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News: Introduction to Nextflow (2 seats left)
Nextflow Workflow Reproducibility
updated 11 weeks ago by 41k • written 11 weeks ago by ★ 2.4k
0
votes
0
replies
269
views
News: Genomic Prediction course
Genomic-Prediction GWAS
updated 9 weeks ago by 41k • written 11 weeks ago by ★ 2.4k
0
votes
0
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285
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News: course - Population Genomics Using Ancient DNA Data
Genomics aDNA Population-Genomics
updated 9 weeks ago by 41k • written 11 weeks ago by ★ 2.4k
3
votes
5
replies
1.1k
views
News: Ensembl Release 104 and newer GTF files no longer have genes sorted by position
Ensembl GTF
updated 12 weeks ago by ▴ 110 • written 12 months ago by ▴ 30
0
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0
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246
views
News: NCBI ClinVar XML update to accomodate somatic variants
SNP NCBI XML ClinVar
12 weeks ago by PeterC_NCBI ▴ 370
0
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0
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214
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News: Workshop on Virtual Screening on Drug Discovery from scratch (15-16 September, 2023 : 07.00 - 09.00 PM IST)
workshop virtual-screening
updated 8 weeks ago by 41k • written 12 weeks ago by • 0
0
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0
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231
views
News: RNAseq data analysis with R/Bioconductor
R RNA-seq Bioconductor
updated 9 weeks ago by 41k • written 12 weeks ago by ★ 2.4k
0
votes
0
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254
views
News: Course - RNAseq in non-model organisms
R Differential-Expression-Analysis RNA-seq Bioconductor
updated 9 weeks ago by 41k • written 3 months ago by ★ 2.4k
4
votes
2
replies
418
views
News: Standalone NCBI ClusteredNR database now available for download
ClusteredNR NCBI standalone BLAST
3 months ago by PeterC_NCBI ▴ 370
0
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0
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245
views
News: Virtual Variant Detection Workshop: September 11-14, 2023
tutorial detection genomics workshop variant
3 months ago by mia.nahom ▴ 10
0
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0
replies
238
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News: Introduction to Deep Learning for Biologists course
Python Deep-Learning Machine-Learning
updated 3 months ago by 41k • written 3 months ago by ★ 2.4k
0
votes
0
replies
233
views
News: Course - Reproducibility Data Analysis with R
R renv Version-Control Reproducibility
updated 9 weeks ago by 41k • written 3 months ago by ★ 2.4k
0
votes
0
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330
views
News: Online course: Easily analyze single cell RNA-seq data with Cellenics®, a user-friendly web-based platform
scRNA-seq training single-cell-RNA-seq
updated 3 months ago by 41k • written 3 months ago by • 0
0
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0
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378
views
News: Join Our Online Course: Incorporating Paleogenomes into Evolutionary Genomics Studies
Paleogenomics Genomics aDNA Adaptation-Genomics
updated 3 months ago by 41k • written 3 months ago by ★ 2.4k
0
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0
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249
views
News: Course on Phylogenomics
Phylogenetic-Inference Divergence-Time-Estimation Genomics Phylogenomics
updated 3 months ago by 41k • written 3 months ago by ★ 2.4k
0
votes
0
replies
272
views
News: Course. -Multivariate Data Analysis with R and vegan
R vegan MultivariateDataAnalysis
3 months ago by carlopecoraro2 ★ 2.4k
3
votes
2
replies
499
views
News: NCBI BLAST+ 2.14.1 Now Available
NCBI BLAST
3 months ago by PeterC_NCBI ▴ 370
1
vote
0
replies
223
views
News: Course - Introduction to CRISPR
CRISPR Evolution GenomeEditing
3 months ago by carlopecoraro2 ★ 2.4k
0
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0
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237
views
News: Upcoming Learning Opportunities and Important Updates
R Programming aDNA Paleogenomics
3 months ago by carlopecoraro2 ★ 2.4k
3
votes
5
replies
2.1k
views
News: (18 August - "Enzyme Stability Prediction") A free webinar on on-going CAFA5 (Critical Assessment of Functional Annotation of proteins) challenge
gene-ontology CAFA protein
3 months ago by Alexander ▴ 200
0
votes
0
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279
views
News: Spatial Omics course
Spatial-Omics Multiplexed-Image-Analysis
updated 9 weeks ago by 41k • written 3 months ago by ★ 2.4k
1
vote
0
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364
views
News: Generalized Additive Models in R
R GAMs Courses
4 months ago by carlopecoraro2 ★ 2.4k
0
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0
replies
240
views
News: NIAID Data Ecosystem Discovery Portal
databases data opendata api
4 months ago by ehaag ▴ 20
0
votes
0
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313
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News: Course - Structural Variant detection and comparison
SVs Structural-Variants
updated 4 months ago by 41k • written 4 months ago by ★ 2.4k
0
votes
0
replies
284
views
News: course -Developing R/Bioconductor Packages for Genomics
R Genomics Bioconductor
updated 4 months ago by 41k • written 4 months ago by ★ 2.4k
4
votes
3
replies
801
views
News: You may need to cleanup duplicate NCBI BLAST nt database volumes on your system
databases NCBI BLAST
3 months ago by PeterC_NCBI ▴ 370
0
votes
0
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306
views
News: Course - Data Visualization in R with ggplot2
R Data-Visualization ggplot2
updated 4 months ago by 41k • written 4 months ago by ★ 2.4k
38
votes
7
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1.9k
views
News: 2 last seats available - 7th Berlin Summer School in NGS Data Analysis (September 4-8 in Berlin)
Transcriptomics DNA-Seq Variant-Calling RNA-Seq
4 months ago by David Langenberger 10k
9
votes
4
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2.3k
views
7 follow
News: fastp 0.22 released, with new FASTQ deduplication feature.
fastp
updated 4 months ago by 41k • written 2.3 years ago by ★ 2.5k
0
votes
0
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370
views
News: Course - RADseq data analysis with Stacks
RADseq Phylogenomics Stacks Population-genomics
updated 4 months ago by 41k • written 4 months ago by ★ 2.4k
0
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0
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316
views
News: course - DNA METHYLATION IN ECOLOGY AND EVOLUTION
Non-Model-Organisms DNA-Methylation BS-seq
updated 4 months ago by 41k • written 4 months ago by ★ 2.4k
2
votes
0
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430
views
News: Registration open for Nextflow Summit 2023, and free online Nextflow / nf-core training
nextflow
5 months ago by Marcel Ribeiro-Dantas ▴ 450
0
votes
0
replies
326
views
News: 2-day Course on Introduction to Nextflow
Workflow Reproducibility Nextflow
updated 5 months ago by 41k • written 5 months ago by ★ 2.4k
0
votes
0
replies
294
views
News: Physalia courses in September
Genomics R Data-Science
updated 5 months ago by 41k • written 5 months ago by ★ 2.4k
0
votes
0
replies
350
views
News: Cellosaurus release 46
knowledgebase cell-line cellosaurus
5 months ago by Amos Bairoch ▴ 110
0
votes
0
replies
269
views
News: Course - Data Manipulation and Visualization in Python
Data-Manipulation Data-Visualisation Python
updated 5 months ago by 41k • written 5 months ago by ★ 2.4k
0
votes
0
replies
412
views
News: Kindle edition of book NO LONGER available. Book available for free
Computational-Biology
5 months ago by sinha.shriprakash ▴ 20
0
votes
0
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374
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News: Course on Generalised Linear Mixed Models in R
GLMM R Statistics Mixed-Models
updated 5 months ago by 41k • written 5 months ago by ★ 2.4k
0
votes
0
replies
366
views
News: Course - Network Analysis in Systems Biology with R/Bioconductor
R Systems-Biology Network-Analysis Bioconductor
updated 4 months ago by 41k • written 5 months ago by ★ 2.4k
0
votes
0
replies
278
views
News: course on Reproducibility data analysis with R
R Reproducibility Git Github
5 months ago by carlopecoraro2 ★ 2.4k
38
votes
8
replies
1.3k
views
6 follow
News: What happens when a bioinformatician has his own genome sequenced for $300?
DNAseq DNA WGS
updated 5 months ago by 35k • written 5 months ago by 10k
4
votes
0
replies
484
views
News: A Practical Introduction to Single-Cell RNA-Seq Data Analysis (November 8-10, 2023 in Berlin, Germany)
NGS RNA-Seq single-cell workshop
5 months ago by David Langenberger 10k
0
votes
0
replies
540
views
News: Hands-On NGS Data Analysis Courses 2023
RNA-seq DNA-seq Workshop
updated 5 months ago by 41k • written 5 months ago by 10k
1
vote
0
replies
349
views
News: Course - Introduction to Deep Learning for biologists
Genomics Deep-Learning Python NGS
updated 6 months ago by 41k • written 6 months ago by ★ 2.4k
1
vote
0
replies
354
views
News: Good bioinformatics training resources
NGS
updated 6 months ago by 158k • written 6 months ago by ▴ 80
0
votes
0
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430
views
News: Generalized Linear Models (GLM) course in R
R GLM statistics
6 months ago by carlopecoraro2 ★ 2.4k
0
votes
0
replies
397
views
News: course - Advanced Python programming
Python Deep-Learning Machine-Learning
updated 4 months ago by 41k • written 6 months ago by ★ 2.4k
3
votes
2
replies
584
views
News: Participate in a NCBI/NIAID Virtual Codeathon: VCF Files for Population Genomics, Jul 31 - Aug 4, 2023
VCF SARS-CoV-2 NCBI Codeathon
6 months ago by PeterC_NCBI ▴ 370
0
votes
0
replies
304
views
News: Virtual Genome Annotation Workshop
annotation genome workshop
6 months ago by mia.nahom ▴ 10
0
votes
0
replies
540
views
News: Course - Longitudinal data analysis in R
Longitudinal-Data R Genomics
updated 6 months ago by 41k • written 6 months ago by ★ 2.4k
1,000 results • Page 2 of 20
Recent Votes
Answer: Can't install hisat2 with miniconda
Answer: Can't install hisat2 with miniconda
Answer: Can't install hisat2 with miniconda
Answer: iqtree vs raxml
Comment: which statistical test and which package for comapre datasets?
Answer: Bowtie 2 alignment
Answer: GO, KEGG, GSEA analysis with ~5 DEGs
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Comment: Can't install hisat2 with miniconda by Ozymandeus ▴ 30
Thank you! This fixed the issue.
Comment: Tutorials for Spatial Transcriptomics by CTLong ▴ 50
Although I'm not that into ST, but personally, when I learn a new technology, I usually play around with the data that had already been gen…
Comment: Is interleaved Fastq files the same as interlaced fastq by GenoMax 136k
> SPAdes wants interlaced fastq and BWA-MEM wants interleaved fastq Both programs will accept separate paired-end files. The reads in the …
Comment: which statistical test and which package for comapre datasets? by LauferVA 3.8k
@414fa591 this question is in need of clarification, as @rpolicastro has already said. However, based on what you've written, ***the resea…
Comment: Bowtie 2 alignment by Elizabeth ▴ 30
Thank you so much. I'm getting comparable results now. Appreciate the quick response.
Comment: which statistical test and which package for comapre datasets? by rpolicastro 12k
You should explain your experiment in more detail, such as the hypothesis you are testing and the samples you have to test this.
Comment: which statistical test and which package for comapre datasets? by satva72 • 0
thanks for you comment. I think its possible if we compare the different dataset?! to show that distribution is different between datasets.
Comment: How to display a VCF/BCF file or stream as a paginated table in a python web fra by Jeremy Leipzig 22k
seqr now supports Hail but with a layer of elasticsearch. It does not support TileDB but in theory it could.
Comment: which statistical test and which package for comapre datasets? by Jeremy ▴ 860
I think you will need at least three replicates to be able to do statistics.
Comment: GetPileupSummaries intervals-list with Targeted Sequencing? by Pierre Lindenbaum 158k
> Asking for bed file is not a suitable option in the current scenario. ???????
Comment: GetPileupSummaries intervals-list with Targeted Sequencing? by Manuel Sokolov Ravasqueira ▴ 100
they only provided me the sorted.bam files aligned with hg19. I converted bam into fastq and started variant calling from there. Asking for…
Comment: GetPileupSummaries intervals-list with Targeted Sequencing? by Pierre Lindenbaum 158k
> kit is proprietary I can't imagine you get a targeted sequencing without having a BED file....
Comment: GetPileupSummaries intervals-list with Targeted Sequencing? by Manuel Sokolov Ravasqueira ▴ 100
thanks for the suggestion. how can i obtain the bedfile of my targets (kit is proprietary - can I obtain bed from fasta? if yes how?)
Comment: Is interleaved Fastq files the same as interlaced fastq by rpolicastro 12k
This may indicate that your R1 and R2 reads were processed in a way that didn't maintain the 1:1 order of matching forward and reverse read…
Comment: Is interleaved Fastq files the same as interlaced fastq by RCMC • 0
Sorry I accidentally hit enter BWA-MEM2 has occurring some error and states that paired reads have different names so I am trying to com…
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