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1,000 results • Page
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Sort: Rank
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715
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159
replies
104k
views
100 follow
News:
The Biostar Handbook. A bioinformatics e-book for beginners.
training
tutorial
News
handbook
updated 4 months ago by
Biostar
1.5k • written 6.2 years ago by
Istvan Albert
96k
0
votes
0
replies
117
views
News:
Course - INTRODUCTION TO PYTHON PROGRAMMING FOR BIOLOGISTS
Bioinformatics
Programming
Python
18 hours ago by
carlopecoraro2
★ 2.2k
0
votes
0
replies
98
views
News:
Eukaryotic Metabarcoding course
eDNA
Metabarcoding
updated 2 days ago by
Ram
37k • written 2 days ago by
carlopecoraro2
★ 2.2k
0
votes
2
replies
135
views
News:
NCBI update complete. Aspera users please update your client.
NCBI
Submissions
GenBank
2 days ago by
PeterC_NCBI
▴ 180
0
votes
0
replies
93
views
News:
Course - Mass Spectrometry and Proteomics in R/Bioconductor
Bioconductor
MassSpectrometry
R
Proteomics
4 days ago by
carlopecoraro2
★ 2.2k
0
votes
0
replies
235
views
News:
Course - Machine Learning in R (for omics data)
Genomics
omics
MachineLearning
R
7 days ago by
carlopecoraro2
★ 2.2k
2
votes
0
replies
144
views
News:
Course - Reproducibility in Bioinformatics
Reproducibility
updated 2 days ago by
Ram
37k • written 8 days ago by
carlopecoraro2
★ 2.2k
0
votes
0
replies
92
views
News:
course - Multivariate data analysis with R and vegan
Statistics
MultivariateAnalysis
R
vegan
10 days ago by
carlopecoraro2
★ 2.2k
0
votes
2
replies
537
views
News:
Online Course - A Practical Introduction to NGS Data Analysis (February 01-03, 2023)
NGS
DNAseq
variant-calling
RNAseq
11 days ago by
David Langenberger
9.8k
0
votes
0
replies
165
views
News:
Bioinformatics courses in February
Genomics
BioinformaticsTraining
9 days ago by
carlopecoraro2
★ 2.2k
0
votes
0
replies
168
views
News:
Reminder: NCBI Aspera access, update Aspera Connect by Feb 1, 2023
Aspera
NCBI
SRA
GenBank
12 days ago by
PeterC_NCBI
▴ 180
1
vote
2
replies
263
views
News:
Course: Network Analysis in R
NetworkAnalyis
R
12 days ago by
carlopecoraro2
★ 2.2k
0
votes
0
replies
149
views
News:
de novo RNA-seq Analysis Workshop
virtual
workshop
rna
transcriptome
16 days ago by
mia.nahom
• 0
0
votes
0
replies
165
views
News:
Genomic Prediction course
Selective-Breeding
Genomic-Prediction
updated 2 days ago by
Ram
37k • written 19 days ago by
carlopecoraro2
★ 2.2k
1
vote
0
replies
231
views
News:
course: Meta-analysis in R
Statistics
MetaAnalysis
R
20 days ago by
carlopecoraro2
★ 2.2k
0
votes
0
replies
237
views
News:
GSEA in R/Bioconductor course
Bioconductor
R
GSEA
GeneSetEnrichmentAnalysis
21 days ago by
carlopecoraro2
★ 2.2k
0
votes
0
replies
221
views
News:
For NCBI Aspera access, update Aspera Connect by Feb 1, 2023
Aspera
NCBI
GenBank
22 days ago by
PeterC_NCBI
▴ 180
0
votes
0
replies
200
views
News:
Metabarcoding in Microbial Ecology
Metabarcoding
Qiime2
16S
MicrobialEcology
R
22 days ago by
carlopecoraro2
★ 2.2k
0
votes
0
replies
193
views
News:
Metagenomics tools recommeder system
NGS
Metagenomics
Recommender-system
updated 22 days ago by
Ram
37k • written 22 days ago by
KATA
• 0
0
votes
0
replies
187
views
News:
Hands-On NGS Data Analysis Workshops 2023
NGS
Workshop
RNA-Seq
DNA-Seq
25 days ago by
David Langenberger
9.8k
1
vote
5
replies
585
views
News:
Cancer Genomics course - 2 seats left
Genomics
Cancer-Genomics
R
updated 2 days ago by
Ram
37k • written 28 days ago by
carlopecoraro2
★ 2.2k
0
votes
0
replies
176
views
News:
Course on Generalised Additive Models In R
Statistics
GAMs
R
27 days ago by
carlopecoraro2
★ 2.2k
0
votes
1
reply
351
views
News:
Sex Chromosome Evolution course
Genomics
Sex-Chromosome-Evolution
updated 2 days ago by
Ram
37k • written 28 days ago by
carlopecoraro2
★ 2.2k
1
vote
2
replies
412
views
News:
New chat server (Discord) for bioinformatics
community
26 days ago by
Samuel Lampa
★ 1.3k
0
votes
0
replies
207
views
News:
Online course - Genome Assembly and Annotation
Long-reads
Genome-Annotation
Biodiversity
Genome-Assembly
updated 2 days ago by
Ram
37k • written 29 days ago by
carlopecoraro2
★ 2.2k
0
votes
3
replies
422
views
News:
NCBI BLAST ClusteredNR database now available for blastx and PSI-BLAST searches
PSI-BLAST
blastx
BLAST
NCBI
ClusteredNR
4 weeks ago by
PeterC_NCBI
▴ 180
1
vote
0
replies
516
views
News:
New ebook: From cell line to Command line to learn computational biology
snakemake
biology
unix
RNAseq
computational
5 weeks ago by
Ming Tang
★ 2.9k
0
votes
0
replies
312
views
News:
Winter School in Bioinformatics - last seats available
Genomics
Unix
RNA-seq
docker
updated 2 days ago by
Ram
37k • written 5 weeks ago by
carlopecoraro2
★ 2.2k
0
votes
0
replies
202
views
News:
Virtual RNA-seq Analysis (Model Organism) Workshop
virtual
expression
rna-seq
analysis
workshop
5 weeks ago by
mia.nahom
• 0
0
votes
0
replies
229
views
News:
Introduction to R Shiny course
WebApplications
R
RShiny
6 weeks ago by
carlopecoraro2
★ 2.2k
1
vote
0
replies
264
views
News:
New version of ElasticBLAST (1.0.0) available.
NCBI
ElasticBLAST
BLAST
6 weeks ago by
PeterC_NCBI
▴ 180
0
votes
1
reply
256
views
News:
Courses in January - still a few seats available
R-Shiny
Genomics
Unix
R
updated 2 days ago by
Ram
37k • written 6 weeks ago by
carlopecoraro2
★ 2.2k
0
votes
0
replies
150
views
News:
Sex Chromosome Evolution course
Genomics
Sex-Chromosome-Evolution
updated 6 weeks ago by
Ram
37k • written 6 weeks ago by
carlopecoraro2
★ 2.2k
0
votes
0
replies
193
views
News:
Cellosaurus release 44 is available
cellosaurus
cell-line
updated 7 weeks ago by
Ram
37k • written 7 weeks ago by
Amos Bairoch
▴ 110
0
votes
0
replies
172
views
News:
Introductory video to the Cellosaurus
cellosaurus
cell-line
updated 7 weeks ago by
Ram
37k • written 7 weeks ago by
Amos Bairoch
▴ 110
0
votes
3
replies
373
views
News:
Nvidia Clara Parabricks is FREE for R&D
nvidia
workflow
gpu
updated 7 weeks ago by
4galaxy77
2.6k • written 7 weeks ago by
Pierre Lindenbaum
152k
2
votes
3
replies
278
views
News:
NCBI Comparative Genome Viewer now allows searches for genes across aligned assemblies
Browser
NCBI
Alignments
Genome
7 weeks ago by
PeterC_NCBI
▴ 180
1
vote
6
replies
586
views
News:
Course - FLOW CYTOMETRY ANALYSIS WITH R/BIOCONDUCTOR
Bioconductor
FlowCytometry
R
updated 22 days ago by
synat.keam
▴ 70 • written 7 weeks ago by
carlopecoraro2
★ 2.2k
0
votes
0
replies
131
views
News:
INTRODUCTION TO ANALYTICAL PALEOBIOLOGY: FOSSIL RECORD BIASES, DIVERSITY, & BIOGEOGRAPHY
Biogeography
Paleobiology
R
7 weeks ago by
carlopecoraro2
★ 2.2k
1
vote
0
replies
159
views
News:
Analysis of Cancer Genomes Using R and Bioinformatic Tools
Genomics
Cancer-Genomics
R
updated 8 weeks ago by
Ram
37k • written 8 weeks ago by
carlopecoraro2
★ 2.2k
0
votes
0
replies
238
views
News:
course - GENOME ASSEMBLY USING OXFORD NANOPORE SEQUENCING
Long-reads
Assembly
Nanopore
Genome
8 weeks ago by
carlopecoraro2
★ 2.2k
0
votes
0
replies
127
views
News:
Online training - VERSION CONTROL FOR RESEARCHERS
Version
Control
Git
Github
8 weeks ago by
carlopecoraro2
★ 2.2k
0
votes
1
reply
201
views
News:
Research Training In NGS Data Analysis
analysis
data-analysis
updated 9 weeks ago by
Ram
37k • written 9 weeks ago by
RASALSI
• 0
0
votes
0
replies
244
views
News:
Bayesian regression modeling in R course
RegressionModeling
Bayesian
R
10 weeks ago by
carlopecoraro2
★ 2.2k
0
votes
4
replies
370
views
News:
Ensembl Release 104 and newer GTF files no longer have genes sorted by position
Ensembl
GTF
updated 7 weeks ago by
Ben_Ensembl
★ 2.2k • written 10 weeks ago by
dlaehnemann
▴ 10
0
votes
0
replies
183
views
News:
Genome Assembly and Annotation course
Annotation
Nanopore
GenomeAssembly
Pacbio
10 weeks ago by
carlopecoraro2
★ 2.2k
3
votes
0
replies
832
views
News:
Changes to the default NCBI BLAST nucleotide database (nt). Learn more and provide feedback!
NCBI
Databases
BLAST
11 weeks ago by
PeterC_NCBI
▴ 180
0
votes
0
replies
198
views
News:
Nextflow online training
Nextflow
Workflow
Reproducibility
updated 8 weeks ago by
Ram
37k • written 11 weeks ago by
carlopecoraro2
★ 2.2k
0
votes
2
replies
894
views
News:
:: FINAL CALL :: Next-Generation Sequencing Data Analysis: A Practical Introduction (December 12-14, 2022 in Munich, Germany)
rnaseq
dnaseq
sequencing
ngs
workshop
11 weeks ago by
David Langenberger
9.8k
0
votes
0
replies
229
views
News:
The Association for Single Cell Analysis (ASCA)
genomics
singlecell
metabolomics
sequencing
proteomics
11 weeks ago by
dnsv.ev
• 0
1,000 results • Page
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Recent Votes
Deseq2 with one factor and multiple levels
Answer: Error while trying to install salmon
Answer: Forcing Installation Of DMRcate
Gene Expression Omnibus Data Mining (IA): Quick and easy download of GEO data
SNP calling
Comment: Annotating ENS codes to gene name
1000 genomes project reference panel - GRCh38
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Recent Replies
Comment: PLINK2 selecting variants based on INFO score
by
chrchang523
9.9k
If you aren't willing to provide more precise information than this, sufficient for a reader to reproduce what you're seeing, I will delete…
Answer: Error while trying to install salmon
by
Chris
▴ 10
Donwloading the package from conda (https://anaconda.org/conda-forge/boost/files?version=1.60.0) worked for me wget https://anaconda.org/…
Answer: finding error to run edgeR, error in ploting MDS and after that in model matrix
by
Gordon Smyth
★ 5.4k
First issue is that GEO series matrix files can't be read using `read.delim`. Second issue is the data are from Agilent microarrays and …
Comment: PLINK2 selecting variants based on INFO score
by
m.c.roozen
• 0
I have tried that (the .pvar file contains the "1:10586" form as ID which I mentioned above) which leads to the same output as above, 0 var…
Answer: samtools markdup in Rsamtools
by
joe
▴ 350
You can run any system command from inside R using `system()`. This works well if there is a single command without many dependencies. For …
Comment: samtools markdup in Rsamtools
by
Pierre Lindenbaum
152k
> But other solutions are also fine: bash, nextflow, snakemake
Answer: samtools markdup in Rsamtools
by
ATpoint
68k
My honest opinion: Do processing of sequencing data on the standard command line with samtools. There is no need for the added complexity t…
Comment: To batch correct or analyse separately?
by
predeus
★ 1.8k
Another great and up-to-date resource is this: https://www.sc-best-practices.org/preamble.html
Comment: PLINK2 selecting variants based on INFO score
by
chrchang523
9.9k
The --exclude file must use the same variant IDs as your .pvar file. You should elaborate on what seemed to go wrong when you tried to arr…
Comment: phylogeny
by
炫
• 0
Hello, my problem is the same as yours, did you finally solve this problem?
Comment: phylogeny
by
炫
• 0
您好,我的问题和您的一模一样,请问您这个问题最终解决了吗
Comment: Issue with hmmcalibrate during tutorial.
by
apcreyes29
• 0
If that's the case then I'll just proceed then. Thank you!
Answer: To batch correct or analyse separately?
by
ATpoint
68k
Instead of writing that all down I recommend to read the relevant part of the Bioconductor scRNA-seq book (OSCA) which covers the "how's" a…
Answer: Issue with hmmcalibrate during tutorial.
by
Mensur Dlakic
★ 22k
Pretty sure that `hmmcalibrate` does not exist in HMMer version 3+ as the models are internally calibrated. I think you are using a manual …
Comment: High downstream gene expression
by
yoser4
▴ 10
Thank you for your reply. Your answer has helped me. I am a novice in scientific research, and the reading of literature is really poor. …
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