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News: The Biostar Handbook. A bioinformatics e-book for beginners.
training handbook
updated 12 weeks ago by 2.6k • written 7.4 years ago by 100k
0
votes
0
replies
91
views
News: Online course: Meta-analysis in R
Meta-Analysis Statistics R
updated 16 hours ago by 43k • written 18 hours ago by ★ 2.5k
0
votes
0
replies
92
views
News: Course - Agent-Based Modelling Using NetLogo - University of Lodz, Poland
Netlogo Individual-Based-Models Agent-Based-Models
updated 16 hours ago by 43k • written 20 hours ago by ★ 2.5k
0
votes
0
replies
151
views
News: Final Call - Bioinformatics Pipeline Development with Nextflow (May 27-29, 2024)
workshop RNA-seq nextflow DNA-seq
updated 2 days ago by 43k • written 2 days ago by 11k
0
votes
0
replies
124
views
News: Deadline Approaching: PETs for Public Health Challenge
privacy public-health-challenge
updated 3 days ago by 43k • written 3 days ago by ▴ 380
0
votes
0
replies
152
views
News: Online course: Network Analysis in R
NetworkAnalyis R
4 days ago by carlopecoraro2 ★ 2.5k
0
votes
0
replies
172
views
News: Online course: Meta-analysis in R
Meta-Analysis R
updated 7 days ago by 43k • written 7 days ago by ★ 2.5k
1
vote
0
replies
117
views
News: Online Live Course: Introduction to Machine Learning in R
Rstats TScourses Rlang Rproject
updated 7 days ago by 43k • written 7 days ago by ▴ 70
2
votes
0
replies
112
views
News: Online Course Generalised Additive Mixed Models (GAMM): modelling space-time correlation structures
GAMM Rlang Rstats Rproject
updated 7 days ago by 43k • written 7 days ago by ▴ 70
2
votes
0
replies
108
views
News: Online Course Introduction to Network Analysis and Modelling
Python Network-Analysis
updated 7 days ago by 43k • written 7 days ago by ▴ 70
2
votes
0
replies
105
views
News: Course Functional Programming with R
Rstats TScourses Rproject KeepLearning Rlang
8 days ago by Transmitting Science communication ▴ 70
12
votes
2
replies
423
views
News: 8th Berlin Summer School in NGS Data Analysis (June 10-14, 2024) - already half booked
Workshop RNA-Seq DNA-Seq Illumina
9 days ago by David Langenberger 11k
2
votes
0
replies
106
views
News: Online course: Genome Annotation
Genome-Assembly RNA-seq Genome-Annotation
updated 9 days ago by 43k • written 9 days ago by ★ 2.5k
0
votes
0
replies
105
views
News: Online course: Multivariate Data Analysis with R and vegan
Multivariate-Statistics vegan R
updated 10 days ago by 43k • written 11 days ago by ★ 2.5k
1
vote
0
replies
159
views
News: Landscape Genomics course in Switzerland
LFMM Landscape-Genomics Sambada R Local-Adaptation
updated 10 days ago by 43k • written 12 days ago by ★ 2.5k
8
votes
2
replies
749
views
News: FINAL CALL - Single-Cell RNA-Seq Data Analysis: A Practical Introduction (May 6-8, 2024 in Berlin)
single-cell sequencing
13 days ago by David Langenberger 11k
0
votes
0
replies
129
views
News: Online course: Food Traceability Using Genomic Tools
Nanopore Genomic-Tools Illumina Food-Traceability
updated 15 days ago by 43k • written 15 days ago by ★ 2.5k
0
votes
0
replies
136
views
News: Online course: Eukaryotic Metabarcoding
Metabarcoding Biodiversity R eDNA
17 days ago by carlopecoraro2 ★ 2.5k
3
votes
2
replies
535
views
News: Announcement: Research Topic "Mechanistic, Machine Learning and Hybrid Models of the 'Other' Endocrine Regulatory Systems in Health and Disease", Vol…
mathematical-modelling endocrinology ML systems-biology machine-learning
20 days ago by Johannes W. Dietrich • 0
0
votes
0
replies
185
views
News: Online course: Reproducibility in Bioinformatics
Singularity Version-Control Docker Containers
updated 21 days ago by 43k • written 21 days ago by ★ 2.5k
0
votes
0
replies
152
views
News: Online course: Analysis of Prokaryotic Pangenomes (Last call)
Prokaryotic Bacterial-Genomics Pangenomics
updated 21 days ago by 43k • written 21 days ago by ★ 2.5k
0
votes
0
replies
150
views
News: Online course: Introduction to GWAS
GWAS Imputation StatisticalPower
25 days ago by carlopecoraro2 ★ 2.5k
0
votes
0
replies
151
views
News: Online course: Adaptation Genomics
StructuralVariants Selection AdaptationGenomics PopulationStructure
4 weeks ago by carlopecoraro2 ★ 2.5k
0
votes
0
replies
143
views
News: Online course: Analysis of Prokaryotic Pangenomes
BacterialGenomics Pangenomics
4 weeks ago by carlopecoraro2 ★ 2.5k
0
votes
0
replies
220
views
News: Online course on Genome Assembly and Annotation (1 seat left)
Galaxy GenomeAssembly GenomeAnnotation
5 weeks ago by carlopecoraro2 ★ 2.5k
1
vote
0
replies
158
views
News: NCBI's ClinVar now accepting somatic variation data
variation NCBI somatic-variants ClinVar
5 weeks ago by PeterC_NCBI ▴ 410
1
vote
1
reply
260
views
News: EMBL Course Hands-on course for sample preparation and data analysis in proteomics
EMBLProteomics
updated 5 weeks ago by • 0 • written 10 weeks ago by ▴ 10
1
vote
0
replies
177
views
News: Learn how to create robust bioinformatics pipelines for reproducible and comparable NGS analyses
nextflow pipeline workshop
5 weeks ago by David Langenberger 11k
0
votes
0
replies
142
views
News: Online course: Genome Assembly and Annotation - 3 seats left
Genome-Assembly Galaxy Genome-Annotation
updated 5 weeks ago by 43k • written 5 weeks ago by ★ 2.5k
0
votes
0
replies
141
views
News: Call for abstract: Quest for Orthologs meeting in Montreal
conference phylogeny comparativegenomics orthology evolution
5 weeks ago by sina.majidian ▴ 20
1
vote
0
replies
145
views
News: shournal: A Tool for Bioinformaticians to Boost Research Reproducibility
reproducability terminal bash
6 weeks ago by David Langenberger 11k
1
vote
1
reply
184
views
News: Integrated Genome Browser (IGB) Office Hours
Integrated-Genome-Browser IGB
updated 6 weeks ago by 43k • written 6 weeks ago by • 0
0
votes
0
replies
175
views
News: Online course: Network Analysis in Systems Biology with R/Bioconductor
R RNA-seq Network-Analysis Bioconductor Systems-Biology
updated 6 weeks ago by 43k • written 6 weeks ago by ★ 2.5k
0
votes
0
replies
206
views
News: The 2024 Canadian Bioinformatics Workshops are here!
CBW workshop training
7 weeks ago by bioinformatics.ca • 0
0
votes
0
replies
164
views
News: Live online course Data Manipulation with R Tidyverse, 3 and 5 of April
R manipulation tidyverse data
7 weeks ago by Sole • 0
0
votes
0
replies
183
views
News: Online course: Reproducibility in Bioinformatics
Docker Singularity WorkflowManagementSystems Reproducibility
7 weeks ago by carlopecoraro2 ★ 2.5k
0
votes
0
replies
237
views
News: Online course: Genome Assembly Using Oxford Nanopore Sequencing - 4 seats remaining
GenomeAssembly Nanopore longreads
7 weeks ago by carlopecoraro2 ★ 2.5k
0
votes
0
replies
216
views
News: Webinar about scRNA-seq cell type prediction
scRNAseq
updated 7 weeks ago by 141k • written 7 weeks ago by • 0
0
votes
0
replies
226
views
News: Online course: Spatial Omics in R/Bioconductor
R Spatial-Omics Bioconductor tidyverse transcriptomics
updated 8 weeks ago by 43k • written 8 weeks ago by ★ 2.5k
0
votes
0
replies
193
views
News: Online course: Model-Based Demographic Inference from Population Genomics
Demographic-Inference Population-Genomics Demographic-Models
updated 8 weeks ago by 43k • written 8 weeks ago by ★ 2.5k
0
votes
0
replies
160
views
News: Online course: R/Bioconductor for Mass Spectrometry and Proteomics
R Proteomics Bioconductor Mass-Spectrometry
updated 9 weeks ago by 43k • written 9 weeks ago by ★ 2.5k
0
votes
0
replies
174
views
News: Virtual Workshops with the UConn Computational Biology Core
Workshop genomics
updated 9 weeks ago by 141k • written 9 weeks ago by ▴ 10
0
votes
0
replies
167
views
News: NGS Data Analysis Courses for Absolute Beginners
NGS DNAseq RNAseq singlecellsequencing DataAnalysis
9 weeks ago by David Langenberger 11k
0
votes
0
replies
184
views
News: Online course: Genome Assembly and Annotation
Annotation Genome-Assembly Nanopore Pacbio
updated 9 weeks ago by 43k • written 9 weeks ago by ★ 2.5k
0
votes
0
replies
161
views
News: Online course: Computation Tumor Evolution
R Cancer-Genomics Tumor-Evolution Genomics
updated 10 weeks ago by 43k • written 10 weeks ago by ★ 2.5k
0
votes
0
replies
162
views
News: Course live online Intro Bayesian Analyses, March 4-8, 2024
R python bayesian
10 weeks ago by Sole • 0
0
votes
1
reply
923
views
News: FINAL CALL: RNA-Seq Data Analysis Workshop (March 11 - 14, 2024 in Berlin, Germany)
NGS RNA-Seq Workshop
10 weeks ago by David Langenberger 11k
0
votes
0
replies
209
views
News: Online course : Meta-Analysis in R
R Meta-Analysis Statistics
updated 10 weeks ago by 43k • written 10 weeks ago by ★ 2.5k
1
vote
0
replies
178
views
News: Cellosaurus release 48 is available
cell-line biocuration cellosaurus knowledgebase
11 weeks ago by Amos Bairoch ▴ 120
0
votes
0
replies
220
views
News: Online course: Genome Assembly Using Oxford Nanopore Sequencing
Genome-Assembly Nanopore
updated 11 weeks ago by 43k • written 11 weeks ago by ★ 2.5k
1,000 results • Page 1 of 20
Recent Votes
How to compare the quality of assemblies
Filtration Of Reads With Length Lower Than 30 From Bam
Answer: Filtration Of Reads With Length Lower Than 30 From Bam
Answer: How to compare the quality of assemblies
Comment: How to compare the quality of assemblies
Bedtools merge but only if intersection exists
Answer: Korean reference file
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Recent Replies
Answer: Prediction of Ribosomal RNA Genes Using RNAmmer Software by colindaven 6.3k
Another alternative is the truly free implementation barrnap https://github.com/tseemann/barrnap. This is also installable via conda so qui…
Comment: Filtration Of Reads With Length Lower Than 30 From Bam by Hagen • 0
thanks! This saved me quite some time, I was about to write code to calculate the aligned length from the CIGAR. But this can be done with …
Comment: Per base sequence content failed miserably by Kai Xin • 0
will look into that. Thank you very much
Comment: Korean human genome reference file by SeoGyun • 0
Thanks..... But I want to do imputation, so I have to make it as a vcf file, but the site only has a fatsa file....
Comment: miRNAs quantification using mirdeep2 tool by Ashok • 0
thank you for your reply https://github.com/rajewsky-lab/mirdeep2/blob/master/TUTORIAL.md i saw this github tutorial for miRNA quantifica…
Comment: Load a full GFF3 into annotation track using arrow (Apollo) by cmdcolin ★ 3.8k
Hi there, I let a developer know of this thread and they said they can check it out next week. Feel free to post to the https://github.com/…
Comment: How to get the reference panel for UKBB by 航太郎 • 0
Thanks for your guide!
Comment: Removing duplicates by joe ▴ 500
I'd try those OP @samuel recommends My guess is you're new to ONT, fast5 is the 'raw data' which is current over time...other than generat…
Comment: RNA seq differential expression analysis by swbarnes2 14k
No. Find a tutorial, try it, then if you have specific questions, ask of the galaxy help site.
Answer: Adding CB tag to bam file by swbarnes2 14k
Shouldn't you use PicardTools for this?
Comment: Downloaded pdb's on rcsb.org by Ram 43k
Sure. Or, one could do: bash try.bash "Homo sapiens" AHR | xargs -I v_pdb curl -s -o v_pdb.pdb https://files.rcsb.org/view/v_pdb.pdb
Comment: Downloaded pdb's on rcsb.org by iamsmor • 0
thank you so much
Comment: Downloaded pdb's on rcsb.org by GenoMax 141k
This may be the best option. Get the PDB ID's $ ./get.sh "Mus musculus" AHR 4M4X 5NJ8 5V0L 8H77 Then use `curl` to g…
Comment: Downloaded pdb's on rcsb.org by Ram 43k
It gives you the first 25 results though. I'll see if I can change that. EDIT: I've updated that number to 250. I'm hoping you won't need …
Comment: Downloaded pdb's on rcsb.org by iamsmor • 0
thank you very much
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