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News: Online course: Computation Tumor Evolution
R Cancer-Genomics Tumor-Evolution Genomics
updated 11 weeks ago by 43k • written 11 weeks ago by ★ 2.5k
0
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170
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News: Course live online Intro Bayesian Analyses, March 4-8, 2024
R python bayesian
11 weeks ago by Sole • 0
0
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1
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944
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News: FINAL CALL: RNA-Seq Data Analysis Workshop (March 11 - 14, 2024 in Berlin, Germany)
NGS RNA-Seq Workshop
11 weeks ago by David Langenberger 11k
0
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0
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222
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News: Online course : Meta-Analysis in R
R Meta-Analysis Statistics
updated 11 weeks ago by 43k • written 11 weeks ago by ★ 2.5k
1
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0
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187
views
News: Cellosaurus release 48 is available
cell-line biocuration cellosaurus knowledgebase
12 weeks ago by Amos Bairoch ▴ 120
0
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0
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230
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News: Online course: Genome Assembly Using Oxford Nanopore Sequencing
Genome-Assembly Nanopore
updated 12 weeks ago by 43k • written 12 weeks ago by ★ 2.5k
0
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247
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News: BLAST FASTA Files Will No Longer Be Available on the FTP Site Effective April 2024
NCBI BLAST
12 weeks ago by PeterC_NCBI ▴ 410
0
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0
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234
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News: EMBL-EBI Training | Systems biology: from large datasets to biological insight
systems
3 months ago by EMBL Events ▴ 10
0
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0
replies
199
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News: Online course - Sex Chromosome Evolution
Evolution Genomics Sex-Chromosome
updated 3 months ago by 43k • written 3 months ago by ★ 2.5k
0
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1
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801
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News: LAST CALL: Online Course - A Practical Introduction to NGS Data Analysis (February 28 - March 1, 2024)
NGS Online-Workshop
updated 3 months ago by 43k • written 3 months ago by 11k
7
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2
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1.1k
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News: NGS Data Analysis Workshops 2024
scRNA-seq dna-seq rna-seq nextflow
3 months ago by David Langenberger 11k
0
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0
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232
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News: Online course: Generalized Additive Models (GAMs) in R
R Statistics Gams
3 months ago by carlopecoraro2 ★ 2.5k
0
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0
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259
views
News: Online course - Introduction to Python for biologists
Python Programming NGSData
3 months ago by carlopecoraro2 ★ 2.5k
1
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0
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197
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News: Online course - Introduction to Machine Learning in R for omics data
R Omics MachineLearning StatisticalLearning
3 months ago by carlopecoraro2 ★ 2.5k
0
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0
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188
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News: Online course - Flow cytometry data analysis with R/Bioconductor
R Flow-Cytometry Bioconductor
updated 3 months ago by 43k • written 3 months ago by ★ 2.5k
0
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1
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309
views
News: Reminder: NCBI ClinVar XML update to accommodate somatic variants coming Jan 29, 2024
SNP XML ClinVar NCBI
3 months ago by PeterC_NCBI ▴ 410
4
votes
0
replies
198
views
News: Transform Your Research with Our NGS Data Analysis Online Course!
DNAseq NGS Biologists OnlineCourse RNAseq
3 months ago by David Langenberger 11k
0
votes
0
replies
243
views
News: 3rd edition of the Winter School in Bioinformatics - Online February 26 - March 1
genomics reproducibility phylogenomics transcriptomics
3 months ago by carlopecoraro2 ★ 2.5k
0
votes
0
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576
views
News: course - Reproducibility in Bioinformatics
Docker Reproducibility
written 13 months ago by ★ 2.5k
0
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1
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370
views
News: Online Course - Genomic Prediction
Genomic-Prediction Selective-Breeding
updated 3 months ago by 43k • written 3 months ago by ★ 2.5k
0
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0
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271
views
News: Flow cytometry data analysis with R/Bioconductor course
FlowCytometry R Bioconductor
4 months ago by carlopecoraro2 ★ 2.5k
2
votes
2
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522
views
News: Unix and Shell Scripting for Bioinformatics course
Bash Unix Shell-Scripting
4 months ago by carlopecoraro2 ★ 2.5k
0
votes
0
replies
318
views
News: Bayesian Data Analysis in R course
R Bayesian-Statistics
updated 4 months ago by 43k • written 4 months ago by ★ 2.5k
0
votes
0
replies
327
views
News: Practical Hands-On Introduction to R course
R Tidyverse Data-Analysis
updated 4 months ago by 43k • written 4 months ago by ★ 2.5k
0
votes
0
replies
294
views
News: Landscape Genomics course at the EPFL in Lausanne, Switzerland
genomics Landscape-Genomics
updated 4 months ago by 43k • written 4 months ago by ★ 2.5k
0
votes
0
replies
281
views
News: New version of ElasticBLAST (1.2.0) available from NCBI
ElasticBLAST NCBI BLAST
4 months ago by PeterC_NCBI ▴ 410
0
votes
0
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277
views
News: Course. - Gene Set Enrichment Analysis in R/Bioconductor - ONLINE, 22-25 January
R Gene-Set-Enrichment-Analysis GSEA Bioconductor
updated 4 months ago by 43k • written 4 months ago by ★ 2.5k
0
votes
0
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291
views
News: University of Connecticut Single Cell RNA-seq Workshop December 12-15, 2023
expression singlecell rnaseq
4 months ago by mia.nahom ▴ 10
0
votes
0
replies
272
views
News: Online course: Introduction to Python, February 12th-March 11th, 2024
python courses
4 months ago by Sole • 0
0
votes
1
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369
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News: Course: Genome Assembly and Annotation
Biodiversity Genome-Assembly Genome-Annotation Long-reads
updated 4 months ago by 43k • written 4 months ago by ★ 2.5k
0
votes
0
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347
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News: GWAS course
R GWAS
updated 4 months ago by 43k • written 5 months ago by ★ 2.5k
3
votes
0
replies
296
views
News: NCBI BLAST+ 2.2.15 now available for download
NCBI Taxonomy BLAST
5 months ago by PeterC_NCBI ▴ 410
0
votes
0
replies
298
views
News: Course - Introduction to R Shiny
R Data-Visualisation Shiny
updated 4 months ago by 43k • written 5 months ago by ★ 2.5k
0
votes
0
replies
273
views
News: Online expert taught RNA-Seq workshop
workshop
5 months ago by fturner ▴ 10
0
votes
0
replies
314
views
News: Course - RNAseq in non-model organisms
Pacbio RNA-seq Nanopore
updated 4 months ago by 43k • written 5 months ago by ★ 2.5k
0
votes
0
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330
views
News: Next-Generation Sequencing Data Analysis: A Practical Introduction (Nov 29 – Dec 1 in Munich, Germany)
RNAseq DNAseq NGS Workshop
5 months ago by Lars ★ 1.0k
0
votes
0
replies
320
views
News: Course - Computational Tumor Evolution
Tumor-Evolution Cancer-Genomics
updated 4 months ago by 43k • written 5 months ago by ★ 2.5k
0
votes
3
replies
1.4k
views
News: :: FINAL CALL :: A Practical Introduction to NGS Data Analysis (Nov 29 - Dec 1, 2023 in Munich, Germany) - only 2 seats left
DNA-Seq NGS RNA-Seq Workshop
5 months ago by David Langenberger 11k
0
votes
0
replies
354
views
News: Course: Genome Assembly using Oxford Nanopore Sequencing
Genome-Assembly Nanopore
updated 4 months ago by 43k • written 5 months ago by ★ 2.5k
0
votes
0
replies
312
views
News: Genemod - Lab Management Software
lab-management-software research
updated 5 months ago by 43k • written 5 months ago by • 0
1
vote
0
replies
314
views
News: course - Advanced Python Programming
Python-Programming
updated 5 months ago by 43k • written 5 months ago by ★ 2.5k
4
votes
2
replies
2.9k
views
News: New ebook: From cell line to Command line to learn computational biology
unix snakemake computational-biology RNA-seq
5 months ago by Ming Tommy Tang ★ 3.9k
0
votes
0
replies
393
views
News: GWAS course
R GWAS
updated 5 months ago by 43k • written 5 months ago by ★ 2.5k
0
votes
0
replies
332
views
News: Course - Introduction to Bayesian Data Analysis
R Statistics Bayesian Regression-Modeling
updated 4 months ago by 43k • written 5 months ago by ★ 2.5k
3
votes
0
replies
544
views
News: gnomAD v4 released
gnomad
5 months ago by Pierre Lindenbaum 161k
0
votes
0
replies
329
views
News: Course - Introduction to Machine Learning in R
R Statistical-Learning Omics Machine-Learning
updated 5 months ago by 43k • written 5 months ago by ★ 2.5k
0
votes
0
replies
412
views
News: Spatial Omics and Multiplexed Image Analysis course
Spatial-Omics Multiplexed-Image-Analysis
updated 5 months ago by 43k • written 5 months ago by ★ 2.5k
0
votes
0
replies
350
views
News: Virtual de novo RNA-seq (transcriptomics) Workshop: November 13-16, 2023
workshop RNA-seq transcriptomics
updated 5 months ago by 43k • written 5 months ago by ▴ 10
1
vote
0
replies
390
views
News: course - Comparative Genomics
Comparative-Genomics
updated 5 months ago by 43k • written 5 months ago by ★ 2.5k
0
votes
0
replies
404
views
News: Online course Python Machine Learning in Biology, November 16, 2023
machine-learning python course
updated 6 months ago by 43k • written 6 months ago by • 0
1,000 results • Page 2 of 20
Recent Votes
Detecting somatic variants in non-tumor tissue without normals
Answer: Sequence read length shorter than flow cell specification
Answer: Sequence read length shorter than flow cell specification
Comment: Why gatk VariantAnnotator required bam and coverage files
A: Generate Vcf.Gz File And Its Index File Vcf.Gz.Tbi
Visualization of ChIP-seq data using Heatmaps (Updated: 06/10/16)
Answer: How do I get the 3bp sequence on either side of a co-ordinate
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Comment: Why gatk VariantAnnotator required bam and coverage files by QX • 0
thank you!
Comment: Treatment VS Control in Single Cell RNAseq analysis by kilcdincer ▴ 10
Hello, I have more or less same experimental setting and was wondering how you proceeded with your analysis? Can I reach its GitHub reposit…
Comment: BLAST using both nucleotides and taxonomic local databases by GenoMax 141k
> I ask this as some BLAST command fields as scinames or sblastnames do not give any output with a classic nt BLAST If that information is…
Answer: BLAST using both nucleotides and taxonomic local databases by 5heikki 11k
This has been discussed [many times][1] [1]: https://www.biostars.org/p/76551/
Answer: why renaming Idents in Seurat object doesn't work? by Bioinfotec ▴ 10
I think when you give indent to seuObj : Idents(seuObj) <- 'RNA_snn_res.0.1' You may wrongly assign other value to it such as …
Answer: ScRNAseq-How to correctly choose cell type marker genes by Bioinfotec ▴ 10
In fact, there is no gold standard for cell type annotation. To achieve correct cell type classification, you can combine the two methos. F…
Answer: ScRNA data question by Bioinfotec ▴ 10
In violin plot, a dot represents a cell. Actually, the straight lines you see in your infected image just means these cells have the same e…
Comment: Sequence read length shorter than flow cell specification by GenoMax 141k
> the have sent data with different sequencing read lengths: 55bp pair ended and 80bp single ended If they sent data that is not what you…
Comment: How to know synonymous and non-synonymous SNPs from transcriptome sequencing by rohitsatyam102 ▴ 840
I have some off-the-chart dN/dS values for few genes (>20) when using your script on VCF obtained from a 20K plasmodium genomes (pf7K). | …
Answer: Sequence read length shorter than flow cell specification by ATpoint 82k
It is the amount of reagent in the kit that determines read length. Sometimes index cycle reagents are allocated to R1/R2 or they used anot…
Comment: Why gatk VariantAnnotator required bam and coverage files by Pierre Lindenbaum 161k
you don't need the bam file https://gatk.broadinstitute.org/hc/en-us/articles/13832654601755-VariantAnnotator : VariantAnnotator …
Comment: GAPIT p-value significance threshold by ginellegrenier • 0
Hi, I was wondering if you have found a solution to this? Thanks!
Comment: PCA plot by jkim ▴ 170
cross posted in bioconductor. [https://support.bioconductor.org/p/9157968/][1] [1]: https://support.bioconductor.org/p/9157968/
Comment: ScRNA data question by bk11 ★ 2.3k
Which normalization method did you use for your data? I am guessing you had used SCTransform normalization for your data. Can you plot usin…
Comment: How to make a TSS enrichment plot in ATAC-seq analysis? by sp • 0
Hi Dan, I was wondering if you found out how to make the same graph with NFR and NBR regions with different curves. I was able to recreate…
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