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458 results • Page 2 of 10
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754
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News: New ebook: From cell line to Command line to learn computational biology
snakemake biology unix RNAseq computational
12 weeks ago by Ming Tommy Tang ★ 2.9k
0
votes
0
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358
views
News: Winter School in Bioinformatics - last seats available
Genomics Unix RNA-seq docker
updated 7 weeks ago by 38k • written 12 weeks ago by ★ 2.3k
0
votes
0
replies
239
views
News: Virtual RNA-seq Analysis (Model Organism) Workshop
virtual expression rna-seq analysis workshop
12 weeks ago by mia.nahom ▴ 10
0
votes
0
replies
273
views
News: Introduction to R Shiny course
WebApplications R RShiny
3 months ago by carlopecoraro2 ★ 2.3k
1
vote
0
replies
312
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News: New version of ElasticBLAST (1.0.0) available.
NCBI ElasticBLAST BLAST
3 months ago by PeterC_NCBI ▴ 200
0
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1
reply
305
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News: Courses in January - still a few seats available
R-Shiny Genomics Unix R
updated 7 weeks ago by 38k • written 3 months ago by ★ 2.3k
0
votes
0
replies
191
views
News: Sex Chromosome Evolution course
Genomics Sex-Chromosome-Evolution
updated 3 months ago by 38k • written 3 months ago by ★ 2.3k
0
votes
0
replies
239
views
News: Cellosaurus release 44 is available
cellosaurus cell-line
updated 3 months ago by 38k • written 3 months ago by ▴ 110
0
votes
0
replies
218
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News: Introductory video to the Cellosaurus
cellosaurus cell-line
updated 3 months ago by 38k • written 3 months ago by ▴ 110
0
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3
replies
502
views
News: Nvidia Clara Parabricks is FREE for R&D
nvidia workflow gpu
updated 3 months ago by 2.6k • written 3 months ago by 153k
2
votes
3
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340
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News: NCBI Comparative Genome Viewer now allows searches for genes across aligned assemblies
Browser NCBI Alignments Genome
3 months ago by PeterC_NCBI ▴ 200
1
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6
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685
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News: Course - FLOW CYTOMETRY ANALYSIS WITH R/BIOCONDUCTOR
Bioconductor FlowCytometry R
updated 9 weeks ago by ▴ 70 • written 3 months ago by ★ 2.3k
0
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0
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185
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News: INTRODUCTION TO ANALYTICAL PALEOBIOLOGY: FOSSIL RECORD BIASES, DIVERSITY, & BIOGEOGRAPHY
Biogeography Paleobiology R
3 months ago by carlopecoraro2 ★ 2.3k
1
vote
0
replies
197
views
News: Analysis of Cancer Genomes Using R and Bioinformatic Tools
Genomics Cancer-Genomics R
updated 3 months ago by 38k • written 3 months ago by ★ 2.3k
0
votes
0
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312
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News: course - GENOME ASSEMBLY USING OXFORD NANOPORE SEQUENCING
Long-reads Assembly Nanopore Genome
3 months ago by carlopecoraro2 ★ 2.3k
0
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0
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170
views
News: Online training - VERSION CONTROL FOR RESEARCHERS
Version Control Git Github
3 months ago by carlopecoraro2 ★ 2.3k
0
votes
1
reply
239
views
News: Research Training In NGS Data Analysis
analysis data-analysis
updated 3 months ago by 38k • written 3 months ago by • 0
0
votes
0
replies
281
views
News: Bayesian regression modeling in R course
RegressionModeling Bayesian R
3 months ago by carlopecoraro2 ★ 2.3k
0
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4
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456
views
News: Ensembl Release 104 and newer GTF files no longer have genes sorted by position
Ensembl GTF
updated 3 months ago by ★ 2.2k • written 4 months ago by ▴ 10
0
votes
0
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225
views
News: Genome Assembly and Annotation course
Annotation Nanopore GenomeAssembly Pacbio
4 months ago by carlopecoraro2 ★ 2.3k
3
votes
0
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959
views
News: Changes to the default NCBI BLAST nucleotide database (nt). Learn more and provide feedback!
NCBI Databases BLAST
4 months ago by PeterC_NCBI ▴ 200
0
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0
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234
views
News: Nextflow online training
Nextflow Workflow Reproducibility
updated 3 months ago by 38k • written 4 months ago by ★ 2.3k
0
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2
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951
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News: :: FINAL CALL :: Next-Generation Sequencing Data Analysis: A Practical Introduction (December 12-14, 2022 in Munich, Germany)
rnaseq dnaseq sequencing ngs workshop
4 months ago by David Langenberger 9.9k
0
votes
0
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266
views
News: The Association for Single Cell Analysis (ASCA)
genomics singlecell metabolomics sequencing proteomics
4 months ago by dnsv.ev • 0
0
votes
0
replies
218
views
News: Deep Learning in Population Genomics and Phylogeography
DeepLearning Phylogeography PopulationGenomics
4 months ago by carlopecoraro2 ★ 2.3k
0
votes
0
replies
231
views
News: Metabarcoding in Microbial Ecology Workshop
Qiime2 R Metabarcoding Microbial-Ecology
4 months ago by carlopecoraro2 ★ 2.3k
1
vote
2
replies
356
views
News: Gene Set Enrichment Analysis in R/Bioconductor
Gene-Set-Enrichment-Analysis R Cancer-Genomics GSEA
4 months ago by carlopecoraro2 ★ 2.3k
0
votes
0
replies
228
views
News: Analysis of RNA sequencing data with R/Bioconductor course.
Bioconductor RNAseq R
4 months ago by carlopecoraro2 ★ 2.3k
0
votes
0
replies
333
views
News: Winter School in Bioinformatics
course workshop
updated 3 months ago by 38k • written 4 months ago by ★ 2.3k
1
vote
0
replies
302
views
News: Introduction to Nextflow
Nextflow
updated 3 months ago by 38k • written 4 months ago by ★ 2.3k
0
votes
2
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455
views
News: Seascape Genomics in R
Genomics Seascape R
updated 3 months ago by 38k • written 4 months ago by ★ 2.3k
0
votes
0
replies
223
views
News: Bioinformatics courses in November
Bioconductor Genomics R
updated 3 months ago by 38k • written 5 months ago by ★ 2.3k
0
votes
0
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303
views
News: Flow cytometry analysis with R/Bioconductor course
Bioconductor R Cytometry Flow
5 months ago by carlopecoraro2 ★ 2.3k
0
votes
0
replies
226
views
News: course: RNA-seq analyses in non-model organisms
differential Bioconductor RNAseq expression non-model organisms analysis R
5 months ago by carlopecoraro2 ★ 2.3k
0
votes
0
replies
251
views
News: course - Developing R/Bioconductor packages for genomics
developing package Bioconductor Genomics R
5 months ago by carlopecoraro2 ★ 2.3k
2
votes
0
replies
264
views
News: Four NCBI workshops in October (BLAST, Primer-BLAST, Metagenome analysis, Structures in iCn3D)
metagenomics MagicBLAST BLAST NCBI Primer-BLAST
5 months ago by PeterC_NCBI ▴ 200
0
votes
0
replies
327
views
News: course - Unix and shell scripting for bioinformatics
bash Shell-scripting Unix
updated 3 months ago by 38k • written 5 months ago by ★ 2.3k
0
votes
0
replies
277
views
News: course: Data Visualization in Python
Visualisation Python Data
updated 5 months ago by 127k • written 5 months ago by ★ 2.3k
0
votes
0
replies
257
views
News: Seascape Genomics in R course
Genomics R Seascape Population
5 months ago by carlopecoraro2 ★ 2.3k
0
votes
0
replies
272
views
News: Cellosaurus API
line cell API
6 months ago by Amos Bairoch ▴ 110
0
votes
0
replies
273
views
News: Cellosaurus release 43 is available
cellosaurus cell-line
updated 3 months ago by 38k • written 6 months ago by ▴ 110
0
votes
0
replies
229
views
News: Genomics Webinar: Using Mastermind’s New ClinVar Integration to Accelerate Clinical Diagnoses
variant-interpretation genomics database webinar
updated 3 months ago by 38k • written 6 months ago by • 0
0
votes
0
replies
210
views
News: course: Population Genomic Inference from Low-coverage Whole-genome Sequencing Data
whole-genome genomics population low-coverage sequencing
updated 6 months ago by 21k • written 6 months ago by ★ 2.3k
0
votes
0
replies
216
views
News: :: FINAL CALL :: RNA-Seq Data Analysis Workshop (October 25 - 28, 2022 in Leipzig, Germany) - 2 seats left
RNA-Seq workshop transcriptomics
6 months ago by David Langenberger 9.9k
0
votes
0
replies
201
views
News: Getting the most out of R course - last call
ggplot2 R tidyverse
6 months ago by carlopecoraro2 ★ 2.3k
0
votes
0
replies
276
views
News: The NCTR Indel Calling from Oncopanel Sequencing Data Challenge Winners have been announced!
FDA-challenge
updated 3 months ago by 38k • written 6 months ago by ▴ 10
1
vote
0
replies
242
views
News: Webinar (free) on Multimodal Single-Cell Data from winner of NeurIPS 2021
ATAC-seq CITE-seq scRNA-seq
6 months ago by Alexander ▴ 70
1
vote
0
replies
251
views
News: course Reproducible Analysis With R
R Reproducibility analysis Data
6 months ago by carlopecoraro2 ★ 2.3k
0
votes
0
replies
275
views
News: Virtual Genome Assembly workshop
Genome Workshop assembly Virtual
6 months ago by singh.vijender ▴ 70
10
votes
4
replies
625
views
News: Good morning
good morning
updated 6 months ago by 97k • written 6 months ago by 84k
458 results • Page 2 of 10
Recent Votes
Comment: How to find promoter sequence of a gene?
Answer: BCFtools for somatic vs. germline variant calling
Answer: How to generate GFF/GTF file from cDNA transcipts FASTA file?
Comment: bioinformatics problems solved by graphs data structure
Comment: bioinformatics problems solved by graphs data structure
Answer: How to analize multiple letters codes in COG IDs?
Answer: PCA in gene expression
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Recent Replies
Comment: how to get to a VCF from bam files by Human • 0
Thanks a lot GenoMax and Ram! After a short look into that manual https://samtools.github.io/bcftools/howtos/variant-calling.html I went w…
Answer: BCFtools for somatic vs. germline variant calling by Ram 38k
bcftools does not differentiate. It calls variant loci. I don't think there's a single variant caller that calls both germline and somatic …
Comment: What means this Error when running a script in python?? by Ram 38k
Please format your code properly the next time. I've seen people use wrong formatting options to a reasonable extent, but your formatting w…
Comment: Gaia CNV error TCGA data by Ram 38k
1. Don't use people's names as tags. 2. Format your post properly. I've done what I can for now. 3. Add a link to "the tutorial from @kevin…
Comment: bioinformatics problems solved by graphs data structure by lieven.sterck 14k
et mon français est assez bien pour comprendre ce que tu as écrit la ;-)
Comment: How to analize multiple letters codes in COG IDs? by Constanza • 0
Thanks for answering so fast, it was very helpful. I shouldn't pay much attention to if COGs are separated by a comma or not then. As long…
Comment: bioinformatics problems solved by graphs data structure by lieven.sterck 14k
well, because this is not you guys' private forum, there are other people participating (not native french speaking) , just to give a reaso…
Answer: How to get gene from PSIBLAST resuts by lieven.sterck 14k
what you likely will need to do: 1. get the ID of the protein that you are interested in (out of result from PSIBLAST) 2. lookup that ID…
Answer: How to analize multiple letters codes in COG IDs? by Mensur Dlakic ★ 23k
The meaning of individual letters is described in a well-known COG functional code: https://ecoliwiki.org/colipedia/index.php/Clusters_o…
Comment: How to find promoter sequence of a gene? by sunyeping ▴ 40
The organism is mice.
Answer: How to generate GFF/GTF file from cDNA transcipts FASTA file? by Pierre Lindenbaum 153k
BLAT your cDNAs to the reference. This should be a PSL file that can be converted to a psl->gff3 converter (e.g: https://github.com/gperte…
Comment: RNAseq: same reads + more complete scaffold = fewer DEGs? by Darked89 4.2k
You may try to check what happened with DEGs obtained using the 300 fragments assembly by getting the sequences of these genes and comparin…
Comment: ExomeDepth installation error by Medha • 0
Thanks, that did work. Also in next steps, there are some arguments like bam.files, I was wondering do we require to have multiple bam fil…
Comment: ExomeDepth installation error by jared.andrews07 ★ 14k
No idea, I don't use databricks. I'd read the docs, find a local expert to help you out, or contact their support, likely in that order.
Comment: ExomeDepth installation error by Medha • 0
Hi @jaredandrews07 thanks for reverting back. I am new to R and just want to make sure ExomeDepth is working for the first time. For the Rs…
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