analyses using R, May 8th-12th, 2023
bayesian RProject course online
5 days ago by Sole • 0
0
votes
0
replies
103
views
News: course - Reproducibility in Bioinformatics
Docker Reproducibility
updated 4 days ago by 38k • written 6 days ago by ★ 2.3k
0
votes
2
replies
300
views
News: Course - Metagenomics, metatranscriptomics, and multi'omics for microbial community Studies
Metagenomics Metatranscriptomics Multiomics
updated 10 days ago by 38k • written 10 days ago by ★ 2.3k
10
votes
4
replies
584
views
News: RNA-Seq Data Analysis Workshop - Join us in Berlin, Germany from March 27-30, 2023!
NGS transcriptomics workshop
updated 11 days ago by ▴ 30 • written 6 weeks ago by 9.9k
1
vote
0
replies
146
views
News: Summer School in Bioinformatics
Genomics Docker RNA-seq
updated 11 days ago by 38k • written 11 days ago by ★ 2.3k
1
vote
1
reply
249
views
News: Sign-ups for the St. Jude KIDS23 BioHackathon (May 3-5th) open through March 15th!
stjude hackathon
13 days ago by jared.andrews07 ★ 14k
1
vote
0
replies
159
views
News: Course - BIOINFORMATIC ANALYSIS OF TRANSPOSABLE ELEMENTS
Transposable-Elements TE Genome-Assembly
updated 11 days ago by 38k • written 14 days ago by ★ 2.3k
0
votes
0
replies
119
views
News: Environmental Metagenomics course
Environmental-Metagenomics
updated 19 days ago by 38k • written 19 days ago by ★ 2.3k
0
votes
0
replies
134
views
News: Course - GENERALIZED LINEAR MODELS in R
GLMs R GeneralisedLinearModels
20 days ago by carlopecoraro2 ★ 2.3k
1
vote
0
replies
190
views
News: Virtual Single Cell RNA-seq Workshop
single genomics cell expression rna-seq workshop gene
24 days ago by mia.nahom ▴ 10
1
vote
0
replies
193
views
News: Advanced Bayesian statistics in R course
Statistics RegressionModeling Bayesian R
25 days ago by carlopecoraro2 ★ 2.3k
0
votes
0
replies
120
views
News: Course - INTRODUCTION TO THE ANALYSIS OF LONGITUDINAL DATA WITH R
Genomics LongitudinalData R
27 days ago by carlopecoraro2 ★ 2.3k
1
vote
0
replies
209
views
News: The GDC Legacy Archive is retiring soon.
genomic-data-commons tcga gdc
updated 28 days ago by 38k • written 28 days ago by ▴ 750
0
votes
0
replies
197
views
News: course MULTIVARIATE DATA ANALYSIS WITH R AND VEGAN
Vegan MULTIVARIATEDATAANALYSIS Statistics R
4 weeks ago by carlopecoraro2 ★ 2.3k
0
votes
0
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159
views
News: course - single-cell RNAseq with R/Bioconductor
Bioconductor single-cell genomics RNAseq
updated 20 days ago by 38k • written 4 weeks ago by ★ 2.3k
0
votes
0
replies
272
views
News: Course - Analysis of PROKARYOTIC PANGENOMES
Genomics Pangenomes
updated 5 weeks ago by 38k • written 5 weeks ago by ★ 2.3k
5
votes
3
replies
388
views
News: March 13-16: Virtual Nextflow and nf-core training event in 5 languages
nf-core pipeline Nextflow
updated 7 days ago by ▴ 230 • written 5 weeks ago by 3.4k
0
votes
1
reply
147
views
News: Courses in March. -still a few seats available
Bioconductor Genomics R
updated 5 weeks ago by 38k • written 5 weeks ago by ★ 2.3k
0
votes
0
replies
162
views
News: course - Next steps in applied Bayesian regression modeling
Statistics RegressionModeling Bayesian R
5 weeks ago by carlopecoraro2 ★ 2.3k
0
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0
replies
205
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News: Introduction to GWAS course in June
GWAS R
updated 20 days ago by 38k • written 6 weeks ago by ★ 2.3k
0
votes
0
replies
208
views
News: Introduction to GWAS course (6th edition) - June, 5th-8th
GWAS R
updated 6 weeks ago by 38k • written 6 weeks ago by ★ 2.3k
0
votes
0
replies
141
views
News: Course - Version Control for Researchers
VersionControl GIT Github
7 weeks ago by carlopecoraro2 ★ 2.3k
0
votes
0
replies
272
views
News: Course - INTRODUCTION TO PYTHON PROGRAMMING FOR BIOLOGISTS
Programming Python
updated 6 weeks ago by 38k • written 7 weeks ago by ★ 2.3k
0
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0
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175
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News: Eukaryotic Metabarcoding course
eDNA Metabarcoding
updated 7 weeks ago by 38k • written 7 weeks ago by ★ 2.3k
0
votes
3
replies
338
views
News: NCBI update complete. Aspera users please update your client.
NCBI Submissions GenBank
6 weeks ago by PeterC_NCBI ▴ 210
0
votes
0
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163
views
News: Course - Mass Spectrometry and Proteomics in R/Bioconductor
Bioconductor MassSpectrometry R Proteomics
7 weeks ago by carlopecoraro2 ★ 2.3k
0
votes
0
replies
313
views
News: Course - Machine Learning in R (for omics data)
Genomics omics MachineLearning R
8 weeks ago by carlopecoraro2 ★ 2.3k
2
votes
0
replies
207
views
News: Course - Reproducibility in Bioinformatics
Reproducibility
updated 7 weeks ago by 38k • written 8 weeks ago by ★ 2.3k
0
votes
0
replies
160
views
News: course - Multivariate data analysis with R and vegan
Statistics MultivariateAnalysis R vegan
8 weeks ago by carlopecoraro2 ★ 2.3k
0
votes
2
replies
669
views
News: Online Course - A Practical Introduction to NGS Data Analysis (February 01-03, 2023)
NGS DNAseq variant-calling RNAseq
8 weeks ago by David Langenberger 9.9k
0
votes
0
replies
234
views
News: Bioinformatics courses in February
Genomics BioinformaticsTraining
8 weeks ago by carlopecoraro2 ★ 2.3k
0
votes
0
replies
543
views
News: Reminder: NCBI Aspera access, update Aspera Connect by Feb 1, 2023
Aspera NCBI SRA GenBank
9 weeks ago by PeterC_NCBI ▴ 210
1
vote
2
replies
367
views
News: Course: Network Analysis in R
NetworkAnalyis R
9 weeks ago by carlopecoraro2 ★ 2.3k
0
votes
0
replies
223
views
News: de novo RNA-seq Analysis Workshop
virtual workshop rna transcriptome
9 weeks ago by mia.nahom ▴ 10
0
votes
0
replies
267
views
News: Genomic Prediction course
Selective-Breeding Genomic-Prediction
updated 7 weeks ago by 38k • written 10 weeks ago by ★ 2.3k
1
vote
0
replies
336
views
News: course: Meta-analysis in R
Statistics MetaAnalysis R
10 weeks ago by carlopecoraro2 ★ 2.3k
0
votes
0
replies
309
views
News: GSEA in R/Bioconductor course
Bioconductor R GSEA GeneSetEnrichmentAnalysis
10 weeks ago by carlopecoraro2 ★ 2.3k
0
votes
0
replies
547
views
News: For NCBI Aspera access, update Aspera Connect by Feb 1, 2023
Aspera NCBI GenBank
10 weeks ago by PeterC_NCBI ▴ 210
0
votes
0
replies
248
views
News: Metabarcoding in Microbial Ecology
Metabarcoding Qiime2 16S MicrobialEcology R
10 weeks ago by carlopecoraro2 ★ 2.3k
0
votes
0
replies
241
views
News: Metagenomics tools recommeder system
NGS Metagenomics Recommender-system
updated 10 weeks ago by 38k • written 10 weeks ago by • 0
0
votes
0
replies
333
views
News: Hands-On NGS Data Analysis Workshops 2023
NGS Workshop RNA-Seq DNA-Seq
10 weeks ago by David Langenberger 9.9k
1
vote
5
replies
667
views
News: Cancer Genomics course - 2 seats left
Genomics Cancer-Genomics R
updated 7 weeks ago by 38k • written 11 weeks ago by ★ 2.3k
0
votes
0
replies
231
views
News: Course on Generalised Additive Models In R
Statistics GAMs R
11 weeks ago by carlopecoraro2 ★ 2.3k
0
votes
1
reply
403
views
News: Sex Chromosome Evolution course
Genomics Sex-Chromosome-Evolution
updated 7 weeks ago by 38k • written 11 weeks ago by ★ 2.3k
462 results • Page 1 of 10
Recent Votes
A: In Seurat, How Do nCount_RNA Differ from nFeature_RNA?
smoothing or binning bigWig file
List of Ongoing and Planned Long Read Sequencing studies?
Are We Rude/Do We Expect Too Much From People Asking Questions On This Forum?
Answer: Read lengths greater than insert length
A: Changing Output From Gene ID to Symbol When Running findMarkers from Scran
Answer: BLAST Database error: No alias or index file found for nucleotide database
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Recent Replies
Comment: Most efficient way to run Diamond against a very very large database (i.e., NCBI by cfos4698 ▴ 700
Keep in mind the potential effect on e-values brought about by splitting a database into chunks then combining the results, discussed here:…
Comment: split fasta file to train deep learning model by shenwei356 7.9k
Excluding sequences containing any letter not belonging to the 20 [amino acids letters](https://github.com/shenwei356/bio/blob/master/seq/a…
Comment: split fasta file to train deep learning model by pinheirofabiano ▴ 10
@shenwei356, thank you very much for your help, perfect! But now I realized that some fasta sequences contain the letter "B", which is ou…
Comment: Most efficient way to run Diamond against a very very large database (i.e., NCBI by Mensur Dlakic ★ 23k
I think it depends on the speed of your local disks and the memory amount. On a single node, breaking up the database doesn't sound like a …
Comment: Sample size for population genetics by Jeremy Leipzig 21k
Other populations just make the model harder to generalize, not easier.
Comment: Are We Rude/Do We Expect Too Much From People Asking Questions On This Forum? by Vincent Laufer ★ 2.5k
i think there is some of that - my most upvoted comment of all time was a dismissive comment i made while extremely tired. for context i ha…
Comment: Molecular biologist / clinical pharmacologist (f/m/d) by Jeremy ▴ 770
Is this job on site in Vienna or remote?
Comment: smoothing or binning bigWig file by rls_08 ▴ 40
if you use bigwigCompare , that would not create a sliding window, but instead, it will output the mean for each bin, according to the -bin…
Comment: Sample size for population genetics by zimmer.schweiz • 0
Thank you so much for your answer. For common polygenic diseases, would it make sense to increase the number of populations sampled, in ord…
Answer: Sample size for population genetics by Jeremy Leipzig 21k
For a rare penetrant monogenic disease? A few cases. For a common polygenic disease or trait? 500k-10M
Answer: using GRanges metadata to constrain overlap searches between objects by seidel 11k
Rather than do all overlaps all the time for all samples, why not restrict the data by sample when you can. The code below works about 4 ti…
Comment: How to get gene from PSIBLAST resuts by Tom • 0
Hello, thank you for your answer, I have a question, Why the information from the GFF file and from the feature table is different? I see …
Comment: SNP ID (rsID) to Chr no. and Position by Jewahir • 0
Yeah, thank you for that!!
Comment: 1000 genomes hg38 with dbSNP rsid by Ram 38k
It should be pretty straightforward. Just to save you some pain, run these on the 1000g VCF once you download it: 1. `vt decompose -s` to …
Comment: 1000 genomes hg38 with dbSNP rsid by Vince ▴ 150
Yeah, I had some hope that I wouldn't need to mess with doing this ...
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