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896 results • Page 2 of 18
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News: 2-day WORKSHOP on SNAKEMAKE
next-gen
updated 11 months ago by 43k • written 5.8 years ago by ★ 2.5k
5
votes
0
replies
990
views
News: Free online Ensembl REST API training
perl rest-api jupyter python ensembl
updated 11 months ago by 43k • written 5.4 years ago by 23k
5
votes
0
replies
1.8k
views
News: Bioinformatics Contest 2019
bioinforussia bioinfcontest bioinfcontest2019
updated 11 months ago by 43k • written 5.4 years ago by ▴ 50
4
votes
0
replies
1.2k
views
News: Workshop for genomic data visualization and interpretation
R RNA-Seq ggplot2 genomics
updated 11 months ago by 43k • written 5.3 years ago by 19k
4
votes
3
replies
3.3k
views
News: CAFE v4.0 available
phylogenetics CAFE
updated 11 months ago by 43k • written 7.1 years ago by ▴ 150
4
votes
0
replies
716
views
News: Call for Bioinformatics Papers - Genes Special Issue
gene
updated 10 months ago by 43k • written 4.3 years ago by ▴ 730
4
votes
2
replies
590
views
News: Standalone NCBI ClusteredNR database now available for download
ClusteredNR NCBI standalone BLAST
7 months ago by PeterC_NCBI ▴ 410
4
votes
2
replies
1.3k
views
News: Hands-On Workshop: How to use bisulfite-treated sequencing to study DNA methylation (BS-Seq, Bisulfite-Seq, WGBS)
Workshop methylation bisulfite
updated 10 months ago by 43k • written 4.6 years ago by ★ 1.0k
4
votes
0
replies
640
views
News: A Practical Introduction to Single-Cell RNA-Seq Data Analysis (November 8-10, 2023 in Berlin, Germany)
NGS RNA-Seq single-cell workshop
10 months ago by David Langenberger 11k
4
votes
4
replies
1.9k
views
News: 12th International Conference on Advancements in Bioinformatics and Drug Discovery
genome Computational-Biology
updated 11 months ago by 43k • written 6.0 years ago by ▴ 20
4
votes
3
replies
1.0k
views
News: You may need to cleanup duplicate NCBI BLAST nt database volumes on your system
databases NCBI BLAST
8 months ago by PeterC_NCBI ▴ 410
4
votes
0
replies
1.0k
views
News: SIG Workshop to discuss developments in computational pathology and its interfacing opportunities with bioinformatics during ECCB 2018
microscopy wsi digital-pathology
updated 11 months ago by 43k • written 5.7 years ago by ▴ 40
4
votes
2
replies
2.9k
views
News: New ebook: From cell line to Command line to learn computational biology
unix snakemake computational-biology RNA-seq
5 months ago by Ming Tommy Tang ★ 3.9k
4
votes
3
replies
3.2k
views
News: -max_target_seqs 1 in NCBI standalone BLAST does not do what you think it does
blast
updated 11 months ago by 43k • written 5.5 years ago by 11k
4
votes
0
replies
1.9k
views
News: Bioinformatics education: biology-inspired bioinformatics with project-based learning
education RNA-seq
updated 11 months ago by 43k • written 6.0 years ago by ▴ 340
4
votes
0
replies
1.4k
views
News: ONLINE course - Metagenomics, metatranscriptomics, and multi'omics for microbial community studies
next-gen-sequencing
updated 10 months ago by 43k • written 4.1 years ago by ★ 2.5k
4
votes
0
replies
4.0k
views
News: RepurposeDB - A New Reference Database of Drug Repositioning
precision-medicine drug-repositioning
updated 11 months ago by 43k • written 7.1 years ago by 18k
4
votes
1
reply
1.8k
views
News: Bioinformatics Contest 2018
contest
updated 11 months ago by 43k • written 6.3 years ago by ▴ 40
4
votes
0
replies
1.5k
views
News: All of Us (NIH) precision medicine research program is now open for enrollment
precision-medicine
updated 11 months ago by 43k • written 6.0 years ago by 141k
4
votes
0
replies
195
views
News: Transform Your Research with Our NGS Data Analysis Online Course!
DNAseq NGS Biologists OnlineCourse RNAseq
3 months ago by David Langenberger 11k
4
votes
1
reply
1.2k
views
News: Bioinformatics Workflows with Nextflow
Netflow reproducibility Workflows
updated 10 months ago by 43k • written 4.4 years ago by ★ 2.5k
4
votes
1
reply
1.8k
views
News: scRNA-seq data analysis Workshop in Berlin
RNA-Seq next-gen
updated 11 months ago by 43k • written 5.4 years ago by ★ 2.5k
4
votes
0
replies
1.1k
views
News: 2nd edition of the WORKSHOP on Genomic Data Visualization and Interpretation
R BioConductor DataViz
updated 11 months ago by 43k • written 5.6 years ago by ★ 2.5k
3
votes
0
replies
1.4k
views
News: NIH Strategic Plan for Data Science
nih data-science
updated 11 months ago by 43k • written 6.1 years ago by 141k
3
votes
1
reply
1.4k
views
News: GATK returns to a fully open-source license
gatk
updated 11 months ago by 43k • written 6.9 years ago by 100k
3
votes
2
replies
550
views
News: Announcement: Research Topic "Mechanistic, Machine Learning and Hybrid Models of the 'Other' Endocrine Regulatory Systems in Health and Disease", Vol…
mathematical-modelling endocrinology ML systems-biology machine-learning
24 days ago by Johannes W. Dietrich • 0
3
votes
0
replies
708
views
News: Testing and feedback of upcoming salmon release
salmon RNA-Seq
updated 10 months ago by 43k • written 4.6 years ago by 6.5k
3
votes
0
replies
1.8k
views
News: New web BLAST default parameters and search limits are now in place at NCBI
www-blast blast ncbi
updated 10 months ago by 43k • written 3.8 years ago by 141k
3
votes
2
replies
683
views
News: Participate in a NCBI/NIAID Virtual Codeathon: VCF Files for Population Genomics, Jul 31 - Aug 4, 2023
VCF SARS-CoV-2 NCBI Codeathon
11 months ago by PeterC_NCBI ▴ 410
3
votes
0
replies
806
views
News: Phylogenomics course in Berlin
snp R next-gen
updated 10 months ago by 43k • written 4.4 years ago by ★ 2.5k
3
votes
0
replies
1.9k
views
News: Deep learning in GATK4
GATK4 deep-learning GATK
updated 11 months ago by 43k • written 6.3 years ago by ★ 1.2k
3
votes
0
replies
1.1k
views
News: New command line tool for annotating variants, vai.pl
UCSC SNP VAI
updated 11 months ago by 43k • written 6.9 years ago by ▴ 580
3
votes
2
replies
1.3k
views
News: Genome Informatics meeting software list
meetings genomics informatics software
updated 11 months ago by 43k • written 6.5 years ago by 26k
3
votes
1
reply
1.4k
views
News: Ensembl in Google Summer of Code
Ensembl Internship Google-Summer-of-Code GSOC
updated 11 months ago by 43k • written 7.1 years ago by 23k
3
votes
3
replies
1.2k
views
News: NCBI's IgBLAST version 1.21.0 is now available
IgBLAST BLAST T-Cell NCBI receptors
11 months ago by PeterC_NCBI ▴ 410
3
votes
5
replies
1.3k
views
News: Ensembl Release 104 and newer GTF files no longer have genes sorted by position
Ensembl GTF
updated 7 months ago by ▴ 120 • written 17 months ago by ▴ 30
3
votes
2
replies
1.2k
views
News: Course "Data Crunching: from hell to heaven", Udine, Italy, 25-27 July, 2018
NGS next-generation-sequencing
updated 11 months ago by 43k • written 5.9 years ago by ★ 3.0k
3
votes
0
replies
294
views
News: NCBI BLAST+ 2.2.15 now available for download
NCBI Taxonomy BLAST
5 months ago by PeterC_NCBI ▴ 410
3
votes
0
replies
1.0k
views
News: Invitation to submit articles to the Bioconductor Gateway on F1000Research
bioconductor
updated 11 months ago by 43k • written 6.1 years ago by 26k
3
votes
1
reply
1.2k
views
News: UniProt: Change of FT and CC section in UniProtKB text format
uniprot protein
updated 10 months ago by 43k • written 4.6 years ago by ★ 2.4k
3
votes
1
reply
835
views
News: PrecisionFDA has won a FedHealth IT award!!
platform cloud-based precision-medicine award
updated 10 months ago by 43k • written 4.9 years ago by ▴ 150
3
votes
0
replies
781
views
News: ::FINAL CALL:: NGS Data Analysis for Beginners - 11-13 December 2019 in Munich, Germany (2 seats left)
NGS Workshop
updated 10 months ago by 43k • written 4.5 years ago by 11k
3
votes
0
replies
1.2k
views
News: Course on Programming for Evolutionary Biology
Evolution R genome Python
updated 11 months ago by 43k • written 5.4 years ago by ★ 2.2k
3
votes
1
reply
6.8k
views
News: LinkedOmics - a web portal for TCGA/CPTAC data
TCGA cptac cancer
updated 11 months ago by 43k • written 6.4 years ago by 141k
3
votes
2
replies
732
views
News: NCBI BLAST+ 2.14.1 Now Available
NCBI BLAST
8 months ago by PeterC_NCBI ▴ 410
3
votes
5
replies
2.3k
views
News: (18 August - "Enzyme Stability Prediction") A free webinar on on-going CAFA5 (Critical Assessment of Functional Annotation of proteins) challenge
gene-ontology CAFA protein
8 months ago by Alexander ▴ 220
3
votes
0
replies
1.0k
views
News: Free online Ensembl course
webinar Ensembl mooc training online
updated 11 months ago by 43k • written 5.7 years ago by 23k
3
votes
0
replies
538
views
News: gnomAD v4 released
gnomad
5 months ago by Pierre Lindenbaum 161k
3
votes
0
replies
1.9k
views
News: Free Training in Bioinformatic analysis available with Pine Biotech T-BioInfo
RNA-Seq biotech next-gen-sequencing
updated 11 months ago by 43k • written 6.8 years ago by ▴ 70
3
votes
1
reply
949
views
News: Results are now available for the precisionFDA NCI-CPTAC Multi-omics Enabled Sample Mislabeling Correction Challenge!
precisionFDA NCI challenge algorithm multi-omics
updated 11 months ago by 43k • written 5.2 years ago by ▴ 60
896 results • Page 2 of 18
Recent Votes
The Biostar Herald for Monday, April 15, 2024
The Biostar Herald for Monday, April 15, 2024
Filter BAM to keep only alignments at an interval, ignoring reads spliced over
Answer: Gene set enrichment analysis differences between 2020 and 2024
Answer: Fast way to extract specific sequences from large fasta
Answer: Fast way to extract specific sequences from large fasta
Comment: Intersect multiple BED files
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Comment: Using vg gamsort with naive sorting algorithm by Pierre Lindenbaum 161k
> Don't forget to follow up on your threads. If an answer was helpful, you should upvote it; if the answer resolved your question, you shou…
Comment: Redirection of Duplicate PMIDs by dominickd • 0
The scope is all publications related to grants from an NIH award program. There are currently ~120k publications in total (about a few hun…
Answer: Using vg gamsort with naive sorting algorithm by anovak ▴ 110
The `-d` sorting mode does the entire sort in memory, so it will only work if you have enough memory to load your whole GAM file. To fin…
Comment: Redirection of Duplicate PMIDs by dominickd • 0
I have a list of PMIDs for publications linked to a list of grants, exported from NIH RePORTER.
Comment: Plot DNA methylation level of DMR on the basis of certain genes by Pierre Lindenbaum 161k
> Don't forget to follow up on your threads. If an answer was helpful, you should upvote it; if the answer resolved your question, you shou…
Comment: Should I remove unlocalized scaffols in reference genome before alignment? by GenoMax 141k
Yes you can remove those if you are only interested in annotated genes.
Comment: Help for coding: Trinity for differential gene expression studies by mchour • 0
[This could help][1] [1]: https://github.com/trinityrnaseq/RNASeq_Trinity_Tuxedo_Workshop/wiki/Trinity-De-novo-Transcriptome-Assembly-W…
Answer: How to compare the quality of assemblies by colindaven 6.4k
Are you sure you have looked into the HiFiasm output files (fasta and GFA) in detail and excluded non-primary contigs, hap1, hap2 and other…
Answer: How to identify gaps in a genome? by colindaven 6.4k
You can use seqtk to find gaps in a fasta https://github.com/lh3/seqtk seqtk gap Usage: seqtk gap [-l 50] <in.fa>
Comment: some error in building kraken2 database by GenoMax 141k
> Obviously, running kraken2 after the build is complete does not produce the correct results What do you get instead? Error/no output? Ha…
Comment: Failed kmer content by GenoMax 141k
Can you post a screenshot of what you are referring to? Why did you choose to "clean" your data? FastQC analysis needs to be done keeping…
Comment: Help for coding: Trinity for differential gene expression studies by rhossen • 0
It should be great if I have any assistance in my build up command using trinity package...
Comment: Filter BAM to keep only alignments at an interval, ignoring reads spliced over by WouterDeCoster 47k
I want reads in a specific short interval, but if I do that with samtools view I also get reads that are spliced over that interval.
Answer: Help for coding: Trinity for differential gene expression studies by mchour • 0
Hello, I would recommend following RSEM wiki for more information about the options, or even run RSEM directly, not with the script provi…
Answer: WGCNA preservation analysis by Michael 54k
This seems like a model case for why we need better sustainable bioinformatics data and services. I don't know the exact background behind …
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