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News: ISMB-affiliated virtual tutorial on Neo4j/Cypher for life sciences
neo4j cypher graph knowledge
1 hour ago by Stephen • 0
729
votes
161
replies
108k
views
100 follow
News: The Biostar Handbook. A bioinformatics e-book for beginners.
training handbook
updated 9 days ago by 1.6k • written 6.3 years ago by 97k
0
votes
0
replies
30
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News: Announcing workshop on Declarative Programming in Biology and Medicine (Seattle, Sept. 2023)
medicine declmed declarative icfp precision
3 hours ago by Stephen • 0
0
votes
0
replies
87
views
News: Course live online Introduction to Bayesian Analyses using R, May 8th-12th, 2023
bayesian RProject course online
1 day ago by Sole • 0
0
votes
0
replies
96
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News: course - Reproducibility in Bioinformatics
Docker Reproducibility
updated 14 minutes ago by 38k • written 2 days ago by ★ 2.3k
0
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2
replies
293
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News: Course - Metagenomics, metatranscriptomics, and multi'omics for microbial community Studies
Metagenomics Metatranscriptomics Multiomics
updated 6 days ago by 38k • written 6 days ago by ★ 2.3k
10
votes
4
replies
577
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News: RNA-Seq Data Analysis Workshop - Join us in Berlin, Germany from March 27-30, 2023!
NGS transcriptomics workshop
updated 7 days ago by ▴ 30 • written 6 weeks ago by 9.9k
1
vote
0
replies
143
views
News: Summer School in Bioinformatics
Genomics Docker RNA-seq
updated 7 days ago by 38k • written 7 days ago by ★ 2.3k
1
vote
1
reply
235
views
News: Sign-ups for the St. Jude KIDS23 BioHackathon (May 3-5th) open through March 15th!
stjude hackathon
9 days ago by jared.andrews07 ★ 14k
1
vote
0
replies
157
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News: Course - BIOINFORMATIC ANALYSIS OF TRANSPOSABLE ELEMENTS
Transposable-Elements TE Genome-Assembly
updated 7 days ago by 38k • written 10 days ago by ★ 2.3k
0
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0
replies
113
views
News: Environmental Metagenomics course
Environmental-Metagenomics
updated 15 days ago by 38k • written 15 days ago by ★ 2.3k
0
votes
0
replies
134
views
News: Course - GENERALIZED LINEAR MODELS in R
GLMs R GeneralisedLinearModels
16 days ago by carlopecoraro2 ★ 2.3k
1
vote
0
replies
185
views
News: Virtual Single Cell RNA-seq Workshop
single genomics cell expression rna-seq workshop gene
20 days ago by mia.nahom ▴ 10
1
vote
0
replies
192
views
News: Advanced Bayesian statistics in R course
Statistics RegressionModeling Bayesian R
21 days ago by carlopecoraro2 ★ 2.3k
0
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0
replies
120
views
News: Course - INTRODUCTION TO THE ANALYSIS OF LONGITUDINAL DATA WITH R
Genomics LongitudinalData R
23 days ago by carlopecoraro2 ★ 2.3k
1
vote
0
replies
195
views
News: The GDC Legacy Archive is retiring soon.
genomic-data-commons tcga gdc
updated 24 days ago by 38k • written 24 days ago by ▴ 750
0
votes
0
replies
194
views
News: course MULTIVARIATE DATA ANALYSIS WITH R AND VEGAN
Vegan MULTIVARIATEDATAANALYSIS Statistics R
27 days ago by carlopecoraro2 ★ 2.3k
0
votes
0
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155
views
News: course - single-cell RNAseq with R/Bioconductor
Bioconductor single-cell genomics RNAseq
updated 16 days ago by 38k • written 28 days ago by ★ 2.3k
0
votes
0
replies
272
views
News: Course - Analysis of PROKARYOTIC PANGENOMES
Genomics Pangenomes
updated 4 weeks ago by 38k • written 4 weeks ago by ★ 2.3k
5
votes
3
replies
370
views
News: March 13-16: Virtual Nextflow and nf-core training event in 5 languages
nf-core pipeline Nextflow
updated 3 days ago by ▴ 230 • written 4 weeks ago by 3.4k
0
votes
1
reply
145
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News: Courses in March. -still a few seats available
Bioconductor Genomics R
updated 5 weeks ago by 38k • written 5 weeks ago by ★ 2.3k
0
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0
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162
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News: course - Next steps in applied Bayesian regression modeling
Statistics RegressionModeling Bayesian R
5 weeks ago by carlopecoraro2 ★ 2.3k
0
votes
0
replies
203
views
News: Introduction to GWAS course in June
GWAS R
updated 16 days ago by 38k • written 5 weeks ago by ★ 2.3k
0
votes
0
replies
206
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News: Introduction to GWAS course (6th edition) - June, 5th-8th
GWAS R
updated 6 weeks ago by 38k • written 6 weeks ago by ★ 2.3k
0
votes
0
replies
138
views
News: Course - Version Control for Researchers
VersionControl GIT Github
6 weeks ago by carlopecoraro2 ★ 2.3k
0
votes
0
replies
270
views
News: Course - INTRODUCTION TO PYTHON PROGRAMMING FOR BIOLOGISTS
Programming Python
updated 6 weeks ago by 38k • written 6 weeks ago by ★ 2.3k
0
votes
0
replies
175
views
News: Eukaryotic Metabarcoding course
eDNA Metabarcoding
updated 7 weeks ago by 38k • written 7 weeks ago by ★ 2.3k
0
votes
3
replies
336
views
News: NCBI update complete. Aspera users please update your client.
NCBI Submissions GenBank
6 weeks ago by PeterC_NCBI ▴ 200
0
votes
0
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163
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News: Course - Mass Spectrometry and Proteomics in R/Bioconductor
Bioconductor MassSpectrometry R Proteomics
7 weeks ago by carlopecoraro2 ★ 2.3k
0
votes
0
replies
311
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News: Course - Machine Learning in R (for omics data)
Genomics omics MachineLearning R
7 weeks ago by carlopecoraro2 ★ 2.3k
2
votes
0
replies
206
views
News: Course - Reproducibility in Bioinformatics
Reproducibility
updated 7 weeks ago by 38k • written 7 weeks ago by ★ 2.3k
0
votes
0
replies
158
views
News: course - Multivariate data analysis with R and vegan
Statistics MultivariateAnalysis R vegan
8 weeks ago by carlopecoraro2 ★ 2.3k
0
votes
2
replies
660
views
News: Online Course - A Practical Introduction to NGS Data Analysis (February 01-03, 2023)
NGS DNAseq variant-calling RNAseq
8 weeks ago by David Langenberger 9.9k
0
votes
0
replies
231
views
News: Bioinformatics courses in February
Genomics BioinformaticsTraining
8 weeks ago by carlopecoraro2 ★ 2.3k
0
votes
0
replies
526
views
News: Reminder: NCBI Aspera access, update Aspera Connect by Feb 1, 2023
Aspera NCBI SRA GenBank
8 weeks ago by PeterC_NCBI ▴ 200
1
vote
2
replies
365
views
News: Course: Network Analysis in R
NetworkAnalyis R
8 weeks ago by carlopecoraro2 ★ 2.3k
0
votes
0
replies
220
views
News: de novo RNA-seq Analysis Workshop
virtual workshop rna transcriptome
9 weeks ago by mia.nahom ▴ 10
0
votes
0
replies
257
views
News: Genomic Prediction course
Selective-Breeding Genomic-Prediction
updated 7 weeks ago by 38k • written 9 weeks ago by ★ 2.3k
1
vote
0
replies
335
views
News: course: Meta-analysis in R
Statistics MetaAnalysis R
9 weeks ago by carlopecoraro2 ★ 2.3k
0
votes
0
replies
302
views
News: GSEA in R/Bioconductor course
Bioconductor R GSEA GeneSetEnrichmentAnalysis
9 weeks ago by carlopecoraro2 ★ 2.3k
0
votes
0
replies
545
views
News: For NCBI Aspera access, update Aspera Connect by Feb 1, 2023
Aspera NCBI GenBank
9 weeks ago by PeterC_NCBI ▴ 200
0
votes
0
replies
248
views
News: Metabarcoding in Microbial Ecology
Metabarcoding Qiime2 16S MicrobialEcology R
9 weeks ago by carlopecoraro2 ★ 2.3k
0
votes
0
replies
240
views
News: Metagenomics tools recommeder system
NGS Metagenomics Recommender-system
updated 9 weeks ago by 38k • written 9 weeks ago by • 0
0
votes
0
replies
330
views
News: Hands-On NGS Data Analysis Workshops 2023
NGS Workshop RNA-Seq DNA-Seq
10 weeks ago by David Langenberger 9.9k
1
vote
5
replies
665
views
News: Cancer Genomics course - 2 seats left
Genomics Cancer-Genomics R
updated 7 weeks ago by 38k • written 10 weeks ago by ★ 2.3k
0
votes
0
replies
230
views
News: Course on Generalised Additive Models In R
Statistics GAMs R
10 weeks ago by carlopecoraro2 ★ 2.3k
0
votes
1
reply
400
views
News: Sex Chromosome Evolution course
Genomics Sex-Chromosome-Evolution
updated 7 weeks ago by 38k • written 10 weeks ago by ★ 2.3k
1
vote
2
replies
550
views
News: New chat server (Discord) for bioinformatics
community
10 weeks ago by Samuel Lampa ★ 1.3k
0
votes
0
replies
283
views
News: Online course - Genome Assembly and Annotation
Long-reads Genome-Annotation Biodiversity Genome-Assembly
updated 7 weeks ago by 38k • written 10 weeks ago by ★ 2.3k
1
vote
3
replies
485
views
News: NCBI BLAST ClusteredNR database now available for blastx and PSI-BLAST searches
PSI-BLAST blastx BLAST NCBI ClusteredNR
10 weeks ago by PeterC_NCBI ▴ 200
458 results • Page 1 of 10
Recent Votes
Comment: TSS of protein coding genes
Comment: How to find promoter sequence of a gene?
Answer: BCFtools for somatic vs. germline variant calling
Answer: How to generate GFF/GTF file from cDNA transcipts FASTA file?
Comment: bioinformatics problems solved by graphs data structure
Comment: bioinformatics problems solved by graphs data structure
Answer: How to analize multiple letters codes in COG IDs?
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Popular Question to abdelmalek.benmeziane • 0
Recent Replies
Comment: how to get to a VCF from bam files by Ram 38k
Read my script - change your bcftools to output VCF, not BCF. File size (as long as it's >0) is not an indicator of anything significant. …
Comment: how to get to a VCF from bam files by Human • 0
Thanks a lot GenoMax and Ram! After a short look into that manual https://samtools.github.io/bcftools/howtos/variant-calling.html I went w…
Answer: BCFtools for somatic vs. germline variant calling by Ram 38k
bcftools does not differentiate. It calls variant loci. I don't think there's a single variant caller that calls both germline and somatic …
Comment: What means this Error when running a script in python?? by Ram 38k
Please format your code properly the next time. I've seen people use wrong formatting options to a reasonable extent, but your formatting w…
Comment: Gaia CNV error TCGA data by Ram 38k
1. Don't use people's names as tags. 2. Format your post properly. I've done what I can for now. 3. Add a link to "the tutorial from @kevin…
Comment: bioinformatics problems solved by graphs data structure by lieven.sterck 14k
et mon français est assez bien pour comprendre ce que tu as écrit la ;-)
Comment: How to analize multiple letters codes in COG IDs? by Constanza • 0
Thanks for answering so fast, it was very helpful. I shouldn't pay much attention to if COGs are separated by a comma or not then. As long…
Comment: bioinformatics problems solved by graphs data structure by lieven.sterck 14k
well, because this is not you guys' private forum, there are other people participating (not native french speaking) , just to give a reaso…
Answer: How to get gene from PSIBLAST resuts by lieven.sterck 14k
what you likely will need to do: 1. get the ID of the protein that you are interested in (out of result from PSIBLAST) 2. lookup that ID…
Answer: How to analize multiple letters codes in COG IDs? by Mensur Dlakic ★ 23k
The meaning of individual letters is described in a well-known COG functional code: https://ecoliwiki.org/colipedia/index.php/Clusters_o…
Comment: How to find promoter sequence of a gene? by sunyeping ▴ 40
The organism is mice.
Answer: How to generate GFF/GTF file from cDNA transcipts FASTA file? by Pierre Lindenbaum 153k
BLAT your cDNAs to the reference. This should be a PSL file that can be converted to a psl->gff3 converter (e.g: https://github.com/gperte…
Comment: RNAseq: same reads + more complete scaffold = fewer DEGs? by Darked89 4.2k
You may try to check what happened with DEGs obtained using the 300 fragments assembly by getting the sequences of these genes and comparin…
Comment: ExomeDepth installation error by Medha • 0
Thanks, that did work. Also in next steps, there are some arguments like bam.files, I was wondering do we require to have multiple bam fil…
Comment: ExomeDepth installation error by jared.andrews07 ★ 14k
No idea, I don't use databricks. I'd read the docs, find a local expert to help you out, or contact their support, likely in that order.
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