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News: The Biostar Handbook. A bioinformatics e-book for beginners.
training handbook
updated 3 months ago by 2.7k • written 7.4 years ago by 100k
0
votes
0
replies
74
views
News: 8th Berlin Summer School in NGS Data Analysis - Apply Now
variantcalling DNAseq illumina RNAseq transcriptomics
20 hours ago by David Langenberger 11k
0
votes
0
replies
78
views
News: hands-on introduction to generalized linear models (GLMs) using R
Generalized-Linear-Models GLM R
updated 15 hours ago by 43k • written 1 day ago by ★ 2.5k
3
votes
0
replies
108
views
News: Interested in Spatial Omics?
Bioconductor Spatial-Omics Spatial-Transcriptomics
updated 1 day ago by 43k • written 1 day ago by ★ 2.5k
0
votes
0
replies
78
views
News: Online course: DNA methylation
Pacbio Nanopore DnaMethylation Evolution
3 days ago by carlopecoraro2 ★ 2.5k
0
votes
0
replies
127
views
News: upcoming online statistical courses
Statistics R Data-Analysis
updated 3 days ago by 43k • written 4 days ago by ★ 2.5k
0
votes
0
replies
186
views
News: Online course: Meta-analysis in R
Meta-Analysis Statistics R
updated 6 days ago by 43k • written 6 days ago by ★ 2.5k
0
votes
0
replies
171
views
News: Course - Agent-Based Modelling Using NetLogo - University of Lodz, Poland
Netlogo Individual-Based-Models Agent-Based-Models
updated 6 days ago by 43k • written 6 days ago by ★ 2.5k
0
votes
0
replies
171
views
News: Final Call - Bioinformatics Pipeline Development with Nextflow (May 27-29, 2024)
workshop RNA-seq nextflow DNA-seq
updated 8 days ago by 43k • written 8 days ago by 11k
0
votes
0
replies
141
views
News: Deadline Approaching: PETs for Public Health Challenge
privacy public-health-challenge
updated 9 days ago by 43k • written 9 days ago by ▴ 380
0
votes
0
replies
176
views
News: Online course: Network Analysis in R
NetworkAnalyis R
11 days ago by carlopecoraro2 ★ 2.5k
0
votes
0
replies
181
views
News: Online course: Meta-analysis in R
Meta-Analysis R
updated 13 days ago by 43k • written 13 days ago by ★ 2.5k
1
vote
0
replies
127
views
News: Online Live Course: Introduction to Machine Learning in R
Rstats TScourses Rlang Rproject
updated 13 days ago by 43k • written 13 days ago by ▴ 70
2
votes
0
replies
121
views
News: Online Course Generalised Additive Mixed Models (GAMM): modelling space-time correlation structures
GAMM Rlang Rstats Rproject
updated 13 days ago by 43k • written 13 days ago by ▴ 70
2
votes
0
replies
120
views
News: Online Course Introduction to Network Analysis and Modelling
Python Network-Analysis
updated 13 days ago by 43k • written 13 days ago by ▴ 70
2
votes
0
replies
112
views
News: Course Functional Programming with R
Rstats TScourses Rproject KeepLearning Rlang
14 days ago by Transmitting Science communication ▴ 70
12
votes
2
replies
440
views
News: 8th Berlin Summer School in NGS Data Analysis (June 10-14, 2024) - already half booked
Workshop RNA-Seq DNA-Seq Illumina
15 days ago by David Langenberger 11k
2
votes
0
replies
115
views
News: Online course: Genome Annotation
Genome-Assembly RNA-seq Genome-Annotation
updated 15 days ago by 43k • written 15 days ago by ★ 2.5k
0
votes
0
replies
117
views
News: Online course: Multivariate Data Analysis with R and vegan
Multivariate-Statistics vegan R
updated 16 days ago by 43k • written 17 days ago by ★ 2.5k
1
vote
0
replies
172
views
News: Landscape Genomics course in Switzerland
LFMM Landscape-Genomics Sambada R Local-Adaptation
updated 16 days ago by 43k • written 19 days ago by ★ 2.5k
8
votes
2
replies
768
views
News: FINAL CALL - Single-Cell RNA-Seq Data Analysis: A Practical Introduction (May 6-8, 2024 in Berlin)
single-cell sequencing
20 days ago by David Langenberger 11k
0
votes
0
replies
141
views
News: Online course: Food Traceability Using Genomic Tools
Nanopore Genomic-Tools Illumina Food-Traceability
updated 21 days ago by 43k • written 21 days ago by ★ 2.5k
0
votes
0
replies
143
views
News: Online course: Eukaryotic Metabarcoding
Metabarcoding Biodiversity R eDNA
23 days ago by carlopecoraro2 ★ 2.5k
3
votes
2
replies
554
views
News: Announcement: Research Topic "Mechanistic, Machine Learning and Hybrid Models of the 'Other' Endocrine Regulatory Systems in Health and Disease", Vol…
mathematical-modelling endocrinology ML systems-biology machine-learning
26 days ago by Johannes W. Dietrich • 0
0
votes
0
replies
198
views
News: Online course: Reproducibility in Bioinformatics
Singularity Version-Control Docker Containers
updated 27 days ago by 43k • written 27 days ago by ★ 2.5k
0
votes
0
replies
162
views
News: Online course: Analysis of Prokaryotic Pangenomes (Last call)
Prokaryotic Bacterial-Genomics Pangenomics
updated 27 days ago by 43k • written 27 days ago by ★ 2.5k
0
votes
0
replies
162
views
News: Online course: Introduction to GWAS
GWAS Imputation StatisticalPower
4 weeks ago by carlopecoraro2 ★ 2.5k
0
votes
0
replies
160
views
News: Online course: Adaptation Genomics
StructuralVariants Selection AdaptationGenomics PopulationStructure
5 weeks ago by carlopecoraro2 ★ 2.5k
0
votes
0
replies
150
views
News: Online course: Analysis of Prokaryotic Pangenomes
BacterialGenomics Pangenomics
5 weeks ago by carlopecoraro2 ★ 2.5k
0
votes
0
replies
229
views
News: Online course on Genome Assembly and Annotation (1 seat left)
Galaxy GenomeAssembly GenomeAnnotation
5 weeks ago by carlopecoraro2 ★ 2.5k
1
vote
0
replies
167
views
News: NCBI's ClinVar now accepting somatic variation data
variation NCBI somatic-variants ClinVar
5 weeks ago by PeterC_NCBI ▴ 410
1
vote
1
reply
271
views
News: EMBL Course Hands-on course for sample preparation and data analysis in proteomics
EMBLProteomics
updated 6 weeks ago by • 0 • written 11 weeks ago by ▴ 10
1
vote
0
replies
191
views
News: Learn how to create robust bioinformatics pipelines for reproducible and comparable NGS analyses
nextflow pipeline workshop
6 weeks ago by David Langenberger 11k
0
votes
0
replies
151
views
News: Online course: Genome Assembly and Annotation - 3 seats left
Genome-Assembly Galaxy Genome-Annotation
updated 6 weeks ago by 43k • written 6 weeks ago by ★ 2.5k
0
votes
0
replies
149
views
News: Call for abstract: Quest for Orthologs meeting in Montreal
conference phylogeny comparativegenomics orthology evolution
6 weeks ago by sina.majidian ▴ 20
1
vote
0
replies
153
views
News: shournal: A Tool for Bioinformaticians to Boost Research Reproducibility
reproducability terminal bash
7 weeks ago by David Langenberger 11k
1
vote
1
reply
191
views
News: Integrated Genome Browser (IGB) Office Hours
Integrated-Genome-Browser IGB
updated 7 weeks ago by 43k • written 7 weeks ago by • 0
0
votes
0
replies
183
views
News: Online course: Network Analysis in Systems Biology with R/Bioconductor
R RNA-seq Network-Analysis Bioconductor Systems-Biology
updated 7 weeks ago by 43k • written 7 weeks ago by ★ 2.5k
0
votes
0
replies
215
views
News: The 2024 Canadian Bioinformatics Workshops are here!
CBW workshop training
7 weeks ago by bioinformatics.ca • 0
0
votes
0
replies
171
views
News: Live online course Data Manipulation with R Tidyverse, 3 and 5 of April
R manipulation tidyverse data
8 weeks ago by Sole • 0
0
votes
0
replies
191
views
News: Online course: Reproducibility in Bioinformatics
Docker Singularity WorkflowManagementSystems Reproducibility
8 weeks ago by carlopecoraro2 ★ 2.5k
0
votes
0
replies
244
views
News: Online course: Genome Assembly Using Oxford Nanopore Sequencing - 4 seats remaining
GenomeAssembly Nanopore longreads
8 weeks ago by carlopecoraro2 ★ 2.5k
0
votes
0
replies
229
views
News: Webinar about scRNA-seq cell type prediction
scRNAseq
updated 8 weeks ago by 141k • written 8 weeks ago by • 0
0
votes
0
replies
236
views
News: Online course: Spatial Omics in R/Bioconductor
R Spatial-Omics Bioconductor tidyverse transcriptomics
updated 9 weeks ago by 43k • written 9 weeks ago by ★ 2.5k
0
votes
0
replies
201
views
News: Online course: Model-Based Demographic Inference from Population Genomics
Demographic-Inference Population-Genomics Demographic-Models
updated 9 weeks ago by 43k • written 9 weeks ago by ★ 2.5k
0
votes
0
replies
176
views
News: Online course: R/Bioconductor for Mass Spectrometry and Proteomics
R Proteomics Bioconductor Mass-Spectrometry
updated 10 weeks ago by 43k • written 10 weeks ago by ★ 2.5k
0
votes
0
replies
186
views
News: Virtual Workshops with the UConn Computational Biology Core
Workshop genomics
updated 10 weeks ago by 141k • written 10 weeks ago by ▴ 10
0
votes
0
replies
175
views
News: NGS Data Analysis Courses for Absolute Beginners
NGS DNAseq RNAseq singlecellsequencing DataAnalysis
10 weeks ago by David Langenberger 11k
0
votes
0
replies
192
views
News: Online course: Genome Assembly and Annotation
Annotation Genome-Assembly Nanopore Pacbio
updated 10 weeks ago by 43k • written 10 weeks ago by ★ 2.5k
0
votes
0
replies
172
views
News: Online course: Computation Tumor Evolution
R Cancer-Genomics Tumor-Evolution Genomics
updated 11 weeks ago by 43k • written 11 weeks ago by ★ 2.5k
1,000 results • Page 1 of 20
Recent Votes
Filtering rRNA contamination (indicated by GC content plots) from RNA-seq data
Filtering rRNA contamination (indicated by GC content plots) from RNA-seq data
A: What is the VEP Impact column?
is oxford nanopore technology data paired or single end sequencing?
is oxford nanopore technology data paired or single end sequencing?
Answer: is oxford nanopore technology data paired or single end sequencing?
Answer: Trying to wrap my head around Illumina paired end sequencing
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Recent Replies
Comment: Highest variable features in single cell data by Kazo • 0
I apologize for the confusion. What I meant to say is that, for example, the Trbv17 gene appears among the variable genes. However, when I …
Answer: why renaming Idents in Seurat object doesn't work? by Assa Yeroslaviz ★ 1.8k
I manage to find a workwround, but I don't understand what I did wrong here. my solution was to extract the cluster column as vector and…
Answer: Finding orthologs between genome error by Adrian Altenhoff ★ 1.1k
Hi, thanks for letting us know. In a recent software update, we introduced a problem with the written splice information in the cached …
Comment: Fetch table from clinvar database according to a list of rsid by ashaneev07 ▴ 20
so which one should i prefer? i don't need the entire results i need the condition-Germline table only. (for eg:-from, https://www.ncbi.nlm…
Comment: To get p-values for the TPM by dsull ★ 5.8k
OK, not sure why your intention is to use RSEM p-values for, but at least tell us the commands you ran then otherwise how are we supposed t…
Comment: Fetch table from clinvar database according to a list of rsid by Pierre Lindenbaum 161k
> Don't forget to follow up on your threads. If an answer was helpful, you should upvote it; if the answer resolved your question, you shou…
Comment: different FeatureCounts output for the same data by sehriban.buyukkilic ▴ 10
Sure, I'll inquire about the version of Rsubread. I'll keep you posted if it works :) Thanks
Comment: different FeatureCounts output for the same data by sehriban.buyukkilic ▴ 10
Yeah, let me show you my featureCounts result, it looks like this. It's too low. [1]: /media/images/eb8293fe-e6ae-4b02-92e2-0ba2075b
Comment: Adding CB tag to bam file by Pierre Lindenbaum 161k
samtools addreplacerg is for read groups. This is not what OP asked.
Comment: Adding CB tag to bam file by Maria • 0
When I try ``` samtools addreplacerg -r "@CB\tID:$cell" -o $cell.bam $LINE``` the CB tag gets add to the header, but the tag in every line …
Answer: Figures are disappeared from html report of SnpEff by Pierre Lindenbaum 161k
the remote website providing the javascript or/and the images is down or you're now behind a proxy. Check the firefox console: https://fire…
Comment: Fetch table from clinvar database according to a list of rsid by Pierre Lindenbaum 161k
ah ! and your code doesn't work because clinvar ID is not a rs-ID.
Answer: Fetch table from clinvar database according to a list of rsid by Pierre Lindenbaum 161k
$ cat input.rs rs11203366 rs11203367 rs874881 rs776453694 rs80324279 rs324420 rs112766203 wget -…
Comment: Highest variable features in single cell data by ATpoint 82k
> and these cells are not even in a single cluster. What does this mean? If you run clustering on all cells then every cell is assigned t…
Comment: Is it possible to get a list of representative genomes from a past RefSeq releas by Bertalan_Takacs ▴ 90
Yes, I can tell that, but as far as I see it doesn't contain any other information about the genomes, such as if they were representative i…
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