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News: course - Advanced Python programming
Programming DeepLearning Python MachineLearning
1 day ago by carlopecoraro2 ★ 2.3k
3
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2
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267
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News: Participate in a NCBI/NIAID Virtual Codeathon: VCF Files for Population Genomics, Jul 31 - Aug 4, 2023
VCF SARS-CoV-2 NCBI Codeathon
2 days ago by PeterC_NCBI ▴ 260
0
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0
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90
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News: Virtual Genome Annotation Workshop
annotation genome workshop
3 days ago by mia.nahom ▴ 10
0
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0
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125
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News: Course - Longitudinal data analysis in R
Longitudinal-Data R Genomics
updated 5 days ago by 39k • written 5 days ago by ★ 2.3k
0
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1
reply
838
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News: Genomic bioinformatics service provider
next-gen-sequencing genome RNA-Seq ChIP-Seq
updated 2 days ago by 39k • written 4.5 years ago by • 0
4
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0
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1.0k
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News: Workshop for genomic data visualization and interpretation
R RNA-Seq ggplot2 genomics
updated 1 day ago by 39k • written 4.4 years ago by 19k
0
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0
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721
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News: Phylogenomics course in Berlin
SNP next-gen
updated 1 day ago by 39k • written 4.2 years ago by ★ 2.3k
0
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0
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570
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News: Join a private beta of new RNA-seq data analysis app
beta-testing RNA-Seq
updated 1 day ago by 39k • written 4.2 years ago by • 0
0
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0
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895
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News: Course on Molecular Phylogeny in Poland (15-18 July 2019)
Phylogeny R Barcoding Molecular-Ecology
updated 1 day ago by 39k • written 4.2 years ago by ★ 2.3k
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0
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1.0k
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News: Training in Molecular Modeling and Molecular Dynamics @NIH,May 21-24,2019
dynamics training biology RNA-Seq modeling
updated 1 day ago by 39k • written 4.2 years ago by ▴ 130
2
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0
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833
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News: Speciation Genomics course in Canada this September
snp R genome
updated 1 day ago by 39k • written 4.2 years ago by ★ 2.3k
2
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7
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1.4k
views
News: Beyond pest control: What can we learn from parasites?
docking heme parasitism in-silico
updated 1 day ago by 39k • written 4.2 years ago by 52k
0
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0
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729
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News: OmicsLogic Online Bioinformatics Program (March 2019) has started
genome RNA-Seq next-gen
updated 1 day ago by 39k • written 4.2 years ago by ▴ 340
1
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775
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News: 7th Annual Mendelian Data Analysis Workshop - Learn bioinformatic tools for analysis of exome and genome sequence data for rare diseases.
sequence genome next-gen analysis
updated 1 day ago by 39k • written 4.2 years ago by ▴ 10
1
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0
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646
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News: Gen3 DCF Services Webinar - Authentication, Authorization and Indexing
Gen3 Webinar
updated 1 day ago by 39k • written 4.2 years ago by ▴ 10
0
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0
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928
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News: Genomic Data Visualization course
R visualization Bioconductor
updated 1 day ago by 39k • written 4.2 years ago by ★ 2.3k
1
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0
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1.1k
views
News: Bioinformatic Analysis of Next Generation Sequencing Data @NIH
training RNA-Seq next-gen
updated 1 day ago by 39k • written 4.2 years ago by ▴ 130
0
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0
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725
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News: BSB Forum (Bioinformatics & Systems Biology Collaborative Projects)
Systems-Biology
updated 1 day ago by 39k • written 4.2 years ago by ▴ 20
0
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0
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636
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News: Programming in R
R Programming
updated 1 day ago by 39k • written 4.2 years ago by ★ 2.3k
6
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0
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2.1k
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News: Bioinformatics internships with Google Summer of Code 2019
intern Ensembl GSOC
updated 1 day ago by 39k • written 4.2 years ago by 23k
1
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0
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632
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News: Check out precision FDA's Featured Expert Blog from Dr. Charles Eaton
biomarker Dupytrens genetic crowd-sourcing
updated 1 day ago by 39k • written 4.2 years ago by ▴ 60
2
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0
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838
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News: GWAS course in Canada
GWAS
updated 1 day ago by 39k • written 4.2 years ago by ★ 2.3k
0
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0
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551
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News: Interested in Genomic Data Visualization?
R RNA-Seq next-gen
updated 1 day ago by 39k • written 4.2 years ago by ★ 2.3k
3
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1
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945
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News: Results are now available for the precisionFDA CDRH Biothreat Challenge!
NGS metagenomics FDA biothreat
updated 1 day ago by 39k • written 4.3 years ago by ▴ 60
0
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0
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836
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News: Applied Statistics and Bioinformatics with R and Bioconductor
R next-gen Bioconductor
updated 1 day ago by 39k • written 4.3 years ago by ★ 2.3k
0
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0
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737
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News: Programming for Biomedical Researchers @NIH, USA, April 23-26,2019
researchers biomedical
updated 1 day ago by 39k • written 4.3 years ago by ▴ 130
0
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0
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816
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News: 16S Microbial Metabarcoding Workshop. Last 4 spots available
Metabarcoding
updated 1 day ago by 39k • written 4.3 years ago by ★ 2.3k
2
votes
1
reply
751
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News: Gene set enrichment and pathway analysis in HT data
next-gen-sequencing RNA-Seq
updated 1 day ago by 39k • written 4.3 years ago by ★ 2.3k
0
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0
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1.4k
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News: 16S/ ITS Metabarcoding course using QIIME2 platform
Metabarcoding
updated 1 day ago by 39k • written 4.3 years ago by ★ 2.3k
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0
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1.5k
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News: Integrative Genomic Viewer (IGV) works with Amazon S3
amazon igv
updated 1 day ago by 39k • written 4.3 years ago by ▴ 610
3
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1
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806
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News: Results are now available for the precisionFDA NCI-CPTAC Multi-omics Enabled Sample Mislabeling Correction Challenge!
precisionFDA NCI challenge algorithm multi-omics
updated 1 day ago by 39k • written 4.3 years ago by ▴ 60
1
vote
1
reply
845
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News: Conference news: Final list of speakers for DataTech19, Scotland's data science conference
python data-science R hpc
updated 1 day ago by 39k • written 4.3 years ago by ▴ 20
1
vote
2
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886
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News: Sage Bionetworks is seeking researchers and data scientists to participate in software user research!
research software
updated 1 day ago by 39k • written 4.3 years ago by ▴ 30
1
vote
0
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860
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News: Genomic Data Visualization using R
R
updated 1 day ago by 39k • written 4.3 years ago by ★ 2.3k
0
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0
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791
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News: Introduction to Bayesian Statistics using Stan
statistics
updated 1 day ago by 39k • written 4.3 years ago by ★ 2.3k
1
vote
0
replies
643
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News: Naxatra: Advance program on RNAseq and bioinformatics
NGS hands-on-workshop RNA-Seq
updated 1 day ago by 39k • written 4.3 years ago by ★ 1.1k
6
votes
2
replies
898
views
News: Temporarily reduced functionality of Ensembl and Ensembl Genomes
Ensembl
updated 1 day ago by 39k • written 4.3 years ago by ★ 2.2k
1
vote
0
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607
views
News: SNAKEMAKE course in Berlin. Last places available
Python
updated 1 day ago by 39k • written 4.3 years ago by ★ 2.3k
0
votes
0
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605
views
News: New Course: Advanced R Programming in Berlin
R Programming
updated 1 day ago by 39k • written 4.3 years ago by ★ 2.3k
0
votes
0
replies
982
views
News: Training in Computational Drug Design and Discovery @NIH,USA, April 9-12,2019
biomedical drug-design training genomics RNA-Seq
updated 1 day ago by 39k • written 4.3 years ago by ▴ 130
0
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0
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577
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News: NATIONAL LEVEL HANDS ON WORKSHOP ON CRISPR-Cas9
CRISPR-Cas9 sequence next-gen
updated 1 day ago by 39k • written 4.3 years ago by • 0
0
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0
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1.2k
views
News: New bioinformatics courses at Edinburgh Genomics
Training R Linux RNA-Seq Workshop
updated 1 day ago by 39k • written 4.3 years ago by ▴ 40
0
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0
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1.2k
views
News: Metabarcoding Workshop. 4-8 March
metabarcoding next-gen
updated 1 day ago by 39k • written 4.3 years ago by ★ 2.3k
0
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0
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825
views
News: Phylogenomics course in Berlin. 20-24 May
RADseq phylogenomics
updated 1 day ago by 39k • written 4.3 years ago by ★ 2.3k
2
votes
0
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2.6k
views
News: 2nd Edition of the Biostar Handbook. New online course starts now.
biostar-handbook
updated 1 day ago by 39k • written 4.3 years ago by 98k
0
votes
0
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743
views
News: Course: Metagenomics and Barcoding in Greece, April 1-5, Transmitting Science
R next-gen
updated 1 day ago by 39k • written 4.3 years ago by • 0
0
votes
0
replies
993
views
News: Training in Statistical Analysis using R @NIH, March 20-22,2019
RStudio Statistical-Analysis training
updated 1 day ago by 39k • written 4.4 years ago by ▴ 130
10
votes
4
replies
1.5k
views
News: 3rd Berlin Summer School in NGS Data Analysis (2 seats just became available)
NGS RNA-Seq DNA-Seq
updated 1 day ago by 39k • written 4.4 years ago by 9.9k
0
votes
0
replies
735
views
News: SNAKEMAKE course in Berlin. Last 3 places
Pipeline Python
updated 1 day ago by 39k • written 4.4 years ago by ★ 2.3k
1
vote
0
replies
838
views
News: NCBI Webinar: New Variation Services for Normalizing, Remapping, and Annotating Variants
Variation dbsnp API SPDI Clinvar
updated 1 day ago by 39k • written 4.4 years ago by ▴ 70
232 results • Page 1 of 5
Recent Votes
RNAseq expression data log2 transformed has negative values.
Samtools: "Too Many Open Files"
Filtering bad quality probes in illumina microarray data
gene filtering for agilent microarray using Limma
A: Identification Of Significant Differences Between Phylogentic Trees Using Distan
A: How to filter vcf file on minimum genotype depth and quality for each sample
C: How to filter vcf file on minimum genotype depth and quality for each sample
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Popular Question to Sam ▴ 150
Supporter to arsala521 ▴ 10
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Popular Question to rbaranikumar • 0
Recent Replies
Comment: SyntaxError (Perhaps you forgot a comma?) in snakefile when running FastQC. by Dhatri Badri • 0
that didn't work either
Answer: Why are some WES VCFs larger than others? by Vincent Laufer ★ 2.8k
Hi @kermit and prash (and others)! Nice discussion. I wanted to offer some **biological rationales** in addition to the technical reasons …
Answer: SyntaxError (Perhaps you forgot a comma?) in snakefile when running FastQC. by WouterDeCoster 47k
There is no `:` after `rule fastqc`
Comment: SyntaxError (Perhaps you forgot a comma?) in snakefile when running FastQC. by Dhatri Badri • 0
sorry that was a typo while i was copying my code! I still get the same error
Comment: too many zeros in 16S rRNA amplicon sequencing data by andres.firrincieli 3.3k
You have too many ASV (40k) and I think this is a problem related to the denoising (DADA2) of NovaSeq 6000 sequencing data. Maybe this post…
Answer: SyntaxError (Perhaps you forgot a comma?) in snakefile when running FastQC. by Pierre Lindenbaum 154k
> fastq.gz". what is the dot after `fastq.gz" ` ?
Comment: DownsampleSam by Pierre Lindenbaum 154k
1) I think this is just a warning 2) there must be another error displayed 3) look at samtools view --subsample 4) don't use loops but use…
Comment: ABySS genome assembler by npavliukovec • 0
Hello, yes, I tried it, but I have to do my home work on university's remote computer, unfortunatelly I go an error, when I try to use abys…
Comment: desgin a primer for CDS by yuxiang • 0
how can you know the primer is not bind to other gene site? how can you desgin an experiment? I use the FISH to identify the gene, how abo…
Comment: desgin a primer for CDS by yuxiang • 0
sorry for my late reply, I am a student, my profossor ask me to dsgin a primer for the specific cDNA, I have solved now, thanks for your re…
Comment: vg: Mapping fewer reads to a genome graph than a linear reference by samuel.a.odonnell ▴ 470
In this case filtering for quality might help correct for this overattributing feature?
Comment: ABySS genome assembler by GenoMax 129k
Did you see this guidance from ABySS manual: https://github.com/bcgsc/abyss#optimizing-the-parameters-k-and-kc
Comment: Single cell chemistry by GenoMax 129k
> I did it with cellRanger count and it went fine with good results It is not clear if you are referring to some other samples that worked…
Comment: How to process (seems) Agilent microarrry data? by survive • 0
@kevinblighe Hi, wondering if this is within-array normalization or between-array normalization? if it is within-array normalization, how c…
Comment: How to filter vcf file on minimum genotype depth and quality for each sample by Kermit ▴ 80
Don't forget to pipe the stdout into a new file. Plus >=. `bcftools view --include 'MIN(FMT/DP)>=10 & MIN(FMT/GQ)>=15' my.vcf > my_outpu…
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