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News: The Biostar Handbook. A bioinformatics e-book for beginners.
training tutorial News handbook
updated 13 days ago by 1.1k • written 5.8 years ago by 94k
0
votes
0
replies
78
views
News: Seascape Genomics in R course
Genomics R Seascape Population
1 day ago by carlopecoraro2 ★ 2.1k
0
votes
0
replies
113
views
News: Cellosaurus API
line cell API
6 days ago by Amos Bairoch ▴ 110
0
votes
0
replies
121
views
News: Cellosaurus release 43 is available
line news cell knowledgebase
6 days ago by Amos Bairoch ▴ 110
0
votes
0
replies
86
views
News: Genomics Webinar: Using Mastermind’s New ClinVar Integration to Accelerate Clinical Diagnoses
genomics bioinformatics variant interpretation webinar database
7 days ago by Kate • 0
0
votes
0
replies
78
views
News: course: Population Genomic Inference from Low-coverage Whole-genome Sequencing Data
whole-genome genomics population low-coverage sequencing
updated 9 days ago by 21k • written 9 days ago by ★ 2.1k
0
votes
0
replies
77
views
News: :: FINAL CALL :: RNA-Seq Data Analysis Workshop (October 25 - 28, 2022 in Leipzig, Germany) - 2 seats left
RNA-Seq workshop transcriptomics
9 days ago by David Langenberger 9.8k
0
votes
0
replies
74
views
News: Getting the most out of R course - last call
ggplot2 R tidyverse
9 days ago by carlopecoraro2 ★ 2.1k
0
votes
0
replies
124
views
News: The NCTR Indel Calling from Oncopanel Sequencing Data Challenge Winners have been announced!
bioinformatics
12 days ago by sarah_p ▴ 10
1
vote
0
replies
97
views
News: Webinar (free) on Multimodal Single-Cell Data from winner of NeurIPS 2021
ATAC-seq CITE-seq scRNA-seq
15 days ago by Alexander ▴ 40
0
votes
0
replies
102
views
News: course Reproducible Analysis With R
R Reproducibility analysis Data
16 days ago by carlopecoraro2 ★ 2.1k
0
votes
0
replies
146
views
News: Virtual Genome Assembly workshop
Genome Workshop assembly Virtual
19 days ago by singh.vijender ▴ 50
10
votes
4
replies
415
views
News: Good morning
good morning
updated 19 days ago by 94k • written 20 days ago by 83k
6
votes
7
replies
2.1k
views
News: New in DiffBind: dba.plotProfile() - Peak profiles and profile heatmaps
DiffBind ChIP-seq deepTools visualization ATAC-seq
19 days ago by Rory Stark ★ 1.6k
0
votes
0
replies
165
views
News: Sex Chromosome Evolution course
Genomics Sex Evolution Bioinformatics Chromosome
23 days ago by carlopecoraro2 ★ 2.1k
0
votes
0
replies
137
views
News: Online training - Data visualization in R with ggplot2
Visualization ggplot2 R Data
4 weeks ago by carlopecoraro2 ★ 2.1k
1
vote
0
replies
194
views
News: Searching for people who can share experience (give free webinars/discuss) on multimodal single cell data
ATAC-seq CITE-seq scRNA-seq
4 weeks ago by Alexander ▴ 40
0
votes
0
replies
162
views
News: Online training - Introduction to Deep Learning for biologists
Python DeepLearning bigdata MachineLearning
5 weeks ago by carlopecoraro2 ★ 2.1k
0
votes
0
replies
152
views
News: 2023 EMBL Courses and Conferences
EMBL EMBLMalaria EESImaging
6 weeks ago by EMBL Events • 0
0
votes
0
replies
159
views
News: Online training -Getting the most out of R
R Science analysis Data
7 weeks ago by carlopecoraro2 ★ 2.1k
0
votes
0
replies
149
views
News: Online training - Cancer Genomics in R
Bioinformatics Genomics Cancer R
7 weeks ago by carlopecoraro2 ★ 2.1k
0
votes
0
replies
148
views
News: Online training - DNA methylation in plants and animals
OxfordNanopore DNAMethylation BSseq longreads PacBio
7 weeks ago by carlopecoraro2 ★ 2.1k
0
votes
0
replies
173
views
News: 3rd edition of the Analysis of RNA sequencing data with R/Bioconductor course.
RNAseq Bioconductor R
9 weeks ago by carlopecoraro2 ★ 2.1k
4
votes
1
reply
1.9k
views
News: 2014 ISCB Wikipedia Article Competition announcement
ISCB competition Wikipedia
written 8.2 years ago by ★ 2.0k
1
vote
2
replies
373
views
News: Online training - Introduction to Nextflow
Bionfirmatics Pipeline Workflow Netflow
7 weeks ago by carlopecoraro2 ★ 2.1k
4
votes
1
reply
261
views
News: Online Course - A Practical Introduction to NGS Data Analysis (September 26-28, 2022)
workshop ngs data-analysis
updated 10 weeks ago by 37k • written 11 weeks ago by 9.8k
0
votes
0
replies
234
views
News: Final Call! Tomorrow (7/8) is the Deadline for Phase 1 submissions of the NCTR Indel Calling from Oncopanel Sequencing Data Challenge!
oncopanel indelcalling bioinformatics
11 weeks ago by sarah_p ▴ 10
0
votes
0
replies
192
views
News: Automate your NGS data analyses and create reproducible/scalable pipelines with NextFlow
pipeline Nextflow automation
12 weeks ago by David Langenberger 9.8k
0
votes
1
reply
557
views
News: Hands-On RNA-Seq Data Analysis Workshop in Leipzig, Germany (October 25-28, 2022)
RNA-Seq Transcriptomics NGS Workshop
12 weeks ago by David Langenberger 9.8k
0
votes
3
replies
720
views
News: Less Than One Month Remaining until the Submission Deadline for Phase 1 of the NCTR Indel Calling from Oncopanel Sequencing Data Challenge!
oncopanel indelcalling bioinformatics
12 weeks ago by sarah_p ▴ 10
0
votes
0
replies
180
views
News: EBI Competency Hub Supporting competency-based training and professional development.
ebi carreer
3 months ago by Pierre Lindenbaum 149k
0
votes
0
replies
185
views
News: Introduction to Statistics in R for biologists
tydeverse R Statistics
3 months ago by carlopecoraro2 ★ 2.1k
1
vote
0
replies
178
views
News: Data analysis with the Tidyverse in July (18th-21st).
Visualization R Tidyverse data-analysis
updated 10 weeks ago by 37k • written 3 months ago by ★ 2.1k
1
vote
0
replies
157
views
News: Use your standard DNA variant caller for SNP calling in Bisulfite-Seq data
bisulfite BS-Seq methylation
3 months ago by David Langenberger 9.8k
0
votes
0
replies
179
views
News: online training - Data Visualization with Python
Python Data-Visualization
updated 10 weeks ago by 37k • written 3 months ago by ★ 2.1k
0
votes
0
replies
220
views
News: Cellosaurus release 42 is available
line cell biocuration knowledgebase database
3 months ago by Amos Bairoch ▴ 110
0
votes
0
replies
181
views
News: Online course- Reproducibility in Bioinformatics - 11-13 July
Docker Reproducibility Bioinformatics
3 months ago by carlopecoraro2 ★ 2.1k
0
votes
0
replies
220
views
News: Online statistics courses
R statistics
3 months ago by carlopecoraro2 ★ 2.1k
0
votes
1
reply
259
views
News: API for accessing SARS-COV-2 genomic data
rpackage sars genomics api covid
updated 3 months ago by 120k • written 3 months ago by • 0
2
votes
0
replies
254
views
News: UniProt: Annotation of biologically relevant ligands using ChEBI
binding protein site metal uniprot chebi
3 months ago by Elisabeth Gasteiger ★ 2.1k
3
votes
0
replies
255
views
News: Tutorial on SemiBin (metagenonomics binning tool). June 14 - online
metagenomics binning
updated 4 months ago by 120k • written 4 months ago by ▴ 60
0
votes
0
replies
168
views
News: Nanopore direct RNA Sequencing - online course
Sequencing direct Nanopore RNA
4 months ago by carlopecoraro2 ★ 2.1k
0
votes
0
replies
164
views
News: ONLINE COURSE - LINEAR MIXED MODELS IN R - September 26th-30th
Models Mixed R
4 months ago by carlopecoraro2 ★ 2.1k
7
votes
1
reply
347
views
News: NGSymposium - Conference in Computational Biology, 23-24.09
ML statistics conference ngschool
4 months ago by kzkedzierska ▴ 290
0
votes
0
replies
198
views
News: ONLINE course "Population genomic inference from low-coverage whole-genome sequencing data"
lcWGS Genomics Population
4 months ago by carlopecoraro2 ★ 2.1k
0
votes
0
replies
211
views
News: Online course - Metabarcoding in microbial Ecology
Ecology Metabarcoding Qiime2 Bioinformatics Microbial
4 months ago by carlopecoraro2 ★ 2.1k
3
votes
1
reply
288
views
News: Free web seminars related to small non-coding RNA bioinformatics
eu microRNA coding non club bioinformatics RNA small
4 months ago by laurent.guyon ▴ 60
0
votes
0
replies
197
views
News: ONLINE COURSE - RADseq data analysis using Stacks
Phylogenomics Population RADseq Genomics Stacks
4 months ago by carlopecoraro2 ★ 2.1k
0
votes
0
replies
180
views
News: Online course - Developing R/Bioconductor packages for genomics
develptment Bioconductor R Bioinformatics packages
4 months ago by carlopecoraro2 ★ 2.1k
1
vote
0
replies
302
views
News: Phase 1 of the NCTR Indel Calling from Oncopanel Sequencing Data Challenge is now live!
indelcalling oncopanel bioinformatics
4 months ago by sarah_p ▴ 10
1,000 results • Page 1 of 20
Recent Votes
Answer: creating a txt file with absolute path to each directory
Retrieve GFF3 file from ncbi
Retrieve GFF3 file from ncbi
C: How can I find the critical genes for the pathway targeted by my miRNAs?
C: How can I find the critical genes for the pathway targeted by my miRNAs?
Answer: How to preserve the order of dataframe variables in R?
Answer: How to preserve the order of dataframe variables in R?
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Recent Replies
Comment: Why the number of genes decreased after dds (DESeqDataSetFromMatrix)? by Devon Ryan 102k
Just a guess, but count how many have 0 counts in all samples before and after running that function.
Comment: Supergnova stuck in tutorial by Gerard • 0
Thanks for all the suggestions. I created an issue but, unfortunately, was not answered. I managed to solve the issues I was having changi…
Comment: creating a txt file with absolute path to each directory by arshad1292 ▴ 70
Thank you!
Answer: Microarray DEG analysis visualisation by antmantras ▴ 30
You could make a volcano plot of all the genes in your DEG and highlight the one that you are interested in. Although you will be only usin…
Comment: Fasta headers column spilt or selection by antmantras ▴ 30
Yeah, I know it can be written with: grep ">" myfile.fasta | awk '{print $3}' > output.txt if one is only looking for the names of th…
Comment: Extracting only soft/hard clipped reads from a bam file by d-cameron ★ 2.7k
If you want multithreaded I/O the command-line is a pretty annoying (since you're running a tool within gridss, not the whole pipeline): yo…
Answer: Extracting only soft/hard clipped reads from a bam file by d-cameron ★ 2.7k
Have you considered using a SV breakpoint calling tool (using a reference that includes both host and viral sequence), or a viral integrati…
Answer: Reads mapping to pseudogenes using RSubread by Gordon Smyth ★ 5.0k
There isn't anything in your post to suggest that subread is missing FTH1 or it's exons. If these reads match the pseudogene region even sl…
Comment: Asking for introduction of a database by mohamadzare6022 • 0
Thank you for your suggestion; I used the STRING database and LEM (eukaryotic linear motifs). My protein has different Motifs and Domains …
Answer: Converting PLINK binary files into python dataframe by Istvan Albert 94k
Pandas is notoriously slow at reading in large datasets I would recommend an alternative like polars or datatable: * https://github.com/p…
Comment: Error in converting vcf file to plink format by Madhawa ▴ 10
Thank you so much! Will try to run the analysis with the file and check it! Thanks again!!
Comment: Error in converting vcf file to plink format by GenoMax 120k
As long as the file is not empty it should be good.
Comment: Error in converting vcf file to plink format by Madhawa ▴ 10
____________________________________________ I just tried with plink 1.9 and it worked pretty well!!!! Thank you once again!
Comment: Error in converting vcf file to plink format by Madhawa ▴ 10
Thank you so much for your reply with clarification. I will try with plink 1.9!
Comment: Error in converting vcf file to plink format by chrchang523 9.7k
This error is a consequence of using plink 1.07, which has to load the entire dataset into memory, instead of plink 1.9, which is capable o…
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