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1,000 results • Page 4 of 20
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News: Genome Assembly and Annotation course
Annotation Nanopore GenomeAssembly Pacbio
10 months ago by carlopecoraro2 ★ 2.3k
3
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1.1k
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News: Changes to the default NCBI BLAST nucleotide database (nt). Learn more and provide feedback!
NCBI Databases BLAST
10 months ago by PeterC_NCBI ▴ 330
0
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0
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315
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News: Nextflow online training
Nextflow Workflow Reproducibility
updated 9 months ago by 40k • written 10 months ago by ★ 2.3k
0
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2
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1.1k
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News: :: FINAL CALL :: Next-Generation Sequencing Data Analysis: A Practical Introduction (December 12-14, 2022 in Munich, Germany)
rnaseq dnaseq sequencing ngs workshop
10 months ago by David Langenberger 10k
0
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0
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370
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News: The Association for Single Cell Analysis (ASCA)
genomics singlecell metabolomics sequencing proteomics
10 months ago by dnsv.ev • 0
0
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0
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347
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News: Deep Learning in Population Genomics and Phylogeography
DeepLearning Phylogeography PopulationGenomics
10 months ago by carlopecoraro2 ★ 2.3k
0
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0
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351
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News: Metabarcoding in Microbial Ecology Workshop
Qiime2 R Metabarcoding Microbial-Ecology
10 months ago by carlopecoraro2 ★ 2.3k
1
vote
2
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501
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News: Gene Set Enrichment Analysis in R/Bioconductor
Gene-Set-Enrichment-Analysis R Cancer-Genomics GSEA
10 months ago by carlopecoraro2 ★ 2.3k
0
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0
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312
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News: Analysis of RNA sequencing data with R/Bioconductor course.
Bioconductor RNAseq R
10 months ago by carlopecoraro2 ★ 2.3k
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0
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464
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News: Winter School in Bioinformatics
course workshop
updated 9 months ago by 40k • written 10 months ago by ★ 2.3k
1
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0
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393
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News: Introduction to Nextflow
Nextflow
updated 9 months ago by 40k • written 10 months ago by ★ 2.3k
0
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2
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573
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News: Seascape Genomics in R
Genomics Seascape R
updated 9 months ago by 40k • written 11 months ago by ★ 2.3k
0
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0
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297
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News: Bioinformatics courses in November
Bioconductor Genomics R
updated 9 months ago by 40k • written 11 months ago by ★ 2.3k
0
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0
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682
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News: Flow cytometry analysis with R/Bioconductor course
Bioconductor R Cytometry Flow
11 months ago by carlopecoraro2 ★ 2.3k
0
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0
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304
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News: course: RNA-seq analyses in non-model organisms
differential Bioconductor RNAseq expression non-model organisms analysis R
11 months ago by carlopecoraro2 ★ 2.3k
0
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0
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323
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News: course - Developing R/Bioconductor packages for genomics
developing package Bioconductor Genomics R
11 months ago by carlopecoraro2 ★ 2.3k
2
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0
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354
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News: Four NCBI workshops in October (BLAST, Primer-BLAST, Metagenome analysis, Structures in iCn3D)
metagenomics MagicBLAST BLAST NCBI Primer-BLAST
11 months ago by PeterC_NCBI ▴ 330
0
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0
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477
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News: course - Unix and shell scripting for bioinformatics
bash Shell-scripting Unix
updated 9 months ago by 40k • written 11 months ago by ★ 2.3k
0
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0
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351
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News: course: Data Visualization in Python
Visualisation Python Data
updated 11 months ago by 134k • written 11 months ago by ★ 2.3k
0
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0
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334
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News: Seascape Genomics in R course
Genomics R Seascape Population
11 months ago by carlopecoraro2 ★ 2.3k
0
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0
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415
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News: Cellosaurus API
line cell API
12 months ago by Amos Bairoch ▴ 110
0
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0
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346
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News: Cellosaurus release 43 is available
cellosaurus cell-line
updated 9 months ago by 40k • written 12 months ago by ▴ 110
0
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0
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295
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News: Genomics Webinar: Using Mastermind’s New ClinVar Integration to Accelerate Clinical Diagnoses
variant-interpretation genomics database webinar
updated 9 months ago by 40k • written 12 months ago by • 0
0
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0
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357
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News: The NCTR Indel Calling from Oncopanel Sequencing Data Challenge Winners have been announced!
FDA-challenge
updated 9 months ago by 40k • written 12 months ago by ▴ 10
0
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0
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359
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News: Sex Chromosome Evolution course
course Genomics
updated 9 months ago by 40k • written 12 months ago by ★ 2.3k
0
votes
0
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353
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News: Online training - Cancer Genomics in R
Cancer Genomics R
updated 9 months ago by 40k • written 13 months ago by ★ 2.3k
0
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0
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426
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News: Final Call! Tomorrow (7/8) is the Deadline for Phase 1 submissions of the NCTR Indel Calling from Oncopanel Sequencing Data Challenge!
oncopanel indel-calling
updated 9 months ago by 40k • written 14 months ago by ▴ 10
0
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3
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1.1k
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News: Less Than One Month Remaining until the Submission Deadline for Phase 1 of the NCTR Indel Calling from Oncopanel Sequencing Data Challenge!
oncopanel indel-calling
updated 9 months ago by 40k • written 15 months ago by ▴ 10
0
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0
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330
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News: Online course- Reproducibility in Bioinformatics - 11-13 July
Docker Reproducibility
updated 9 months ago by 40k • written 15 months ago by ★ 2.3k
0
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0
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360
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News: Online course - Metabarcoding in microbial Ecology
Qiime2 Metabarcoding Microbial-Ecology
updated 9 months ago by 40k • written 16 months ago by ★ 2.3k
3
votes
1
reply
490
views
News: Free web seminars related to small non-coding RNA bioinformatics
smallRNA microRNA
updated 9 months ago by 40k • written 16 months ago by ▴ 60
0
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0
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344
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News: Online course - Developing R/Bioconductor packages for genomics
Bioconductor R
updated 9 months ago by 40k • written 16 months ago by ★ 2.3k
1
vote
0
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485
views
News: Phase 1 of the NCTR Indel Calling from Oncopanel Sequencing Data Challenge is now live!
oncopanel indel-calling
updated 9 months ago by 40k • written 16 months ago by ▴ 10
0
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0
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947
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News: Pre-Register for the NCTR Indel Calling from Oncopanel Sequencing Data Challenge with FDA’s National Center for Toxicological Research (NCTR) and pre…
oncopanel indel-calling
updated 9 months ago by 40k • written 17 months ago by ▴ 10
0
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1
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2.2k
views
News: Nature Index: Novogene is teaming up with laboratories worldwide for life sciences and human health research
NGS Nature Sequencing
updated 9 months ago by 40k • written 18 months ago by ▴ 350
1
vote
0
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315
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News: Reproducibility in Bioinformatics Workshop
Reproducibility
updated 9 months ago by 40k • written 18 months ago by ★ 2.3k
0
votes
0
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335
views
News: Cellosaurus release 41 is available
knowledgebase biocuration cell-line
updated 7 months ago by 40k • written 18 months ago by ▴ 110
1
vote
0
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511
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News: :: LAST CALL :: Bioinformatics Pipeline Development with Nextflow (April 4-7, 2022)
NGS Pipeline-Development Nextflow
updated 9 months ago by 40k • written 18 months ago by 10k
0
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0
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465
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News: Cellosaurus release 40 is available
knowledgebase cell-line
updated 7 months ago by 40k • written 21 months ago by ▴ 110
0
votes
0
replies
365
views
News: Bioinformatics Analysis
Transcriptome genome data-analysis
updated 7 months ago by 40k • written 22 months ago by • 0
0
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0
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410
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News: Bioinformatics
metagenomics metatranscriptomics
updated 7 months ago by 40k • written 22 months ago by • 0
0
votes
0
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403
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News: UC Davis Bioinformatics Core Workshops
data-analysis
updated 7 months ago by 40k • written 22 months ago by • 0
0
votes
0
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530
views
News: Metagenomics and Metatranscriptomics Workshop!
metagenomics metatranscriptomics
updated 7 months ago by 40k • written 22 months ago by • 0
0
votes
0
replies
740
views
News: UC Davis Bioinformatics Core Workshops
Workshops UC-Davis
updated 7 months ago by 40k • written 22 months ago by • 0
1
vote
1
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559
views
News: QC for Next Generation Sequencing
NGS QC
updated 6 months ago by 40k • written 23 months ago by • 0
0
votes
0
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549
views
News: Cellosaurus release 39 is available
knowledgebase cell-line
updated 7 months ago by 40k • written 24 months ago by ▴ 110
0
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0
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649
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News: FINAL CALL :: Online Course - A Practical Introduction to NGS Data Analysis (July 14-16, 2021)
NGS workshop
updated 6 months ago by 40k • written 2.2 years ago by 10k
0
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0
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535
views
News: Cellosaurus release 38 is available
knowledgebase cell-line
updated 7 months ago by 40k • written 2.3 years ago by ▴ 110
0
votes
1
reply
1.1k
views
News: 5th Berlin Summer School in NGS Data Analysis 2021 (October 4-8)
DNA-Seq Workshop RNA-Seq NGS
updated 7 months ago by 40k • written 2.6 years ago by 10k
5
votes
0
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1.1k
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News: Bioinformatics Contest 2021
bioinfcontest contest bioinforussia
updated 7 months ago by 40k • written 2.4 years ago by ▴ 50
1,000 results • Page 4 of 20
Recent Votes
Answer: Identifying common DEGs among multiple datasets
Answer: Identifying common DEGs among multiple datasets
A: what do the headers of the rMATS output files mean?
A: what do the headers of the rMATS output files mean?
Answer: DESeq2 analysis using two featureCounts generated from different studies
Answer: DESeq2 analysis using two featureCounts generated from different studies
Answer: Assistance with Fungal Genome Annotation Using Maker and BLAST
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Popular Question to BioinfoBee • 0
Scholar to Pierre Lindenbaum 157k
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Recent Replies
Comment: ATAC-seq troubleshoot - Just Noise by ATpoint 76k
Yes, definitely lots of noise and few peaks for such an experiment. Which celltype is that, and which lab protocol did you use?
Comment: DESeq2 analysis using two featureCounts generated from different studies by abedkurdi10 ▴ 190
What do you mean by gene lists?
Comment: Find potential important genes from bulk-RNA seq experiment by Michael 53k
You can use e.g. the WGCNA package for network analysis. In your case multiple samples this might mean multiple patients or a time series o…
Comment: Assistance with Fungal Genome Annotation Using Maker and BLAST by Edoardo • 0
Thank you so much for your responses. @genomax , I've downloaded both of the databases you recommended. I attempted to combine them into …
Answer: Simulate short-read RNA-seq data from long-read RNA-seq data by Mensur Dlakic ★ 24k
I think you could try doing this, but it wouldn't be appropriate. You'd be bringing long-read errors, which I believe are higher than short…
Comment: Salmon index not progressing by camillab. ▴ 130
I opened tow terminals and one was the code to build a decoy-aware transcriptome and the other was building indexes (no decoy)
Comment: Adding a control sample to bulk RNA-seq by Chris ▴ 180
Thank you for the explanation! So just want to confirm one control with replicate is totally useless even can't use as a reference?
Answer: DESeq2 analysis using two featureCounts generated from different studies by swbarnes2 13k
Comparing samples between labs is a bad idea. Better to generate gene lists from one study from one lab, and gene lists from another study…
Comment: Adding a control sample to bulk RNA-seq by swbarnes2 13k
If a sample wasn't prepared along side your treated samples, it is a different batch. If you had treated and controls in each of two diffe…
Comment: kallisto normalized TPM values without bootstraps by ATpoint 76k
You don't need sleuth. Typically these deconvolutions, or most downstream analysis, is done on the gene- rather than the transcript-level w…
Comment: Salmon index not progressing by ATpoint 76k
If the top $CPU column shows some values in the hundreds then it is doing something (actually when it's > 0%). So based on the screenshot i…
Comment: Salmon index not progressing by camillab. ▴ 130
Thank you. Waiting it's not gonna hurt me, when should I stop hoping and give up is the question? do you know is there a way if I can see i…
Comment: Filtering VCF to divide with equal sizes by Ram 40k
A more efficient way would be to make a 2 column CSV file, one column with the count value and the other with the chr:start-end range, then…
Answer: Filtering VCF to divide with equal sizes by avelarbio46 ▴ 30
I divided my contigs using R, but it was more complex than the program Pierre Lindenbaum made (https://jvarkit.readthedocs.io/en/latest/Vcf…
Comment: Salmon index not progressing by ATpoint 76k
Just wait until it is finished. It's seems to be running. I just checked my logs and on our HPC with four cores such as process for a decoy…
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