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1,000 results • Page
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2
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News:
Webinar: Generating interpretable maps of single cell chromatin accessibility and RNA-seq datasets with Similarity Weighted Nonnegative Embedding
scRNAseq
webinar
rna-seq
single-cell
updated 10 months ago by
Ram
43k • written 4.9 years ago by
sonpham
▴ 580
7
votes
2
replies
2.2k
views
News:
Upcoming Hands-On Workshop: microRNA Analysis Using Next-Generation Sequencing
NGS
microRNA
workshop
updated 11 months ago by
Ram
43k • written 7.8 years ago by
David Langenberger
11k
2
votes
2
replies
1.4k
views
News:
GeNets: a unified web platform for network-based genomic analyses
networks
pathways
RNA-Seq
visualization
updated 10 months ago by
Ram
43k • written 5.8 years ago by
ivivek_ngs
★ 5.2k
0
votes
2
replies
1.9k
views
News:
Webinar: Multi-omics: Challenges, opportunities and application to biomarker discovery
biomarker
next-gen-sequencing
multiomics
cancer
updated 10 months ago by
Ram
43k • written 6.8 years ago by
Persistent LABS
▴ 750
2
votes
2
replies
1.3k
views
News:
Course: Applied Statistics and Bioinformatics with R and Bioconductor. (Berlin, 22-26 January 2018)
R
next-gen-sequencing
updated 10 months ago by
Ram
43k • written 6.4 years ago by
carlopecoraro2
★ 2.4k
3
votes
2
replies
683
views
News:
NCBI BLAST+ 2.14.1 Now Available
NCBI
BLAST
7 months ago by
PeterC_NCBI
▴ 410
8
votes
2
replies
2.3k
views
News:
The bioinformatics chat is a new podcast about bioinformatics. In the first episode we discuss Scallop, a transcriptome assembler
podcast
Assembly
RNA-Seq
updated 10 months ago by
Ram
43k • written 7.0 years ago by
roma
▴ 120
0
votes
2
replies
903
views
News:
The Practice of RADseq: Population Genomics Analysis with Stacks (RADS02) Early bird deadline approaching - 20th September
population-genomics
radseq
stacks
updated 6 months ago by
Dave Carlson
★ 1.7k • written 6 months ago by
oliverhooker
▴ 110
3
votes
2
replies
1.0k
views
News:
BETA Testing Opportunity for new RNA-seq data analysis tool
beta-testing
RNA-seq
multi-omics
ngs
updated 10 months ago by
Ram
43k • written 5.2 years ago by
polina99
• 0
8
votes
2
replies
559
views
News:
LAST CALL - Single-Cell RNA-Seq Data Analysis: A Practical Introduction (May 6-8, 2024 in Berlin)
single-cell
sequencing
22 days ago by
David Langenberger
11k
0
votes
2
replies
2.6k
views
News:
PART FUNDED SCHOLARSHIPS - Coding, data management, and Shiny applications using RStudio for evolutionary biologists and ecologists - May 2017
Rstudio
R
Shiny
updated 10 months ago by
Ram
43k • written 7.0 years ago by
oliverhooker
▴ 110
4
votes
2
replies
1.3k
views
News:
Hands-On Workshop: How to use bisulfite-treated sequencing to study DNA methylation (BS-Seq, Bisulfite-Seq, WGBS)
Workshop
methylation
bisulfite
updated 9 months ago by
Ram
43k • written 4.5 years ago by
Lars
★ 1.0k
6
votes
2
replies
2.6k
views
News:
RNA-Seq Data Analysis Workshop in Berlin, Germany (full)
NGS
RNA-Seq
workshop
updated 11 months ago by
Ram
43k • written 7.3 years ago by
David Langenberger
11k
5
votes
2
replies
897
views
News:
The precisionFDA BioCompute Object App-a-thon has been extended to October 18!
BioCompute
challenge
updated 10 months ago by
Ram
43k • written 4.7 years ago by
hollystephens723
▴ 70
1
vote
2
replies
1.8k
views
News:
Course: Applied Statistics and Bioinformatics with R and Bioconductor
Statistics
R
Metagenomics
Bioconductor
updated 10 months ago by
Ram
43k • written 6.7 years ago by
carlopecoraro2
★ 2.4k
4
votes
2
replies
2.8k
views
News:
New ebook: From cell line to Command line to learn computational biology
unix
snakemake
computational-biology
RNA-seq
4 months ago by
Ming Tommy Tang
★ 3.9k
1
vote
2
replies
1.3k
views
News:
Webinar on Diagnosis of Rare Diseases using NGS Based Multi-gene Testing- Case studies by Dr.Aparna Ganapathy on 18 Apr 2018
variant-calling
rare-disease
dna-seq
strand-ngs
updated 10 months ago by
Ram
43k • written 6.0 years ago by
Genomics
▴ 70
6
votes
2
replies
2.5k
views
News:
Interested in de novo transcriptome assembly using Trinity? Check out our interview to Brian Haas
alignment
RNA-Seq
updated 11 months ago by
Ram
43k • written 7.1 years ago by
carlopecoraro2
★ 2.4k
0
votes
2
replies
674
views
News:
Reduced functionality of Ensembl and Ensembl Genomes on the 13th November
ensembl
updated 9 months ago by
Ram
43k • written 4.4 years ago by
Emily
23k
1
vote
2
replies
1.8k
views
News:
Making efficient NGS data analysis softwares - GATB-Core Library Tutorial
next-gen
GATB
updated 11 months ago by
Ram
43k • written 7.5 years ago by
patrick.durand
▴ 140
2
votes
2
replies
489
views
News:
Unix and Shell Scripting for Bioinformatics course
Bash
Unix
Shell-Scripting
3 months ago by
carlopecoraro2
★ 2.4k
13
votes
2
replies
1.5k
views
News:
Thank you Biostars!
meta
updated 10 months ago by
Ram
43k • written 4.9 years ago by
Glory Basumata
▴ 140
5
votes
2
replies
1.5k
views
News:
Google Dataset Search
google
updated 10 months ago by
Ram
43k • written 5.6 years ago by
Pierre Lindenbaum
160k
0
votes
2
replies
1.7k
views
News:
2 Days Hands on Workshop on Transcriptome-Seq Data Analysis
RNA-Seq
sequencing
SNP
Assembly
updated 10 months ago by
Ram
43k • written 6.8 years ago by
clovergenls
• 0
0
votes
2
replies
1.2k
views
News:
20% Off - Next-Generation Sequencing Data Analysis: A Practical Introduction (May 3-5, 2023 in Munich, Germany)
NGS
DNA-Seq
variant-calling
RNA-Seq
workshop
11 months ago by
David Langenberger
11k
3
votes
2
replies
668
views
News:
Participate in a NCBI/NIAID Virtual Codeathon: VCF Files for Population Genomics, Jul 31 - Aug 4, 2023
VCF
SARS-CoV-2
NCBI
Codeathon
10 months ago by
PeterC_NCBI
▴ 410
3
votes
2
replies
1.2k
views
News:
Genome Informatics meeting software list
meetings
genomics
informatics
software
updated 10 months ago by
Ram
43k • written 6.4 years ago by
Sean Davis
26k
1
vote
2
replies
2.3k
views
News:
Workshop: Metagenomics, Metatranscriptomics, and multi'omics for microbial community studies (9-13 April 2018 in Berlin)
Metatranscriptomics
Metagenomics
updated 10 months ago by
Ram
43k • written 6.1 years ago by
carlopecoraro2
★ 2.4k
6
votes
2
replies
1.1k
views
News:
Temporarily reduced functionality of Ensembl and Ensembl Genomes
Ensembl
updated 10 months ago by
Ram
43k • written 5.1 years ago by
Ben_Ensembl
★ 2.3k
2
votes
2
replies
1.9k
views
News:
Introducing a new Instructor of Physalia-Courses: Dr. January Weiner
next-gen
SNP
sequence
updated 11 months ago by
Ram
43k • written 7.3 years ago by
carlopecoraro2
★ 2.4k
2
votes
2
replies
2.2k
views
News:
2017 NIH SUMMER INTERNSHIP PROGRAM IN BIOMEDICAL RESEARCH (SIP)--applications open
NIH
training
updated 11 months ago by
Ram
43k • written 7.4 years ago by
Sean Davis
26k
2
votes
2
replies
2.2k
views
News:
De Novo Transcriptome Analysis (Assembly and Differential Gene Expression in Non-Model Organisms)
Assembly
RNA-Seq
updated 11 months ago by
Ram
43k • written 7.7 years ago by
JohnBlue81
▴ 500
1
vote
2
replies
1.0k
views
News:
Sage Bionetworks is seeking researchers and data scientists to participate in software user research!
research
software
updated 10 months ago by
Ram
43k • written 5.1 years ago by
duminda.aluthgamage
▴ 30
1
vote
2
replies
738
views
News:
Ensembl reduced functionality, early March
ensembl
updated 9 months ago by
Ram
43k • written 4.2 years ago by
Emily
23k
3
votes
2
replies
1.2k
views
News:
Course "Data Crunching: from hell to heaven", Udine, Italy, 25-27 July, 2018
NGS
next-generation-sequencing
updated 10 months ago by
Ram
43k • written 5.8 years ago by
Fabio Marroni
★ 3.0k
0
votes
2
replies
197
views
News:
NGS & Microarray Custom Data Analysis Training Program
snp
RNA-Seq
next-gen-sequencing
ChIP-Seq
updated 10 months ago by
Ram
43k • written 4.7 years ago by
suvarna
• 0
0
votes
2
replies
1.6k
views
News:
Free Webinar: Sequence alignment: the central step in reference based Next Generation Sequencing data analysis
next-gen
SAM
alignment
sangenix
updated 11 months ago by
Ram
43k • written 7.2 years ago by
Persistent LABS
▴ 750
4
votes
1
reply
1.8k
views
News:
Bioinformatics Contest 2018
contest
updated 10 months ago by
Ram
43k • written 6.2 years ago by
ksenya1.618
▴ 40
8
votes
1
reply
241
views
News:
Registration OPEN: 8th Berlin Summer School in NGS Data Analysis (June 10-14, 2024)
Workshop
DNA-Seq
RNA-Seq
Illumina
updated 17 days ago by
JohnBlue81
▴ 500 • written 21 days ago by
David Langenberger
11k
0
votes
1
reply
1.4k
views
News:
Biocuration 2016 review
opendata
ontology
conference
biocuration
updated 11 months ago by
Ram
43k • written 8.0 years ago by
Sean Davis
26k
0
votes
1
reply
330
views
News:
Course: Genome Assembly and Annotation
Biodiversity
Genome-Assembly
Genome-Annotation
Long-reads
updated 3 months ago by
Ram
43k • written 3 months ago by
carlopecoraro2
★ 2.4k
2
votes
1
reply
1.9k
views
News:
Genomic Data Visualization and Interpretation Workshop
next-gen
R
genome
RNA-Seq
updated 10 months ago by
Ram
43k • written 6.8 years ago by
carlopecoraro2
★ 2.4k
1
vote
1
reply
920
views
News:
Webinar on Extensive Assessment of Gene Fusion Detection, Prioritization, Annotation and Characterization on 11 March 2020
detection
webinar
RNA-Seq
gene-fusion
updated 9 months ago by
Ram
43k • written 4.1 years ago by
Strand NGS
▴ 40
0
votes
1
reply
273
views
News:
Reminder: NCBI ClinVar XML update to accommodate somatic variants coming Jan 29, 2024
SNP
XML
ClinVar
NCBI
11 weeks ago by
PeterC_NCBI
▴ 410
3
votes
1
reply
1.3k
views
News:
GATK returns to a fully open-source license
gatk
updated 10 months ago by
Ram
43k • written 6.8 years ago by
Istvan Albert
100k
0
votes
1
reply
771
views
News:
Advanced R Programming Course
R
updated 10 months ago by
Ram
43k • written 5.9 years ago by
carlopecoraro2
★ 2.4k
1
vote
1
reply
1.7k
views
News:
2nd Berlin Summer School in NGS Data Analysis 2018
DNA-Seq
Workshop
NGS
RNA-Seq
updated 10 months ago by
Ram
43k • written 6.0 years ago by
David Langenberger
11k
0
votes
1
reply
1.5k
views
News:
Trinity Workshop: De novo Transcriptome Assembly, Annotation, and Downstream Expression Studies. Berlin 12-16 June (4 places left)
next-gen
Assembly
RNA-Seq
updated 10 months ago by
Ram
43k • written 7.0 years ago by
carlopecoraro2
★ 2.4k
0
votes
1
reply
563
views
News:
Getting started with R
R
updated 10 months ago by
Ram
43k • written 5.0 years ago by
carlopecoraro2
★ 2.4k
2
votes
1
reply
1.7k
views
News:
Meet Dr. Giovanni Marco Dall'Olio
NGS
training
RNA-Seq
updated 10 months ago by
Ram
43k • written 5.0 years ago by
David Langenberger
11k
1,000 results • Page
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Recent Votes
How can two contradicted gene sets be enriched in a cancer sample in GSEA analysis?
Comment: Only one read per run - Trying to use CellRangerv7
Comment: Interproscan taking so much time
Answer: Interproscan taking so much time
Comment: Volcano Plot Output Inquiry: Graphs Facing Down
A: Crispr-cas9 screen analysis mageck
A: Crispr-cas9 screen analysis mageck
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Comment: FindAllMarkers not working (Error (data layers are not joined. Please run JoinL
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Nitin
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I did ran the "JoinLayers()" even then it is not working, here is the output before and after DefaultAssay(combined1) <- 'RNA' c…
Comment: FindAllMarkers not working (Error (data layers are not joined. Please run JoinL
by
Nitin
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I tried that too. It did not work.
Comment: (sc)RNA-seq dataset for these cell lines: HEK293, HeLa, PC3 and U2OS
by
GenoMax
140k
Try SRA-explorer with search terms you want. Guide here: https://www.biostars.org/p/366721/ Check these portals: https://singlecell.broad…
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Thank you @genomax, if I have well understood the `retmax` parameter and 10000 entries limitation are linked to the R package, and not to t…
Comment: Nanopore data filtering using fastp
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emilydolivo97
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thank you , this is my code : import sys import os import subprocess class FastpFiltering: def __init__(self, input_folder, fastp_ou…
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GenoMax
140k
You can also use `reformat.sh` from [**BBMap suite**][1]. Look at sampling options. [1]: https://sourceforge.net/projects/bbmap/
Comment: calculate mismatch rate from VCF file
by
Pierre Lindenbaum
160k
> I was using it but the output file was too big pipe the output
Comment: Nanopore data filtering using fastp
by
dthorbur
★ 1.7k
Share code and an example please.
Comment: calculate mismatch rate from VCF file
by
Dora
▴ 10
I was using it but the output file was too big, so that I thought the vcf file was more efficient. But now I know that I can stop working o…
Comment: Interproscan taking so much time
by
Mohamed Abderrahmane
▴ 10
Thank you for your reply. I have just executed the computation with parallelization as you mentioned, and I will observe the differences. H…
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by
Lila M
★ 1.2k
Of course ... But as 'expected' the range `range=chr8:127794533-128101253` in the output sequence file belongs to: LF385466, LF385467, MA62…
Comment: struggle to get fasta files from ucsc goldenPath
by
GenoMax
140k
Can you select the output format as sequence instead of BED?
Comment: struggle to get fasta files from ucsc goldenPath
by
Lila M
★ 1.2k
Could you please elaborate how to retrieve the sequences directly from the table browser? Thanks!
Comment: struggle to get fasta files from ucsc goldenPath
by
GenoMax
140k
If coordinates in your BED file refer to chromosomal locations then you need to use the whole genome file and get those sections by the met…
Comment: How to Use Biostars, Part-I: Questions, Answers, Comments and Replies
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maybe it would work better to ask the OP to post their question as a new one and delete this answer after, if you delete the post they ca…
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