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1,000 results • Page 3 of 20
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News: A Multi-Split Mapping Algorithm For Circular Rna, Splicing, Trans-Splicing, And Fusion Detection
ngs mapping
updated 7 months ago by 40k • written 9.6 years ago by 10k
7
votes
11
replies
1.7k
views
News: Bringing the power of Big Data to biomedical researchers
NGS biomedical-research
updated 4 months ago by 40k • written 6.2 years ago by ▴ 100
7
votes
0
replies
2.8k
views
News: Correction for "A benchmark for RNA-seq quantification pipelines"
RNA-seq
updated 5 months ago by 40k • written 7.3 years ago by ▴ 70
7
votes
0
replies
1.7k
views
News: Us Ethics Panel Reports On Dna Sequencing And Privacy
next-gen
updated 7 months ago by 40k • written 11.0 years ago by 11k
6
votes
7
replies
5.1k
views
News: Illumina Nextseq 500 And Hiseq X Ten: Newer Tech Lowering Cost Per Mbp
Illumina
updated 7 months ago by 40k • written 9.7 years ago by ▴ 640
6
votes
1
reply
2.7k
views
News: "Oxford University Press to Publish NAR Genomics and Bioinformatics"
journal
updated 4 months ago by 40k • written 4.4 years ago by 157k
6
votes
0
replies
1.4k
views
News: Now Live: precisionFDA Hidden Treasures - Warm Up Challenge
next-gen-sequencing
updated 4 months ago by 40k • written 6.2 years ago by ▴ 90
6
votes
2
replies
1.7k
views
News: Belly Button Biodiversity Project Requests Your Analysis
biodiversity project
updated 7 months ago by 40k • written 10.9 years ago by 11k
6
votes
2
replies
1.4k
views
News: Biostars On The Genome Technology Cover
biostars
updated 7 months ago by 40k • written 10.7 years ago by 98k
6
votes
0
replies
856
views
News: CWL user support moving to https://cwl.discourse.group/; many thanks to Biostars for over 4 years of support!
cwl thanks
updated 3 months ago by 40k • written 3.9 years ago by ★ 1.9k
6
votes
13
replies
1.7k
views
News: Ensembl reduced functionality: 10th March-16th April 2020
BLAT VEP Ensembl service
updated 3 months ago by 40k • written 3.6 years ago by ★ 2.3k
6
votes
4
replies
1.1k
views
News: Course online - Comparative Genomics
assembly genome next-gen alignment
updated 3 months ago by 40k • written 3.4 years ago by ★ 2.4k
6
votes
0
replies
2.6k
views
News: New Methods Section In Plos Computational Biology
publications plos
updated 7 months ago by 40k • written 10.6 years ago by 18k
6
votes
1
reply
2.7k
views
News: GMOD Online Training 2014 coming up
galaxy chado gmod annotation
updated 6 months ago by 40k • written 9.5 years ago by 11k
6
votes
1
reply
1.9k
views
News: Massively Differential Bias Between Two Widely Used Illumina Library Preparation Methods For Small Rna Sequencing
illumina RNA-seq
updated 7 months ago by 40k • written 9.8 years ago by 10k
6
votes
2
replies
2.0k
views
News: RNA-Seq Data Analysis Workshop in Leipzig, Germany (09 - 12 October 2017)
NGS RNA-Seq workshop
updated 4 months ago by 40k • written 6.2 years ago by 10k
6
votes
9
replies
4.0k
views
News: 1000 Genomes : The Initial Phase 3 variant list and phased genotypes.
1000genomes
updated 6 months ago by 40k • written 9.3 years ago by 157k
6
votes
4
replies
1.5k
views
News: Genomic variation course at the EBI - Updated
Ensembl 1000Genomes snps variation
updated 5 months ago by 40k • written 7.5 years ago by 23k
6
votes
1
reply
1.8k
views
News: Contest: Antibody Marathon Match Problem: ABCSpeedup
contest
updated 6 months ago by 40k • written 8.7 years ago by 157k
6
votes
0
replies
1.6k
views
News: BOSC 2015 slides and videos
BOSC BOSC2015
updated 11 months ago by 40k • written 8.2 years ago by ★ 2.2k
6
votes
0
replies
1.8k
views
News: Bioinformatics Contest 2017
contest
updated 5 months ago by 40k • written 6.7 years ago by ▴ 70
6
votes
2
replies
2.4k
views
News: Interested in de novo transcriptome assembly using Trinity? Check out our interview to Brian Haas
alignment RNA-Seq
updated 5 months ago by 40k • written 6.6 years ago by ★ 2.4k
6
votes
1
reply
1.8k
views
News: Are protein domains indivisible?
Athropy Domains Proteins
updated 6 months ago by 40k • written 8.3 years ago by ★ 4.2k
6
votes
2
replies
2.5k
views
News: RNA-Seq Data Analysis Workshop in Berlin, Germany (full)
NGS RNA-Seq workshop
updated 5 months ago by 40k • written 6.8 years ago by 10k
6
votes
4
replies
4.1k
views
News: awesome-single-cell: a list of open-source single-cell analysis software and workshop materials
single-cell RNA-Seq
updated 5 months ago by 40k • written 7.3 years ago by 26k
6
votes
5
replies
5.0k
views
News: NCBI MagicBlast ( Short read mapper )
blast ncbi short-read mapper hts
updated 5 months ago by 40k • written 7.1 years ago by 157k
6
votes
1
reply
3.5k
views
News: Symposium And Rna-Seq Data Analysis Workshop Charlotte May 13-14
RNA RNA-seq training
updated 6 months ago by 40k • written 9.5 years ago by ★ 2.4k
6
votes
2
replies
972
views
News: Temporarily reduced functionality of Ensembl and Ensembl Genomes
Ensembl
updated 4 months ago by 40k • written 4.7 years ago by ★ 2.3k
6
votes
0
replies
2.7k
views
News: Broad Releases Fastg Multiple Seq Assembly Format
FASTG reference-format
updated 7 months ago by 40k • written 10.8 years ago by ★ 5.2k
6
votes
1
reply
2.4k
views
News: FastQC Version 0.11.1 released
genome next-gen-sequencing
updated 6 months ago by 40k • written 9.3 years ago by ★ 2.2k
6
votes
2
replies
2.1k
views
News: Galaxy-specific Biostar Instance
galaxy biostars
updated 7 months ago by 40k • written 9.4 years ago by ▴ 380
6
votes
0
replies
2.5k
views
News: http://crackingthebiocode.github.io : Profiles of Computational Biologists & Bioinformaticians
career
updated 6 months ago by 40k • written 9.0 years ago by 157k
6
votes
1
reply
941
views
News: uniprot.org is moving from HTTP to HTTPS
protein database uniprot
updated 4 months ago by 40k • written 5.8 years ago by ★ 2.3k
6
votes
3
replies
2.3k
views
News: Become a Professional Biinformatician in NGS, Microarray in very fair price. Register for ArrayGen training program as soon as possible to get good a…
ChIP-Seq next-gen RNA-Seq
updated 5 months ago by 40k • written 6.7 years ago by • 0
6
votes
7
replies
1.9k
views
News: NCBI wants to remove quality scores from SRA
quality-scores trimming Assembly genome SRA
updated 3 months ago by 40k • written 3.2 years ago by ▴ 40
6
votes
0
replies
2.2k
views
News: Bioinformatics internships with Google Summer of Code 2019
intern Ensembl GSOC
updated 4 months ago by 40k • written 4.6 years ago by 23k
6
votes
0
replies
5.2k
views
News: Game Changer? Illumina Nextseq 500
illumina
updated 7 months ago by 40k • written 9.7 years ago by ★ 1.3k
5
votes
3
replies
686
views
News: March 13-16: Virtual Nextflow and nf-core training event in 5 languages
nf-core pipeline Nextflow
updated 6 months ago by ▴ 330 • written 7 months ago by 4.1k
5
votes
0
replies
2.9k
views
News: Penn State now offers an Online Graduate Certificate: Applied Bioinformatics
bioinformatics-education
updated 6 months ago by 40k • written 9.1 years ago by 98k
5
votes
0
replies
1.7k
views
News: Bioinformatics Contest 2019
bioinforussia bioinfcontest bioinfcontest2019
updated 4 months ago by 40k • written 4.8 years ago by ▴ 50
5
votes
2
replies
788
views
News: The precisionFDA BioCompute Object App-a-thon has been extended to October 18!
BioCompute challenge
updated 4 months ago by 40k • written 4.2 years ago by ▴ 70
5
votes
1
reply
1.3k
views
News: Bioinformatics Contest 2017
Contest
updated 9 months ago by 40k • written 6.8 years ago by 7.1k
5
votes
1
reply
1.1k
views
News: Paid opportunity: need microbiome experts for a survey and test of robustness
survey
updated 7 months ago by 40k • written 3.0 years ago by 21k
5
votes
1
reply
2.5k
views
News: Advanced Course: R programming and development 15-16. January 2015 (Thursday-Friday), EMBL Heidelberg
programming course R
updated 6 months ago by 40k • written 8.9 years ago by ★ 1.7k
5
votes
2
replies
1.5k
views
News: #scRNABIO & organoids meeting
single-cell-sequencing microfluidics organoids
updated 4 months ago by 40k • written 5.1 years ago by ▴ 320
5
votes
4
replies
1.7k
views
News: 2nd International Conference on Pediatric Oncology and Pediatric Medicine
gene
updated 5 months ago by 40k • written 6.6 years ago by • 0
5
votes
0
replies
1.9k
views
News: Ebi Rdf Platform Launched Today
EBI
updated 7 months ago by 40k • written 10.0 years ago by 157k
5
votes
3
replies
1.4k
views
News: Bioinfo-Core Conference Call, October 17, 2017 (11 am EDT USA, local times around world)
bioinfo-core
updated 6 months ago by 40k • written 6.1 years ago by 134k
5
votes
1
reply
1.4k
views
News: 2-day WORKSHOP on SNAKEMAKE
next-gen
updated 4 months ago by 40k • written 5.3 years ago by ★ 2.4k
5
votes
0
replies
1.2k
views
News: NCBI Switching to https!
ncbi api
updated 5 months ago by 40k • written 7.1 years ago by ▴ 330
1,000 results • Page 3 of 20
Recent Votes
Comment: ncbi error report log for validate fastq issue
Comment: ncbi error report log for validate fastq issue
A: Bowtie2 MAPQ difference using local vs end-to-end alignment
C: Bowtie2 MAPQ difference using local vs end-to-end alignment
Answer: TPM RNA-seq data for differential expression analysis
A: Error When Installing Emboss
Answer: Subclustering of intergated cells from scRNA-seq data
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Recent Replies
Comment: Assessing Rockhopper's output by shelkmike ▴ 980
I used Rockhopper only for bacterial genomes assembled into circular contigs or circular scaffolds.
Comment: Unable to install HorvathMammalMethylChip40manifest packages by ATpoint 77k
There is no package of that name in CRAN or Bioconductor. Where do you have it from, so which tutorial you follow?
Comment: Subclustering of intergated cells from scRNA-seq data by fifty_fifty ▴ 60
thank you. This is exactly what I was looking for
Answer: Search RCSB with a list of protein names? by Mensur Dlakic ★ 25k
This is not the most elegant solution, but it should work with previous suggestions. In this remote directory: http://ftp.wwpdb.org/p…
Answer: Automate the Splitting of a VCF File by Sample (bcftools) by Ram 40k
The manual says you can split samples out at once using the `+split` plugin. So, `bcftools +split -Oz -o <PATH> file.vcf.gz` should do the …
Comment: differences between trajectories in conditions with Monocle3 or other tools by Amitm ★ 2.2k
Phate (or Monocle) doesn't do UMAP. If you have done UMAP already (using seurat) then you could use the cell barcode to UMAP cluster label …
Comment: Error: cannot open file 2 for reading From Cufflinks Version 2.2.1 When Attempti by Y • 0
I figured out how to make it work. The bams have to be comma separated not just by space: cd "${input_directory_with_associated_bam_fi…
Comment: Search RCSB with a list of protein names? by Joseph • 0
Hey, this is so close to what I'm looking for - I clarified in my edit. This is a great way to batch download lots of PDBs in RCSB by their…
Comment: Search RCSB with a list of protein names? by Joseph • 0
This is a really neat package, but I don't think it does exactly what I want, so I've clarified my question. This seems like it grabs a PD…
Comment: How to get the gft file to run velocyto for velocity analysis? by Chris ▴ 200
Yes, thank you! I figured it out but I got an error: velocyto run10x -m Hg38_rmsk.gtf WT/outs /cellranger/reference/refdata-cellranger…
Comment: How to get the gft file to run velocyto for velocity analysis? by bk11 ★ 1.3k
You can get from here- [UCSC][1]. Just click on get output botton. [1]: https://genome.ucsc.edu/cgi-bin/hgTables?hgsid=611454127_NtvlaW…
Answer: Search RCSB with a list of protein names? by bk11 ★ 1.3k
You can use `Bio3D` an R Package for this. [http://thegrantlab.org/bio3d_v2/tutorials/installing-bio3d][1] [http://thegrantlab.org/b…
Comment: Search RCSB with a list of protein names? by GenoMax 134k
You can download various types of bulk data files from RCSB here: https://www.rcsb.org/docs/programmatic-access/file-download-services You…
Comment: How to perform hypothesis testing on contingency tables and compare with the nul by RK • 0
Thank you so much
Comment: How to perform hypothesis testing on contingency tables and compare with the nul by Jean-Karim Heriche 26k
So just do a regular chi-squared test as I explained above. The null hypothesis is that there are as many mutated/unmutated trinucleotides …
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