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News: Free draft copy of book on bioinformatics tools
alignment Assembly RNA-seq next-gen
updated 20 days ago by 38k • written 7.7 years ago by ★ 1.1k
0
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0
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1.9k
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News: MAY 10 DEADLINE: Apply to Penn State’s Grad Certificate in Applied Bioinformatics – 100% ONLINE
online-bioinformatics learn-bioinformatics
updated 8 months ago by 38k • written 7.9 years ago by ▴ 10
0
votes
1
reply
1.9k
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News: Call for Book Chapter- Essentials of Bioinformatics Vol. I-III (Springer)
medicine sequencing agriculture
updated 8 weeks ago by 38k • written 5.4 years ago by • 0
3
votes
0
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1.9k
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News: Big Data in Healthcare Symposium, Luxembourg, 28/29 October 2015
big-data conference medicine health
updated 4 months ago by 38k • written 7.5 years ago by ▴ 130
1
vote
0
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1.8k
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News: Computational Biology student/post doc In the UK or EU? Come to our Bioinformatics Student Symposium!
student sequencing genome symposium
updated 4 months ago by 38k • written 7.4 years ago by ▴ 10
0
votes
2
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1.8k
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News: NVIDIA GPU Conference sponsorship for Biostars + updated advertising terms
biostars meta
updated 9 months ago by 38k • written 8.0 years ago by 96k
2
votes
0
replies
1.8k
views
News: Workshop on Computational and Data Challenges in Genomic Sequencing
sequencing genome
updated 5 months ago by 38k • written 7.4 years ago by ▴ 20
2
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0
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1.8k
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News: NCI Up for a Challenge (U4C) in Breast Cancer Epidemiology
cancer-epidemiology
updated 7 weeks ago by 38k • written 7.6 years ago by 26k
0
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0
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1.8k
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News: Call for abstracts: Computational Toxicology symposium at 2015 ACS national meeting, Boston
AOP cheminformatics toxicogenomics
updated 9 months ago by 38k • written 7.9 years ago by ▴ 640
9
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6
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News: No more hidden solutions in bioinformatics
precision-medicine genome-sequencing
updated 20 days ago by 38k • written 7.7 years ago by ★ 1.2k
0
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4
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1.7k
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News: What NGS courses would you like us to prepare for 2016? (one week left)
NGS Survey Workshop
updated 6 months ago by 38k • written 7.2 years ago by 9.8k
8
votes
0
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1.7k
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News: New MOOC: Algorithms for DNA Sequencing
alignment Assembly genomics mooc
updated 3 months ago by 38k • written 7.5 years ago by ▴ 80
6
votes
1
reply
1.7k
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News: Contest: Antibody Marathon Match Problem: ABCSpeedup
contest News
updated 10 months ago by 38k • written 8.1 years ago by 152k
8
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0
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1.7k
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News: Please help! IGB grant and survey
igb ChIP-Seq RNA-Seq genome
updated 9 months ago by 38k • written 8.0 years ago by ★ 2.3k
4
votes
3
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1.7k
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News: Proteomics and Genomics Submit your Research Journals
Research Genomics Journals Proteomics
updated 9 weeks ago by 38k • written 7.6 years ago by • 0
2
votes
2
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1.7k
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News: BioC 2015, Bioconductor Annual Conference, July 20-22, Seattle, WA
Bioconductor Conference
updated 7 months ago by 38k • written 7.8 years ago by ★ 1.6k
3
votes
4
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1.7k
views
News: OmicCircos was updated
R OmicCircos
updated 8 months ago by 38k • written 7.9 years ago by ▴ 50
5
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0
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1.7k
views
News: The future of the postdoc
sequencing Postdoc
updated 7 months ago by 38k • written 7.8 years ago by ★ 1.2k
0
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0
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1.7k
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News: Informatics and Statistics on Metabolomics Workshop
workshop
updated 6 months ago by 38k • written 7.0 years ago by ▴ 30
0
votes
0
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1.6k
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News: Live webinar on Integrated Analysis using Metadata Framework and Correlation Analysis
proteomics genomics metabolomics transcriptomics
updated 8 months ago by 38k • written 7.9 years ago by ▴ 70
0
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0
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1.6k
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News: 8th National Symposium cum Workshop on Recent Trends in Structural Bioinformatics and Computer Aided Drug Design [SBCADD 2016]
SNP alignment sequence genome
updated 6 months ago by 38k • written 7.2 years ago by • 0
4
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1
reply
1.6k
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News: NCBI BLAST URL domain changes to take effect December 1, 2014
blast ncbi
updated 11 months ago by 38k • written 8.2 years ago by ★ 2.2k
1
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0
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1.6k
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News: Announcement: Workshop GATK Best Practices for Variant Discovery, 20-21 April 2015, Edinburgh, UK
SNP next-gen
updated 9 months ago by 38k • written 8.0 years ago by ★ 3.7k
0
votes
0
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1.5k
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News: Festival of Genomics, San Mateo 2015
dna genome event next-gen-sequencing
updated 3 months ago by 38k • written 7.5 years ago by • 0
8
votes
4
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1.5k
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News: supporting vg users on biostars
vg graph vgteam genome News variation
updated 7 weeks ago by 4.4k • written 3.4 years ago by ★ 2.3k
3
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0
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1.5k
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News: Human Genome Project: Twenty-five years of big biology
Human-Genome-Project
updated 5 months ago by 38k • written 7.4 years ago by 7.0k
0
votes
0
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1.5k
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News: The International Conference on Electronics and Software Science (ICESS2015)
conference wireless-communication
updated 1 day ago by 38k • written 7.8 years ago by • 0
0
votes
0
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1.5k
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News: Live Webinar on Streamlining large scale analysis using the Strand NGS Pipeline Manager on 24 Feb 2016.
RNA-Seq DNA-seq strand-ngs ChIP-Seq
updated 6 months ago by 38k • written 7.0 years ago by ▴ 70
0
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0
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News: ecSeq's RNA-Seq Experts - Prof. Dr. Ivo Hofacker
RNA-Seq NGS
updated 6 months ago by 38k • written 7.2 years ago by 9.8k
2
votes
0
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1.5k
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News: The Mozilla Fellowship for Science - Deadline Aug 14, 2015
open-science open-data
updated 4 months ago by 38k • written 7.5 years ago by 4.9k
1
vote
4
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1.4k
views
News: Bioconductor Development Visualization
bioconductor
updated 7 months ago by 38k • written 7.8 years ago by 26k
6
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0
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1.4k
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News: BOSC 2015 slides and videos
BOSC BOSC2015
updated 3 months ago by 38k • written 7.6 years ago by ★ 2.2k
3
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0
replies
1.4k
views
News: Restructuring the 1000 Genomes FTP site
sequencing SNP alignment
updated 4 months ago by 38k • written 7.4 years ago by ★ 1.8k
6
votes
13
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1.4k
views
News: Ensembl reduced functionality: 10th March-16th April 2020
Ensembl VEP BLAT service News
5 months ago by Ben_Ensembl ★ 2.2k
3
votes
0
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1.3k
views
News: Large scale cancer RNA-Seq study (more than 5k samples were analyzed in this study)
RNA-Seq cancer
updated 7 months ago by 38k • written 7.8 years ago by 9.8k
0
votes
0
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1.3k
views
News: Need help with your NGS data analysis?
experts NGS consulting
updated 4 months ago by 38k • written 7.4 years ago by 9.8k
0
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0
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1.3k
views
News: News: Bioinformatics workshop in Glasgow Summer 2018
glasgow workshop summer-school
updated 8 weeks ago by 38k • written 4.7 years ago by ▴ 40
0
votes
0
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1.2k
views
News: Request for Application - bioCADDIE Pilot Project on Harvester for DDI Schema
data-discovery harvester
updated 4 months ago by 38k • written 7.5 years ago by • 0
5
votes
1
reply
1.2k
views
News: Bioinformatics Contest 2017
Contest
updated 8 weeks ago by 38k • written 6.1 years ago by 7.0k
1
vote
1
reply
1.2k
views
News: Genomic Medicine Meeting VIII: NHGRI's Genomic Medicine Portfolio; livestream June 8-9
precision-medicine
updated 5 weeks ago by 38k • written 7.7 years ago by 11k
0
votes
0
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1.2k
views
News: EMBO Practical Course: Microbial Metagenomics
Genomic-technologies
updated 8 weeks ago by 38k • written 3.3 years ago by • 0
0
votes
0
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1.2k
views
News: Knowledge-Driven NGS Solutions
Epigenetics NGS DNA-Seq Data-Analysis RNA-Seq
updated 3 months ago by 38k • written 7.6 years ago by 9.8k
2
votes
0
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1.0k
views
News: Biotech Weekly - First issue is out! - Weekly curated news about all things biotech
biotech
updated 9 weeks ago by 38k • written 7.6 years ago by ▴ 30
0
votes
1
reply
1.0k
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News: 5th Berlin Summer School in NGS Data Analysis 2021 (October 4-8)
DNA-Seq Workshop RNA-Seq NGS
updated 3 hours ago by 38k • written 23 months ago by 9.8k
8
votes
1
reply
991
views
News: Clustered `nr` database is now available for web blast @NCBI
nr blast
updated 11 months ago by ★ 22k • written 12 months ago by 125k
0
votes
3
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947
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News: Less Than One Month Remaining until the Submission Deadline for Phase 1 of the NCTR Indel Calling from Oncopanel Sequencing Data Challenge!
oncopanel indel-calling
updated 8 weeks ago by 38k • written 7 months ago by ▴ 10
5
votes
0
replies
936
views
News: Bioinformatics Contest 2021
bioinfcontest contest bioinforussia
updated 3 hours ago by 38k • written 21 months ago by ▴ 50
0
votes
2
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903
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News: :: FINAL CALL :: Next-Generation Sequencing Data Analysis: A Practical Introduction (December 12-14, 2022 in Munich, Germany)
rnaseq dnaseq sequencing ngs workshop
12 weeks ago by David Langenberger 9.8k
3
votes
0
replies
878
views
News: Changes to the default NCBI BLAST nucleotide database (nt). Learn more and provide feedback!
NCBI Databases BLAST
11 weeks ago by PeterC_NCBI ▴ 180
0
votes
0
replies
854
views
News: Pre-Register for the NCTR Indel Calling from Oncopanel Sequencing Data Challenge with FDA’s National Center for Toxicological Research (NCTR) and pre…
oncopanel indel-calling
updated 8 weeks ago by 38k • written 9 months ago by ▴ 10
254 results • Page 2 of 6
Recent Votes
A: FindConservedMarkers vs FindMarkers vs FindAllMarkers Seurat
Comment: difference between chip-seq and association study
C: Ballgown Error in file(file, "rt") : invalid 'description' argument
Subbmission Data
Finding Reference Sequences And Interpretation Of Data From Repeatmasker Ucsc Tables
A: Finding Reference Sequences And Interpretation Of Data From Repeatmasker Ucsc Ta
C: extract and generate a VCF file with only "PASS"
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Popular Question to paria.alipour ▴ 70
Popular Question to O.rka ▴ 650
Teacher to GenoMax 125k
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Recent Replies
Comment: difference between chip-seq and association study by rheab1230 ▴ 120
okay, so in order to get a complete picture i can combine both of these methods?
Comment: Error with FindConservedMarkers() by Chris ▴ 60
Could other admins have a look?
Comment: What should I do if the gene IDs in my reference dataset and test dataset are di by paria.alipour ▴ 70
Here is the code that worked for me #read in the ref dataset reference <- readRDS("DR.rds") #convert ensemble id to gene symbol, I found …
Comment: WGCNA TOM calculation time by Michele • 0
Hi tothepoint! I know it's been a long time, but I couldn't find an answer to this question and I'm now having the same question. So do you…
Answer: How to find the difference between old and current releases in UniprotKB by GenoMax 125k
> For specific entry id, what it has changed from previous releases to > current releases. If you are talking about a specific UniProt …
Comment: NCBI search with ENTREZ biopython last refseq version tag by vkkodali_ncbi ★ 3.4k
Try `latest_refseq` instead of `latest refseq`. Or, use quotes for it, like this: `'Microbacterium[Organism] AND "latest refseq"[Filter] NO…
Answer: PyMOL: Gaps in protein structure yet shown by the sequence by Mensur Dlakic ★ 22k
Dashing lines indicate that at least one residue is missing in the structure, possibly more. If you search for `REMARK 465` in the PDB f…
Answer: How to find the difference between old and current releases in UniprotKB by Mensur Dlakic ★ 22k
Not sure that you realize how many sequences are in UniProtKB. I don't think there is a way of doing this in a reasonable amount of time by…
Comment: How to determine the optimal number of clusters? by seidel 10k
Do you have a definition of optimal? Do you have a context in which something can be more optimal or less optimal? Can you provide any more…
Comment: Subbmission Data by seidel 10k
GEO allows you to keep your data private for up to three years, AND has a mechanism where you can share it with reviewers without it being …
Comment: PyMOL: Gaps in protein structure yet shown by the sequence by spence.lank ▴ 10
The PDB ID for this structure is 7DK3 and the literature is here: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7775788/
Comment: Problem with tximport and plasmodium falciparum by ATpoint 69k
You do not do what I suggested above.
Comment: Relative frequencies of the nucleotides in Fasta files by xiaoleiusc ▴ 110
Hi, Hugo, I acknowledged you in my paper recently published. Thanks for your help! Xiao PS, paper link https://elifesciences.org/articles/8…
Comment: Stringtie prepDE.py script by Buffo ★ 2.0k
from the manual: -i a folder containing all sample sub-directories, or a text file with sample ID and path to its GTF file on each lin…
Comment: Using Entrez Utilities to query the Nucleotide database by collection_date by anomalous.lexeme • 0
That looks pretty useful. I'll give that a try as well. Thank you very kindly for the help.
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