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News: Sage Bionetworks is seeking researchers and data scientists to participate in software user research!
research software
updated 1 day ago by 39k • written 4.3 years ago by ▴ 30
1
vote
0
replies
860
views
News: Genomic Data Visualization using R
R
updated 1 day ago by 39k • written 4.3 years ago by ★ 2.3k
0
votes
0
replies
791
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News: Introduction to Bayesian Statistics using Stan
statistics
updated 1 day ago by 39k • written 4.3 years ago by ★ 2.3k
1
vote
0
replies
643
views
News: Naxatra: Advance program on RNAseq and bioinformatics
NGS hands-on-workshop RNA-Seq
updated 1 day ago by 39k • written 4.3 years ago by ★ 1.1k
6
votes
2
replies
898
views
News: Temporarily reduced functionality of Ensembl and Ensembl Genomes
Ensembl
updated 1 day ago by 39k • written 4.3 years ago by ★ 2.2k
1
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0
replies
607
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News: SNAKEMAKE course in Berlin. Last places available
Python
updated 1 day ago by 39k • written 4.3 years ago by ★ 2.3k
0
votes
0
replies
605
views
News: New Course: Advanced R Programming in Berlin
R Programming
updated 1 day ago by 39k • written 4.3 years ago by ★ 2.3k
0
votes
0
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982
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News: Training in Computational Drug Design and Discovery @NIH,USA, April 9-12,2019
biomedical drug-design training genomics RNA-Seq
updated 1 day ago by 39k • written 4.3 years ago by ▴ 130
0
votes
0
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577
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News: NATIONAL LEVEL HANDS ON WORKSHOP ON CRISPR-Cas9
CRISPR-Cas9 sequence next-gen
updated 1 day ago by 39k • written 4.3 years ago by • 0
0
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0
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1.2k
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News: New bioinformatics courses at Edinburgh Genomics
Training R Linux RNA-Seq Workshop
updated 1 day ago by 39k • written 4.3 years ago by ▴ 40
0
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0
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1.2k
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News: Metabarcoding Workshop. 4-8 March
metabarcoding next-gen
updated 1 day ago by 39k • written 4.3 years ago by ★ 2.3k
0
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0
replies
825
views
News: Phylogenomics course in Berlin. 20-24 May
RADseq phylogenomics
updated 1 day ago by 39k • written 4.3 years ago by ★ 2.3k
2
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0
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2.6k
views
News: 2nd Edition of the Biostar Handbook. New online course starts now.
biostar-handbook
updated 1 day ago by 39k • written 4.3 years ago by 98k
0
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0
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743
views
News: Course: Metagenomics and Barcoding in Greece, April 1-5, Transmitting Science
R next-gen
updated 1 day ago by 39k • written 4.3 years ago by • 0
0
votes
0
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993
views
News: Training in Statistical Analysis using R @NIH, March 20-22,2019
RStudio Statistical-Analysis training
updated 1 day ago by 39k • written 4.4 years ago by ▴ 130
10
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4
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1.5k
views
News: 3rd Berlin Summer School in NGS Data Analysis (2 seats just became available)
NGS RNA-Seq DNA-Seq
updated 1 day ago by 39k • written 4.4 years ago by 9.9k
0
votes
0
replies
735
views
News: SNAKEMAKE course in Berlin. Last 3 places
Pipeline Python
updated 1 day ago by 39k • written 4.4 years ago by ★ 2.3k
1
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0
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838
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News: NCBI Webinar: New Variation Services for Normalizing, Remapping, and Annotating Variants
Variation dbsnp API SPDI Clinvar
updated 1 day ago by 39k • written 4.4 years ago by ▴ 70
0
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1
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1.1k
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News: Squeezing biology out of statistics: Gene set and pathway analysis in HT data. Berlin, 11-15 March
R RNA-Seq next-gen ChIP-Seq
updated 1 day ago by 39k • written 4.4 years ago by ★ 2.3k
0
votes
0
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1.2k
views
News: Training in Metagenomics Data Analysis @ NIH, March 12-15,2019
Metagenomics Analysis Training
updated 1 day ago by 39k • written 4.4 years ago by ▴ 130
3
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2
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852
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News: BETA Testing Opportunity for new RNA-seq data analysis tool
beta-testing RNA-seq multi-omics ngs
updated 1 day ago by 39k • written 4.4 years ago by • 0
0
votes
0
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858
views
News: Snakemake: Reproducible and Scalable Bioinformatic Workflows
next-gen
updated 1 day ago by 39k • written 4.4 years ago by ★ 2.3k
5
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3
replies
1.3k
views
News: Top GitHub repos for biomedicine
open-source software GitHub
updated 1 day ago by 39k • written 4.4 years ago by ▴ 50
13
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9
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1.9k
views
News: Inviting NEW Biostars moderators to join Biostars slack channel
slack moderator
updated 4 days ago by 39k • written 5.0 years ago by 129k
0
votes
0
replies
1.0k
views
News: Training in Rosetta for Molecular Modeling and Design @NIH
Rosetta Molecular-Modeling Training
updated 1 day ago by 39k • written 4.4 years ago by ▴ 130
0
votes
0
replies
905
views
News: Workshop "Assembly and Annotation of genomes".Last Call
Annotation assembly genome
updated 1 day ago by 39k • written 4.4 years ago by ★ 2.3k
0
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0
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2.6k
views
News: Workshops in Bioinformatics in 2019
assembly R RNA-Seq Python
updated 1 day ago by 39k • written 4.4 years ago by ★ 2.3k
0
votes
0
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1.9k
views
News: Introduction to Machine Learning Workshop
Machine-Learning Big-Data Python
updated 1 day ago by 39k • written 4.4 years ago by ★ 2.3k
7
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3
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3.6k
views
News: Visualizing genomic data: techniques and challenges. Our interview with Dr. Malachi Griffith, Dr. Obi Griffith and Mr. Zachary Skidmore (The Griffith…
R RNA-Seq genome NGSdata
updated 15 days ago by 39k • written 5.9 years ago by ★ 2.3k
0
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0
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744
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News: 2-day course "Snakemake: Reproducible and Scalable Bioinformatic Workflows" in Berlin
next-gen
updated 2 days ago by 39k • written 4.4 years ago by ★ 2.3k
5
votes
0
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829
views
News: Free online Ensembl REST API training
perl rest-api jupyter python ensembl
updated 2 days ago by 39k • written 4.4 years ago by 23k
0
votes
0
replies
1.2k
views
News: Hands-On Workshop - Intro to NGS Data Analysis - only 2 free seats left
NGS RNA-Seq DNA-Seq
updated 2 days ago by 39k • written 4.4 years ago by 9.9k
0
votes
0
replies
1.0k
views
News: Training in Cloud Computing For Biomedical Researchers@NIH
cloud researchers
updated 2 days ago by 39k • written 4.5 years ago by ▴ 130
0
votes
0
replies
781
views
News: Coderefinery workshop - Teaching researchers in sustainable software development
Reproducibility FAIR git workshop
updated 2 days ago by 39k • written 4.5 years ago by 7.9k
0
votes
0
replies
1.2k
views
News: Course: Bayesian data analysis using brms and RStan in March 2019, Berlin, Germany
Statistics STAN BAYESIAN
updated 2 days ago by 39k • written 4.5 years ago by ★ 2.3k
1
vote
0
replies
774
views
News: Subchallenge 2 of the precisionFDA NCI-CPTAC Mislabeling Challenge
multiomics omics challenge
updated 2 days ago by 39k • written 4.5 years ago by ▴ 40
0
votes
0
replies
757
views
News: Genome assembly and annotation in Berlin
assembly genome next-gen
updated 2 days ago by 39k • written 4.5 years ago by ★ 2.3k
5
votes
0
replies
1.6k
views
News: Bioinformatics Contest 2019
bioinforussia bioinfcontest bioinfcontest2019
updated 2 days ago by 39k • written 4.5 years ago by ▴ 50
0
votes
0
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896
views
News: Training in Creating Plots, Graphs and Maps using R @ NIH, USA,February 12 - 15, 2019
Graphs Maps training R plots
updated 2 days ago by 39k • written 4.5 years ago by ▴ 130
5
votes
0
replies
2.1k
views
News: [UPDATED] Hands-On NGS Data Analysis Workshops 2019
NGS Bisulfite-Seq RNA-Seq DNA-Seq
updated 2 days ago by 39k • written 4.5 years ago by 9.9k
3
votes
0
replies
1.1k
views
News: Course on Programming for Evolutionary Biology
Evolution R genome Python
updated 2 days ago by 39k • written 4.5 years ago by ★ 2.2k
11
votes
11
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1.3k
views
8 follow
News: Python Data Visualization Course. Last 3 spots left
next-gen
updated 2 days ago by 39k • written 4.5 years ago by ★ 2.3k
0
votes
0
replies
895
views
News: Data manipulation and visualization with Python
python Big-Data genomics
updated 2 days ago by 39k • written 4.5 years ago by ★ 2.3k
0
votes
0
replies
666
views
News: Training in Advanced Transcriptomics (RNASeq) Analysis @ NIH, USA
training RNA-seq
updated 2 days ago by 39k • written 4.5 years ago by ▴ 130
0
votes
0
replies
772
views
News: Have you used deep learning in your research? If so, contribute to the Ten Simple Rules for Deep Learning in Biology paper!
deep-learning machine-learning
updated 2 days ago by 39k • written 4.5 years ago by ▴ 50
1
vote
0
replies
930
views
News: DataTech19 submission deadline and keynotes: Jared Lander, Mine Cetinkaya-Rundel, Debbie Bard
R data-science HPC python conference
updated 2 days ago by 39k • written 4.5 years ago by ▴ 20
0
votes
0
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942
views
News: SBCADD 2019 : 11th National Symposium Cum Workshop on Recent Trends in Structural Bioinformatics and Computer Aided Drug Design
Conference
updated 2 days ago by 39k • written 4.5 years ago by • 0
4
votes
1
reply
1.6k
views
News: scRNA-seq data analysis Workshop in Berlin
RNA-Seq next-gen
updated 2 days ago by 39k • written 4.5 years ago by ★ 2.3k
0
votes
0
replies
1.2k
views
News: Powerful and Intuitive Gene Expression Visualization Tools to Interpret Biological Signals---Bulk and Single Cell Data
scRNA-Seq webinar RNA-Seq single-cell
updated 2 days ago by 39k • written 4.5 years ago by ▴ 30
5
votes
2
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1.3k
views
News: Google Dataset Search
google
updated 3 days ago by 39k • written 4.7 years ago by 154k
440 results • Page 2 of 9
Recent Votes
Answer: IGV displays genomic coordinates in a 1-based system or 0-based?
RNAseq expression data log2 transformed has negative values.
Samtools: "Too Many Open Files"
Filtering bad quality probes in illumina microarray data
gene filtering for agilent microarray using Limma
A: Identification Of Significant Differences Between Phylogentic Trees Using Distan
A: How to filter vcf file on minimum genotype depth and quality for each sample
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Popular Question to Sam ▴ 150
Supporter to arsala521 ▴ 10
Teacher to Leszek 4.2k
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Recent Replies
Answer: Counting intronic reads in bulk RNA-seq by swbarnes2 13k
Are you sure this is appropriate for bulk RNASeq? I thought intronic reads for single cell were only counted in nuclear preps.
Answer: Single cell chemistry by swbarnes2 13k
Are you sure these samples are 10x? How likey is it that the sequencing group messed up and ran the samples wrongly?
Comment: How to deal with duplicated gene IDs in TCGA RNA expression data? by Vincent Laufer ★ 2.8k
are they distinct transcript IDs but the same gene ID? can you provide any additional context?
Comment: SyntaxError (Perhaps you forgot a comma?) in snakefile when running FastQC. by Dhatri Badri • 0
that didn't work either
Answer: Why are some WES VCFs larger than others? by Vincent Laufer ★ 2.8k
Hi @kermit and prash (and others)! Nice discussion. I wanted to offer some **biological rationales** in addition to the technical reasons …
Answer: SyntaxError (Perhaps you forgot a comma?) in snakefile when running FastQC. by WouterDeCoster 47k
There is no `:` after `rule fastqc`
Comment: SyntaxError (Perhaps you forgot a comma?) in snakefile when running FastQC. by Dhatri Badri • 0
sorry that was a typo while i was copying my code! I still get the same error
Comment: too many zeros in 16S rRNA amplicon sequencing data by andres.firrincieli 3.3k
You have too many ASV (40k) and I think this is a problem related to the denoising (DADA2) of NovaSeq 6000 sequencing data. Maybe this post…
Answer: SyntaxError (Perhaps you forgot a comma?) in snakefile when running FastQC. by Pierre Lindenbaum 154k
> fastq.gz". what is the dot after `fastq.gz" ` ?
Comment: DownsampleSam by Pierre Lindenbaum 154k
1) I think this is just a warning 2) there must be another error displayed 3) look at samtools view --subsample 4) don't use loops but use…
Comment: ABySS genome assembler by npavliukovec • 0
Hello, yes, I tried it, but I have to do my home work on university's remote computer, unfortunatelly I go an error, when I try to use abys…
Comment: desgin a primer for CDS by yuxiang • 0
how can you know the primer is not bind to other gene site? how can you desgin an experiment? I use the FISH to identify the gene, how abo…
Comment: desgin a primer for CDS by yuxiang • 0
sorry for my late reply, I am a student, my profossor ask me to dsgin a primer for the specific cDNA, I have solved now, thanks for your re…
Comment: vg: Mapping fewer reads to a genome graph than a linear reference by samuel.a.odonnell ▴ 470
In this case filtering for quality might help correct for this overattributing feature?
Comment: ABySS genome assembler by GenoMax 129k
Did you see this guidance from ABySS manual: https://github.com/bcgsc/abyss#optimizing-the-parameters-k-and-kc
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