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News: Ensembl Release 104 and newer GTF files no longer have genes sorted by position
Ensembl GTF
updated 11 weeks ago by ▴ 110 • written 12 months ago by ▴ 30
0
votes
0
replies
245
views
News: NCBI ClinVar XML update to accomodate somatic variants
SNP NCBI XML ClinVar
11 weeks ago by PeterC_NCBI ▴ 370
0
votes
0
replies
210
views
News: Workshop on Virtual Screening on Drug Discovery from scratch (15-16 September, 2023 : 07.00 - 09.00 PM IST)
workshop virtual-screening
updated 8 weeks ago by 41k • written 11 weeks ago by • 0
0
votes
0
replies
228
views
News: RNAseq data analysis with R/Bioconductor
R RNA-seq Bioconductor
updated 8 weeks ago by 41k • written 12 weeks ago by ★ 2.4k
0
votes
0
replies
249
views
News: Course - RNAseq in non-model organisms
R Differential-Expression-Analysis RNA-seq Bioconductor
updated 8 weeks ago by 41k • written 12 weeks ago by ★ 2.4k
4
votes
2
replies
406
views
News: Standalone NCBI ClusteredNR database now available for download
ClusteredNR NCBI standalone BLAST
3 months ago by PeterC_NCBI ▴ 370
0
votes
0
replies
240
views
News: Virtual Variant Detection Workshop: September 11-14, 2023
tutorial detection genomics workshop variant
3 months ago by mia.nahom ▴ 10
0
votes
0
replies
235
views
News: Introduction to Deep Learning for Biologists course
Python Deep-Learning Machine-Learning
updated 3 months ago by 41k • written 3 months ago by ★ 2.4k
0
votes
0
replies
227
views
News: Course - Reproducibility Data Analysis with R
R renv Version-Control Reproducibility
updated 8 weeks ago by 41k • written 3 months ago by ★ 2.4k
0
votes
0
replies
320
views
News: Online course: Easily analyze single cell RNA-seq data with Cellenics®, a user-friendly web-based platform
scRNA-seq training single-cell-RNA-seq
updated 3 months ago by 41k • written 3 months ago by • 0
0
votes
0
replies
372
views
News: Join Our Online Course: Incorporating Paleogenomes into Evolutionary Genomics Studies
Paleogenomics Genomics aDNA Adaptation-Genomics
updated 3 months ago by 41k • written 3 months ago by ★ 2.4k
0
votes
0
replies
239
views
News: Course on Phylogenomics
Phylogenetic-Inference Divergence-Time-Estimation Genomics Phylogenomics
updated 3 months ago by 41k • written 3 months ago by ★ 2.4k
0
votes
0
replies
269
views
News: Course. -Multivariate Data Analysis with R and vegan
R vegan MultivariateDataAnalysis
3 months ago by carlopecoraro2 ★ 2.4k
3
votes
2
replies
489
views
News: NCBI BLAST+ 2.14.1 Now Available
NCBI BLAST
3 months ago by PeterC_NCBI ▴ 370
1
vote
0
replies
219
views
News: Course - Introduction to CRISPR
CRISPR Evolution GenomeEditing
3 months ago by carlopecoraro2 ★ 2.4k
0
votes
0
replies
233
views
News: Upcoming Learning Opportunities and Important Updates
R Programming aDNA Paleogenomics
3 months ago by carlopecoraro2 ★ 2.4k
3
votes
5
replies
2.1k
views
News: (18 August - "Enzyme Stability Prediction") A free webinar on on-going CAFA5 (Critical Assessment of Functional Annotation of proteins) challenge
gene-ontology CAFA protein
3 months ago by Alexander ▴ 200
0
votes
0
replies
277
views
News: Spatial Omics course
Spatial-Omics Multiplexed-Image-Analysis
updated 8 weeks ago by 41k • written 3 months ago by ★ 2.4k
1
vote
0
replies
355
views
News: Generalized Additive Models in R
R GAMs Courses
3 months ago by carlopecoraro2 ★ 2.4k
0
votes
0
replies
237
views
News: NIAID Data Ecosystem Discovery Portal
databases data opendata api
3 months ago by ehaag ▴ 20
0
votes
0
replies
309
views
News: Course - Structural Variant detection and comparison
SVs Structural-Variants
updated 3 months ago by 41k • written 3 months ago by ★ 2.4k
0
votes
0
replies
280
views
News: course -Developing R/Bioconductor Packages for Genomics
R Genomics Bioconductor
updated 4 months ago by 41k • written 4 months ago by ★ 2.4k
4
votes
3
replies
794
views
News: You may need to cleanup duplicate NCBI BLAST nt database volumes on your system
databases NCBI BLAST
3 months ago by PeterC_NCBI ▴ 370
0
votes
0
replies
303
views
News: Course - Data Visualization in R with ggplot2
R Data-Visualization ggplot2
updated 4 months ago by 41k • written 4 months ago by ★ 2.4k
38
votes
7
replies
1.9k
views
News: 2 last seats available - 7th Berlin Summer School in NGS Data Analysis (September 4-8 in Berlin)
Transcriptomics DNA-Seq Variant-Calling RNA-Seq
4 months ago by David Langenberger 10k
9
votes
4
replies
2.3k
views
7 follow
News: fastp 0.22 released, with new FASTQ deduplication feature.
fastp
updated 4 months ago by 41k • written 2.3 years ago by ★ 2.5k
0
votes
0
replies
359
views
News: Course - RADseq data analysis with Stacks
RADseq Phylogenomics Stacks Population-genomics
updated 4 months ago by 41k • written 4 months ago by ★ 2.4k
0
votes
0
replies
313
views
News: course - DNA METHYLATION IN ECOLOGY AND EVOLUTION
Non-Model-Organisms DNA-Methylation BS-seq
updated 4 months ago by 41k • written 4 months ago by ★ 2.4k
2
votes
0
replies
425
views
News: Registration open for Nextflow Summit 2023, and free online Nextflow / nf-core training
nextflow
4 months ago by Marcel Ribeiro-Dantas ▴ 450
0
votes
0
replies
324
views
News: 2-day Course on Introduction to Nextflow
Workflow Reproducibility Nextflow
updated 5 months ago by 41k • written 5 months ago by ★ 2.4k
0
votes
0
replies
290
views
News: Physalia courses in September
Genomics R Data-Science
updated 5 months ago by 41k • written 5 months ago by ★ 2.4k
0
votes
0
replies
345
views
News: Cellosaurus release 46
knowledgebase cell-line cellosaurus
5 months ago by Amos Bairoch ▴ 110
0
votes
0
replies
263
views
News: Course - Data Manipulation and Visualization in Python
Data-Manipulation Data-Visualisation Python
updated 5 months ago by 41k • written 5 months ago by ★ 2.4k
0
votes
0
replies
408
views
News: Kindle edition of book NO LONGER available. Book available for free
Computational-Biology
5 months ago by sinha.shriprakash ▴ 20
0
votes
0
replies
367
views
News: Course on Generalised Linear Mixed Models in R
GLMM R Statistics Mixed-Models
updated 5 months ago by 41k • written 5 months ago by ★ 2.4k
0
votes
0
replies
365
views
News: Course - Network Analysis in Systems Biology with R/Bioconductor
R Systems-Biology Network-Analysis Bioconductor
updated 4 months ago by 41k • written 5 months ago by ★ 2.4k
0
votes
0
replies
271
views
News: course on Reproducibility data analysis with R
R Reproducibility Git Github
5 months ago by carlopecoraro2 ★ 2.4k
38
votes
8
replies
1.3k
views
6 follow
News: What happens when a bioinformatician has his own genome sequenced for $300?
DNAseq DNA WGS
updated 5 months ago by 35k • written 5 months ago by 10k
4
votes
0
replies
475
views
News: A Practical Introduction to Single-Cell RNA-Seq Data Analysis (November 8-10, 2023 in Berlin, Germany)
NGS RNA-Seq single-cell workshop
5 months ago by David Langenberger 10k
0
votes
0
replies
537
views
News: Hands-On NGS Data Analysis Courses 2023
RNA-seq DNA-seq Workshop
updated 5 months ago by 41k • written 5 months ago by 10k
1
vote
0
replies
346
views
News: Course - Introduction to Deep Learning for biologists
Genomics Deep-Learning Python NGS
updated 5 months ago by 41k • written 5 months ago by ★ 2.4k
1
vote
0
replies
351
views
News: Good bioinformatics training resources
NGS
updated 5 months ago by 158k • written 5 months ago by ▴ 80
0
votes
0
replies
422
views
News: Generalized Linear Models (GLM) course in R
R GLM statistics
6 months ago by carlopecoraro2 ★ 2.4k
0
votes
0
replies
393
views
News: course - Advanced Python programming
Python Deep-Learning Machine-Learning
updated 4 months ago by 41k • written 6 months ago by ★ 2.4k
3
votes
2
replies
579
views
News: Participate in a NCBI/NIAID Virtual Codeathon: VCF Files for Population Genomics, Jul 31 - Aug 4, 2023
VCF SARS-CoV-2 NCBI Codeathon
6 months ago by PeterC_NCBI ▴ 370
0
votes
0
replies
302
views
News: Virtual Genome Annotation Workshop
annotation genome workshop
6 months ago by mia.nahom ▴ 10
0
votes
0
replies
528
views
News: Course - Longitudinal data analysis in R
Longitudinal-Data R Genomics
updated 6 months ago by 41k • written 6 months ago by ★ 2.4k
0
votes
0
replies
313
views
News: New version of ElasticBLAST (1.1.0) available from NCBI
ElasticBLAST BLAST. NCBI
6 months ago by PeterC_NCBI ▴ 370
0
votes
0
replies
298
views
News: Course - Introduction to CRISPR for Ecology and Evolution Studies
Genomics CRISPR
6 months ago by carlopecoraro2 ★ 2.4k
0
votes
0
replies
1.2k
views
News: GWAS course
GWAS R
updated 6 months ago by 41k • written 6 months ago by ★ 2.4k
1,000 results • Page 2 of 20
Recent Votes
Comment: 4 Fastq files for a single run generated by 10X
Comment: 4 Fastq files for a single run generated by 10X
Answer: How do you generate TMM normalized counts using EdgeR?
The Biostar Handbook. A bioinformatics e-book for beginners.
GEO dataset Microarray data analysis help
C: Batch effects : ComBat or removebatcheffects (limma package) ?
Answer: Batch effects : ComBat or removebatcheffects (limma package) ?
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Recent Replies
Comment: 4 Fastq files for a single run generated by 10X by hkarakurt ▴ 180
Thank you for your detailed answer. I will check the reads and compare them with chemistry manual as you suggested. Thank you again for yo…
Comment: Microarray batch correction method suggestions by Sumeet • 0
Thank you @atpoint for your response. However, aim of analysing to generate a matrix with all dataset available after batch correction.
Comment: what should I do if I get a compromised sample of scRNA-seq data? by ATpoint 78k
Agreed. I would just force the cells to 5000 or so, and then proceed with the normal QC. If there's a lot of trash "cells" in the dataset t…
Comment: How to download multiple genome files using command line (MacOS) using datasets by rj.rezwan • 0
you should use the `wild cards` to download all the given above GCF files. Moverover, you can use the commands of `curl` , `wget` and `slow…
Comment: Microarray batch correction method suggestions by ATpoint 78k
This has been asked so many times before. Analyse them separately, then make a statement on reproducibility of results using a meta-analysi…
Comment: Microbial gene coverage from blast result by aanchal.yadav • 0
What is qcovhsp (high scoring segment pair) in BLAST output. Can we use this parameter to calculate the gene coverage?
Answer: Best way to normalize transcript reads data for PCA & correlation and further bi by Jeremy ▴ 860
Scaling the data will give you Z-scores. This is a standard way of preparing data for PCA. I would also suggest trying a center-log-ratio…
Comment: How to resolve the error of protein lacking a stop codon when using GenomeThread by peanut • 0
Thank you for your answer,but after verifying the protein file, it seems there is no problem. Even if there are missing codons, the program…
Comment: Help with gatk CreateSequenceDictionary by Chris ▴ 230
It worked! Thanks Matt!
Comment: Finding human .vcf files online to download by cmdcolin ★ 3.4k
i can't really tell you why your code doesn't work if you dont provide it. and, if you describe as much as possible what your goals are, th…
Answer: Help with gatk CreateSequenceDictionary by MatthewP ★ 1.3k
maybe try?: -R /variant_calling/Desktop/demo/supporting_files/hg38/hg38.fa -O /variant_calling/Desktop/demo/supporting_files/hg38/hg3…
Comment: Java error while running HiCDC overview code by Brian Bushnell 20k
Looks like you have corrupt or improperly-formatted input. It's expecting to parse a floating-point number where the word "score" appears.…
Comment: what should I do if I get a compromised sample of scRNA-seq data? by dsull ★ 5.1k
The knee plot is just one type of QC. I'd say just proceed with your analysis and see if you observe anything funky (analysis itself is a Q…
Comment: Annotation GTF/GFF Arabidopsis thaliana by enriquesan • 0
...........
Comment: FastQC without yellow box by lobelino • 0
Thank you for your answer.
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