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1,000 results • Page 2 of 20
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11
votes
2
replies
3.5k
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News: Coursera: Computational Molecular Evolution
course
updated 7 months ago by 40k • written 10.3 years ago by 157k
11
votes
25
replies
5.4k
views
15 follow
News: Questions for the NCBI Next Generation Sequencing Online Workshop Can be Posted with the NCBI_NOW Tag
NCBI_NOW
updated 5 months ago by 40k • written 8.0 years ago by ▴ 330
11
votes
13
replies
2.7k
views
News: Ensembl datacentre shut-down: Friday 26th August - Tuesday 30th August 2016
Maintenance Ensembl
updated 5 months ago by 40k • written 7.1 years ago by ★ 2.3k
11
votes
1
reply
2.0k
views
News: Upcoming Hands-On Workshop: De Novo Transcriptome Assembly and Analysis
Workshop Assembly RNA-Seq
updated 5 months ago by 40k • written 7.3 years ago by 10k
11
votes
2
replies
1.4k
views
News: ASA discusses limitations of p-values what are the alternatives?
statistics p-value
updated 5 months ago by 40k • written 7.5 years ago by 14k
11
votes
11
replies
1.5k
views
8 follow
News: Python Data Visualization Course. Last 3 spots left
next-gen
updated 4 months ago by 40k • written 4.9 years ago by ★ 2.3k
10
votes
17
replies
3.0k
views
7 follow
News: Tell us what you think of the ENA browser?
ena
updated 5 months ago by 40k • written 6.9 years ago by ★ 1.8k
10
votes
1
reply
3.0k
views
News: Ucsc: Dna Sequences In Web Pages Indexed By Bing.Com / Microsoft Research (All Phenotype And Literature Tracks)
web ucsc
updated 6 months ago by 40k • written 9.7 years ago by 157k
10
votes
7
replies
2.2k
views
News: Free draft copy of book on bioinformatics tools
alignment Assembly RNA-seq next-gen
updated 8 months ago by 40k • written 8.4 years ago by ★ 1.1k
10
votes
0
replies
2.0k
views
News: Pan-Cancer Analysis of RNA Binding Proteins in ~7000 tumor samples
Pan-Cancer mutations TCGA RNA-seq cancer-driver
updated 4 months ago by 40k • written 5.7 years ago by ▴ 850
10
votes
4
replies
1.6k
views
News: 3rd Berlin Summer School in NGS Data Analysis (2 seats just became available)
NGS RNA-Seq DNA-Seq
updated 4 months ago by 40k • written 4.7 years ago by 10k
10
votes
0
replies
2.8k
views
News: Cfp: Camda 2013 Challenge: Big Data In Life Sciences
ngs conference
updated 7 months ago by 40k • written 10.5 years ago by ▴ 240
10
votes
1
reply
1.9k
views
News: Run on 1st Berlin Summer School in NGS Data Analysis
DNA-Seq RNA-Seq NGS
updated 5 months ago by 40k • written 6.6 years ago by 10k
10
votes
4
replies
979
views
News: RNA-Seq Data Analysis Workshop - Join us in Berlin, Germany from March 27-30, 2023!
NGS transcriptomics workshop
updated 6 months ago by ▴ 30 • written 7 months ago by 10k
9
votes
5
replies
8.4k
views
News: A New Rest Based Api For Kegg: Kyoto Encyclopedia Of Genes And Genomes
kegg api
updated 7 months ago by 40k • written 10.9 years ago by ▴ 50
9
votes
5
replies
10.0k
views
8 follow
News: Online course: Learn Bioinformatics in 100 hours
biostars online-course
updated 7 months ago by 40k • written 6.1 years ago by 98k
9
votes
0
replies
2.1k
views
News: Commercial advertising on Biostars
meta biostars advertising
updated 6 months ago by 40k • written 9.0 years ago by 98k
9
votes
4
replies
1.4k
views
News: Human Cell Atlas Data Coordination Platform Data Release Questionaire
RNA-Seq
updated 4 months ago by 40k • written 5.6 years ago by ★ 1.8k
9
votes
3
replies
3.1k
views
News: New Human Genome Assembly (Grch38) Released
human-genome assembly
updated 6 months ago by 40k • written 9.8 years ago by 157k
9
votes
4
replies
2.1k
views
7 follow
News: fastp 0.22 released, with new FASTQ deduplication feature.
fastp
updated 8 weeks ago by 40k • written 2.1 years ago by ★ 2.4k
9
votes
4
replies
3.5k
views
News: Conference Announcement - Camda 2013
conference classification
updated 7 months ago by 40k • written 10.7 years ago by ▴ 240
9
votes
6
replies
1.9k
views
News: No more hidden solutions in bioinformatics
precision-medicine genome-sequencing
updated 8 months ago by 40k • written 8.4 years ago by ★ 1.2k
9
votes
3
replies
4.6k
views
News: Bioinformatics Contest 2020. Call for problems
contest
updated 3 months ago by 40k • written 4.0 years ago by ▴ 860
9
votes
5
replies
3.4k
views
News: SAMTOOLS 1.4 released
samtools
updated 4 months ago by 40k • written 6.5 years ago by 157k
9
votes
9
replies
7.2k
views
News: NovaSeq quality analysis
sequencing
updated 4 months ago by 40k • written 6.3 years ago by 18k
8
votes
0
replies
1.2k
views
News: Final Call - Hands-On RNA-Seq Data Analysis Workshop - only 2 seats left
data-analysis RNA-Seq workshop
updated 3 months ago by 40k • written 4.2 years ago by 10k
8
votes
0
replies
2.7k
views
News: Plos Computational Biology: Translational Bioinformatics
publications plos
updated 7 months ago by 40k • written 10.6 years ago by 9.7k
8
votes
0
replies
1.7k
views
News: Upcoming Workshop: Introduction to R in Biology
workshop R
updated 5 months ago by 40k • written 6.6 years ago by 10k
8
votes
1
reply
2.6k
views
News: An Interesting Article On Bioinformatics Education With Some Press For Biostar
meta biostars
updated 7 months ago by 40k • written 10.2 years ago by 11k
8
votes
4
replies
1.7k
views
News: supporting vg users on biostars
variation-graph genome vg vgteam
updated 3 months ago by 40k • written 4.0 years ago by ★ 2.4k
8
votes
3
replies
1.7k
views
News: Impact of outdated gene annotations on pathway enrichment analysis
pathway-enrichment gene-ontology david go
updated 5 months ago by 40k • written 7.0 years ago by 5.1k
8
votes
1
reply
3.2k
views
News: LAST DAY TO REGISTER - NGS Workshop 2015: A Practical Introduction to NGS Data Analysis (Oxford, UK)
RNA-Seq workshop
updated 6 months ago by 40k • written 8.9 years ago by 10k
8
votes
6
replies
3.8k
views
News: Last Call: Upcoming Workshop - Rna-Seq Bioinformatics: A Practical Introduction
RNA-seq
updated 7 months ago by 40k • written 10.7 years ago by 10k
8
votes
6
replies
1.3k
views
News: Illumina to Acquire Pacific Biosciences
pacbio illumina
updated 4 months ago by 40k • written 4.9 years ago by 98k
8
votes
0
replies
2.1k
views
News: A Call To Create Listings Of The Best Review Papers
papers
updated 7 months ago by 40k • written 11.1 years ago by 98k
8
votes
8
replies
2.5k
views
News: Coronavirus Genome Analysis: a new volume in the Biostar Handbook
biostar-handbook education
updated 3 months ago by 40k • written 3.6 years ago by 98k
8
votes
2
replies
2.2k
views
News: The bioinformatics chat is a new podcast about bioinformatics. In the first episode we discuss Scallop, a transcriptome assembler
podcast Assembly RNA-Seq
updated 4 months ago by 40k • written 6.4 years ago by ▴ 120
8
votes
0
replies
1.8k
views
News: New MOOC: Algorithms for DNA Sequencing
alignment Assembly genomics mooc
updated 11 months ago by 40k • written 8.2 years ago by ▴ 80
8
votes
2
replies
790
views
News: Save time and money through improved onboarding of your NGS data scientists
NGS data-analysis
updated 6 months ago by 40k • written 3.7 years ago by 10k
8
votes
6
replies
17k
views
News: Bioinformatics PhD Programs in the US
education PhD
updated 4 months ago by 40k • written 5.8 years ago by ▴ 70
7
votes
8
replies
1.6k
views
News: A new Stack Exchange site for Research Computing
unix linux
updated 4 months ago by 40k • written 5.8 years ago by ▴ 690
7
votes
0
replies
1.9k
views
News: CIViC Hackathon and Curation Jamboree at NGS in Molecular Pathology Meeting, NKI, Nov 30 - Dec 2
meeting civic hackathon NKI
updated 5 months ago by 40k • written 7.1 years ago by ▴ 290
7
votes
3
replies
3.7k
views
News: Visualizing genomic data: techniques and challenges. Our interview with Dr. Malachi Griffith, Dr. Obi Griffith and Mr. Zachary Skidmore (The Griffith…
R RNA-Seq genome NGSdata
updated 4 months ago by 40k • written 6.2 years ago by ★ 2.3k
7
votes
0
replies
2.8k
views
News: Correction for "A benchmark for RNA-seq quantification pipelines"
RNA-seq
updated 5 months ago by 40k • written 7.3 years ago by ▴ 70
7
votes
0
replies
1.7k
views
News: Us Ethics Panel Reports On Dna Sequencing And Privacy
next-gen
updated 7 months ago by 40k • written 11.0 years ago by 11k
7
votes
1
reply
3.0k
views
News: A Multi-Split Mapping Algorithm For Circular Rna, Splicing, Trans-Splicing, And Fusion Detection
ngs mapping
updated 6 months ago by 40k • written 9.6 years ago by 10k
7
votes
2
replies
2.1k
views
News: Upcoming Hands-On Workshop: microRNA Analysis Using Next-Generation Sequencing
NGS microRNA workshop
updated 5 months ago by 40k • written 7.3 years ago by 10k
7
votes
0
replies
1.4k
views
News: First PacBio Sequel data available
pacbio sequel
updated 5 months ago by 40k • written 7.0 years ago by 134k
7
votes
11
replies
1.7k
views
News: Bringing the power of Big Data to biomedical researchers
NGS biomedical-research
updated 4 months ago by 40k • written 6.1 years ago by ▴ 100
7
votes
0
replies
905
views
News: New layout for NCBI BLAST FTP database site starting February 4, 2020
ftp blast blast_index blast-plus
updated 3 months ago by 40k • written 3.7 years ago by 134k
1,000 results • Page 2 of 20
Recent Votes
Human Genomics Team Leader
Comment: Low Alignment rate
Answer: Filter transcription factors
Answer: Filter transcription factors
Answer: Filter transcription factors
Comment: Integrated Seurat object change name of the two conditions
Comment: Integrated Seurat object change name of the two conditions
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Popular Question to adeizadavid ▴ 10
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Recent Replies
Answer: How to find the most representative protein data base ID for your protein? by GenoMax 134k
Option 1: Use MANE select proteins that you can download here (latest release as of today will keep changing) : https://ftp.ncbi.nlm.nih.g…
Comment: Should I Learn Docker to Run Command Line Bioinformatics Tool? by ATpoint 76k
Never tried, so idk. Why wouldn't it support it?
Comment: Should I Learn Docker to Run Command Line Bioinformatics Tool? by ATpoint 76k
I never tried conda images but since `mamba > conda` I guess mambaforge is better.
Comment: Filter human transcription factors by Chris ▴ 180
Thank you so much!
Comment: Filter human transcription factors by Chris ▴ 180
Yes, I do GO and GSEA to get pathway. I download the background gene at https://www.gsea-msigdb.org/gsea/msigdb/human/collections.jsp#C3 Th…
Answer: Visualize where kmers are on a reference genome by Alex Reynolds 35k
Make a bigBed file: https://www.biostars.org/p/9546293/ Then view it on the UCSC Genome Browser: http://genome.ucsc.edu/goldenPath/help/…
Comment: Integrated Seurat object change name of the two conditions by camillab. ▴ 130
great! thank you very much!
Answer: Filter transcription factors by jared.andrews07 ★ 15k
[This database](http://humantfs.ccbr.utoronto.ca/download.php) has been the best I've found.
Comment: Filter transcription factors by Ram 40k
What have you tried? Have you looked at GO annotations?
Comment: how to identify uniq genes between two gff files. by nikhil ▴ 10
yes @juke34 , I tried agat_sp_compare_two_annotations.pl for both gff files and got comparative output in table format. Thank you very muc…
Comment: Integrated Seurat object change name of the two conditions by Amitm ★ 2.2k
Yes, its similar structure. This snippet should add a new metadata column "sample.New" with what you want to do # Assuming a seurat obj. c…
Comment: Low Alignment rate by biofalconch ▴ 970
Yeap, you can sample your reads with `seqtk` like this: seqtk sample -s100 read2.fq 100 > Sample.fq Take a couple and run them throug…
Answer: obtaining circular RNAs' sequences from circBase by Barry Digby ★ 1.2k
You won't find them on circBase. circAtlas has the mature spliced sequence available. You can [search for circRNAs](https://ngdc.cncb.a…
Comment: Should I Learn Docker to Run Command Line Bioinformatics Tool? by Ram 40k
\#TIL mambaforge - better than continuum's conda images I'm guessing?
Comment: Should I Learn Docker to Run Command Line Bioinformatics Tool? by arriyaz.nstu ▴ 30
If the laptop doesn't support WSL2, then will the Docker (with linux) work?
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