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446 results • Page 4 of 9
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265
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News: Reproducibility in Bioinformatics Workshop
Reproducibility
updated 3 months ago by 38k • written 12 months ago by ★ 2.3k
0
votes
1
reply
391
views
News: 6th Berlin Summer School in NGS Data Analysis (June 13-17, 2022)
RNAseq DNAseq transcriptomics
12 months ago by David Langenberger 9.9k
0
votes
0
replies
257
views
News: Cellosaurus release 41 is available
knowledgebase biocuration cell-line
updated 5 weeks ago by 38k • written 12 months ago by ▴ 110
1
vote
0
replies
388
views
News: :: LAST CALL :: Bioinformatics Pipeline Development with Nextflow (April 4-7, 2022)
NGS Pipeline-Development Nextflow
updated 3 months ago by 38k • written 12 months ago by 9.9k
0
votes
0
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335
views
News: Cellosaurus release 40 is available
knowledgebase cell-line
updated 5 weeks ago by 38k • written 15 months ago by ▴ 110
0
votes
0
replies
299
views
News: Bioinformatics Analysis
Transcriptome genome data-analysis
updated 5 weeks ago by 38k • written 15 months ago by • 0
0
votes
0
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347
views
News: Bioinformatics
metagenomics metatranscriptomics
updated 5 weeks ago by 38k • written 16 months ago by • 0
0
votes
0
replies
346
views
News: UC Davis Bioinformatics Core Workshops
data-analysis
updated 5 weeks ago by 38k • written 16 months ago by • 0
0
votes
0
replies
439
views
News: Metagenomics and Metatranscriptomics Workshop!
metagenomics metatranscriptomics
updated 5 weeks ago by 38k • written 16 months ago by • 0
0
votes
0
replies
587
views
News: UC Davis Bioinformatics Core Workshops
Workshops UC-Davis
updated 5 weeks ago by 38k • written 16 months ago by • 0
1
vote
1
reply
464
views
News: QC for Next Generation Sequencing
NGS QC
updated 10 days ago by 38k • written 17 months ago by • 0
0
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0
replies
452
views
News: Cellosaurus release 39 is available
knowledgebase cell-line
updated 5 weeks ago by 38k • written 18 months ago by ▴ 110
0
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0
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548
views
News: FINAL CALL :: Online Course - A Practical Introduction to NGS Data Analysis (July 14-16, 2021)
NGS workshop
updated 2 days ago by 38k • written 21 months ago by 9.9k
0
votes
0
replies
447
views
News: Cellosaurus release 38 is available
knowledgebase cell-line
updated 5 weeks ago by 38k • written 22 months ago by ▴ 110
0
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1
reply
1.0k
views
News: 5th Berlin Summer School in NGS Data Analysis 2021 (October 4-8)
DNA-Seq Workshop RNA-Seq NGS
updated 5 weeks ago by 38k • written 2.1 years ago by 9.9k
5
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0
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970
views
News: Bioinformatics Contest 2021
bioinfcontest contest bioinforussia
updated 5 weeks ago by 38k • written 22 months ago by ▴ 50
0
votes
0
replies
536
views
News: Introduction to Deep Learning
Machine-Learning Deep-Learning Python
updated 5 weeks ago by 38k • written 2.0 years ago by ★ 2.3k
0
votes
0
replies
588
views
News: Learn how to do modern reproducible data science
Snakemake Workflows Nextflow
updated 5 weeks ago by 38k • written 2.0 years ago by ★ 2.3k
0
votes
0
replies
479
views
News: Noncoding RNA conference (including bioinformatics)
conference RNA noncoding-RNA
updated 5 weeks ago by 38k • written 2.0 years ago by ▴ 20
0
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0
replies
523
views
News: Spring Bioinformatics Courses @ Edinburgh Genomics
metagenomics RNA-Seq SNP training
updated 5 weeks ago by 38k • written 2.0 years ago by ▴ 40
0
votes
1
reply
867
views
News: Results are now Available for the precisionFDA Truth Challenge V2
genome
updated 5 weeks ago by 38k • written 2.6 years ago by ▴ 150
1
vote
0
replies
613
views
News: Online Training - Analysis of Transposable elements
genome assembly sequence
updated 5 weeks ago by 38k • written 2.0 years ago by ★ 2.3k
0
votes
0
replies
515
views
News: Three x 2day online Python courses
Python
updated 5 weeks ago by 38k • written 2.0 years ago by ▴ 60
0
votes
0
replies
525
views
News: Nine x 2day online R courses
R
updated 5 weeks ago by 38k • written 2.0 years ago by ▴ 60
3
votes
0
replies
567
views
News: Free Ensembl Browser and REST API virtual workshops in March
Ensembl REST-API genome-browser training workshop
updated 5 weeks ago by 38k • written 2.0 years ago by ▴ 270
5
votes
1
reply
985
views
News: Paid opportunity: need microbiome experts for a survey and test of robustness
survey
updated 5 weeks ago by 38k • written 2.4 years ago by 21k
0
votes
1
reply
604
views
News: The NCBI Datasets command-line tool now provides ortholog data
ncbi gene json refseq
updated 5 weeks ago by 38k • written 2.1 years ago by ▴ 50
1
vote
0
replies
1.2k
views
News: 3-day ONLINE TRAINING - NEXTFLOW
workflow Nextflow
updated 5 weeks ago by 38k • written 2.1 years ago by ★ 2.3k
0
votes
0
replies
645
views
News: ONLINE training - Single-cell RNA-seq analysis with R/Bioconductor. 07-11 June
Bioconductor RNA-Seq Single-Cell R
updated 5 weeks ago by 38k • written 2.1 years ago by ★ 2.3k
3
votes
0
replies
856
views
News: Online training - Unix and shell scripting for bioinformatics
Linux scripting Unix
updated 5 weeks ago by 38k • written 2.1 years ago by ★ 2.3k
0
votes
0
replies
626
views
News: Cellosaurus release 37 is available
knowledgebase cell-line
updated 5 weeks ago by 38k • written 2.2 years ago by ▴ 110
1
vote
1
reply
739
views
News: ONLINE TRAINING -GENOME ASSEMBLY USING OXFORD NANOPORE SEQUENCING
genome assembly Nanopore
updated 5 weeks ago by 38k • written 2.2 years ago by ★ 2.3k
0
votes
0
replies
932
views
News: DNA Methylation Data Analysis Workshop (April 12-15, 2021 in Berlin)
Epigenetics Bisulfite Methylation
updated 5 weeks ago by 38k • written 2.2 years ago by 9.9k
1
vote
0
replies
584
views
News: Online training: Advanced Programming in R
Programming R
updated 5 weeks ago by 38k • written 2.2 years ago by ★ 2.3k
0
votes
0
replies
581
views
News: Tutorial on Detecting Structural Variants in ONT data
structural-variants ONT
updated 5 weeks ago by 38k • written 2.2 years ago by • 0
0
votes
0
replies
1.1k
views
News: Online Workshop: Bioinformatics Pipeline Development with Nextflow (May 3-6, 2021)
NGS pipeline Nextflow
updated 5 weeks ago by 38k • written 2.2 years ago by 9.9k
0
votes
0
replies
637
views
News: Online Training - GENOME-WIDE PREDICTION OF COMPLEX TRAITS - Last days to apply
next-gen genome SNP
updated 5 weeks ago by 38k • written 2.2 years ago by ★ 2.3k
0
votes
1
reply
947
views
News: :: LAST CALL :: Online Course - A Practical Introduction to NGS Data Analysis (March 1 - 3, 2021)
DNA-Seq Workshop RNA-Seq
updated 5 weeks ago by 38k • written 2.2 years ago by 9.9k
3
votes
0
replies
911
views
News: ONLINE TRAINING: Environmental Metagenomics
metagenomics nanopore assembly illumina
updated 5 weeks ago by 38k • written 2.2 years ago by ★ 2.3k
2
votes
0
replies
566
views
News: ONLINE TRAINING - Web Applications Development with R Shiny
Shiny R
updated 5 weeks ago by 38k • written 2.2 years ago by ★ 2.3k
0
votes
0
replies
563
views
News: Online Training - An introduction to Nanopore direct RNA Sequencing - last 2 places left
RNA-Seq Nanopore
updated 5 weeks ago by 38k • written 2.2 years ago by ★ 2.3k
2
votes
0
replies
653
views
News: Online training - Computational Bayesian methods using brms in R
Bayesian-Statistics R
updated 5 weeks ago by 38k • written 2.3 years ago by ★ 2.3k
0
votes
0
replies
596
views
News: ONLINE training - Eukaryotic Metabarcoding
eDNA Metabarcoding
updated 5 weeks ago by 38k • written 2.3 years ago by ★ 2.3k
0
votes
0
replies
710
views
News: New columns added to the web BLAST Descriptions Table including taxonomic info and sequence length
ncbi blast
updated 5 weeks ago by 38k • written 2.3 years ago by 126k
2
votes
0
replies
710
views
News: Nanopore direct RNA Sequencing course
RNA-Seq Nanopore
updated 5 weeks ago by 38k • written 2.3 years ago by ★ 2.3k
0
votes
0
replies
1.2k
views
News: Online training - Proteomics in R and Bioconductor
Bioconductor R Proteomics
updated 5 weeks ago by 38k • written 2.4 years ago by ★ 2.3k
0
votes
0
replies
640
views
News: Are Online Trainings for NGS Data Analysis as Effective as In-person Workshops?
DNA-Seq Workshop RNA-Seq
updated 5 weeks ago by 38k • written 2.4 years ago by 9.9k
0
votes
0
replies
589
views
News: Cellosaurus release 36 is available
knowledgebase cell-line
updated 5 weeks ago by 38k • written 2.4 years ago by ▴ 110
8
votes
1
reply
2.5k
views
News: An Interesting Article On Bioinformatics Education With Some Press For Biostar
meta biostars
updated 4 weeks ago by 38k • written 9.6 years ago by 11k
0
votes
0
replies
639
views
News: Online Training: Epigenomics
ChIP-Seq next-gen RNA-Seq
updated 5 weeks ago by 38k • written 2.4 years ago by ★ 2.3k
446 results • Page 4 of 9
Recent Votes
C: extracting heterozygous snp from a vcf file
Comment: March 13-16: Virtual Nextflow and nf-core training event in 5 languages
Answer: Where do find virulence gene information in a gff/gtf file?
Comment: split fasta file to train deep learning model
Criteria for filtering contigs after spades assembly
C: How filter genes to construct co-expression network?
C: How filter genes to construct co-expression network?
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Recent Replies
Answer: Practical Haplotype Graph -- Pathing Error by lcj34 ▴ 220
FYI - The latest PHG docker version (tag 1.4) has a fix for this issue.
Comment: Nextflow: No space left on device, process using output directory as input? by Maxime Garcia ▴ 220
Nextflow should only link inputs (unless stated otherwise), so even if you use outdir as input it should not be much of an issue, but still…
Comment: Problem in converting SAM to BAM file by DROP SEQ by lieven.sterck 14k
Hi https://www.biostars.org/u/126271/, welcome. it might be good to add some more info on your "question". Now it only shows an error mes…
Comment: Trying to install Roary with Conda results in error message by tobiwan • 0
Thank you for your answer I'm using Ubuntu 22.04.2 LTS, command line used: conda install roary. Or do you need a screenshot of the whole …
Comment: Nextflow: No space left on device, process using output directory as input? by colindaven 4.5k
Yes, don't use the outdir as an input. You might get infinite loops.
Comment: UnicodeDecodeError: 'utf-8' codec can't decode byte 0x8b in position 1: invalid by wangjincheng • 0
I tried unzipped file, it shows the same error
Comment: UnicodeDecodeError: 'utf-8' codec can't decode byte 0x8b in position 1: invalid by Pierre Lindenbaum 153k
> use python package to load and analysis vcf.gz files looks like it doesn't like gzipped file. Are you sure this software can read gzip…
Comment: Trying to install Roary with Conda results in error message by ATpoint 70k
This cannot be answered. Add your command line and operating system.
Comment: split fasta file to train deep learning model by shenwei356 7.9k
shuffle the sequences, with a rand seed 1. seqkit shuffle --two-pass --rand-seed 1 hairpin.fa -o hairpin.s1.fa testing data …
Comment: split fasta file to train deep learning model by pinheirofabiano ▴ 10
I'm trying to split my file in two, using Seqkit, but it is not working.. using the command sample, I can generate a file that contains 80%…
Comment: split fasta file to train deep learning model by pinheirofabiano ▴ 10
thank you very much for your comment, @Mensur My file is just a list of peptides, not a complete genome
Comment: March 13-16: Virtual Nextflow and nf-core training event in 5 languages by Maxime Garcia ▴ 220
All the videos are now online and organized in 5 different playlists on the nf-core youtube channel: https://www.youtube.com/@nf-core/playl…
Answer: What is the difference between agilent_wholegenome and agilent_wholegenome_4x44k by Mike Smith ★ 2.0k
We can take a look at the content of those three attributes to try and figure this out. Here's some code to extract each set of Agilent ID…
Comment: FastQ file not recognized by hisat2 allignment by Maxime Garcia ▴ 220
I'd agree with you, but just to clarify. The fact that you actually used `path("fastq1")` instead of `path(fastq1)`, named the input file `…
Answer: Where do find virulence gene information in a gff/gtf file? by oschwengers ▴ 90
You could try Bakta to annotate your bacterial genome. Internally, it uses AMRFinderPlus and VFDB and potential hits are marked in GFF3 col…
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