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News: Course - Network Analysis in Systems Biology with R/Bioconductor
R Systems-Biology Network-Analysis Bioconductor
updated 7 weeks ago by 40k • written 3 months ago by ★ 2.4k
0
votes
0
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206
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News: course on Reproducibility data analysis with R
R Reproducibility Git Github
3 months ago by carlopecoraro2 ★ 2.4k
38
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8
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1.1k
views
6 follow
News: What happens when a bioinformatician has his own genome sequenced for $300?
DNAseq DNA WGS
updated 3 months ago by 35k • written 3 months ago by 10k
4
votes
0
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375
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News: A Practical Introduction to Single-Cell RNA-Seq Data Analysis (November 8-10, 2023 in Berlin, Germany)
NGS RNA-Seq single-cell workshop
3 months ago by David Langenberger 10k
0
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0
replies
399
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News: Hands-On NGS Data Analysis Courses 2023
RNA-seq DNA-seq Workshop
updated 3 months ago by 40k • written 3 months ago by 10k
1
vote
0
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268
views
News: Course - Introduction to Deep Learning for biologists
Genomics Deep-Learning Python NGS
updated 3 months ago by 40k • written 3 months ago by ★ 2.4k
1
vote
0
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292
views
News: Good bioinformatics training resources
NGS
updated 3 months ago by 157k • written 3 months ago by ▴ 70
0
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0
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322
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News: Generalized Linear Models (GLM) course in R
R GLM statistics
3 months ago by carlopecoraro2 ★ 2.4k
0
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0
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317
views
News: course - Advanced Python programming
Python Deep-Learning Machine-Learning
updated 7 weeks ago by 40k • written 4 months ago by ★ 2.4k
3
votes
2
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488
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News: Participate in a NCBI/NIAID Virtual Codeathon: VCF Files for Population Genomics, Jul 31 - Aug 4, 2023
VCF SARS-CoV-2 NCBI Codeathon
4 months ago by PeterC_NCBI ▴ 330
0
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0
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220
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News: Virtual Genome Annotation Workshop
annotation genome workshop
4 months ago by mia.nahom ▴ 10
0
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0
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424
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News: Course - Longitudinal data analysis in R
Longitudinal-Data R Genomics
updated 4 months ago by 40k • written 4 months ago by ★ 2.4k
0
votes
0
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255
views
News: New version of ElasticBLAST (1.1.0) available from NCBI
ElasticBLAST BLAST. NCBI
4 months ago by PeterC_NCBI ▴ 330
0
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0
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231
views
News: Course - Introduction to CRISPR for Ecology and Evolution Studies
Genomics CRISPR
4 months ago by carlopecoraro2 ★ 2.4k
0
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0
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852
views
News: GWAS course
GWAS R
updated 4 months ago by 40k • written 4 months ago by ★ 2.4k
0
votes
0
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319
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News: Course - RNAseq data analysis with R/Bioconductor
R Tidyverse RNA-seq Bioconductor
updated 7 weeks ago by 40k • written 4 months ago by ★ 2.4k
0
votes
0
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297
views
News: Course - Multiplex imagine analysis/ Spatial Omics
Multiplex-Image-Analysis Spatial-Omics
updated 4 months ago by 40k • written 4 months ago by ★ 2.4k
3
votes
3
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834
views
News: NCBI's IgBLAST version 1.21.0 is now available
IgBLAST BLAST T-Cell NCBI receptors
4 months ago by PeterC_NCBI ▴ 330
0
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0
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214
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News: course- Population genomic inference from low-coverage whole-genome sequencing data
Whole-Genome-Sequencing Population-Genomics
updated 4 months ago by 40k • written 4 months ago by ★ 2.4k
0
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0
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244
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News: PROGRAMMING IN R : MOVING FROM BEGINNER TO ADVANCED
Programming Training R
4 months ago by carlopecoraro2 ★ 2.4k
1
vote
0
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551
views
News: NCBI BLAST+ 2.14.0 release includes faster protein and translation search options
NCBI BLAST
4 months ago by PeterC_NCBI ▴ 330
0
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0
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309
views
News: Get Your Science going in 10 Minutes with the Biostar Handbook!
education biostarhandbook
updated 4 months ago by 40k • written 4 months ago by 98k
0
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0
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260
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News: Course - Network Analysis in Systems Biology with R/Bioconductor
R Network-Analysis Bioconductor Systems-Biology
updated 4 months ago by 40k • written 5 months ago by ★ 2.4k
0
votes
0
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283
views
News: Course - Phylogenetic Comparative Methods in R
Comparative-Methods R Phylogenetics
updated 4 months ago by 40k • written 5 months ago by ★ 2.4k
0
votes
2
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919
views
News: 20% Off - Next-Generation Sequencing Data Analysis: A Practical Introduction (May 3-5, 2023 in Munich, Germany)
NGS DNA-Seq variant-calling RNA-Seq workshop
5 months ago by David Langenberger 10k
1
vote
0
replies
310
views
News: Course - Statistics for biologists with R
Statistics R
5 months ago by carlopecoraro2 ★ 2.4k
0
votes
0
replies
347
views
News: GWAS course in June
GWAS
updated 4 months ago by 40k • written 5 months ago by ★ 2.4k
1
vote
1
reply
467
views
News: 20% Off - Bioinformatics Pipeline Development with Nextflow (May 15-17 in Leipzig, Germany)
NGS nextflow RNAseq pipelines DNAseq
5 months ago by David Langenberger 10k
0
votes
0
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320
views
News: Single-cell RNAseq with R/Bioconductor course
scRNAseq Bioconductor R
updated 4 months ago by 40k • written 5 months ago by ★ 2.4k
0
votes
0
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241
views
News: Environmental Metagenomics - 17-21 April
MAGs Metagenomics
updated 5 months ago by 40k • written 5 months ago by ★ 2.4k
1
vote
0
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307
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News: Announcing the 3rd round of the Nextflow and nf-core mentorship
nf-core mentorship nf_core nextflow
updated 5 months ago by 40k • written 5 months ago by ▴ 440
1
vote
0
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316
views
News: New open access publication on ElasticBLAST in BMC Bioinformatics
NCBI ElasticBLAST BLAST
6 months ago by PeterC_NCBI ▴ 330
0
votes
0
replies
322
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News: Pangenomics course in April!
Pangenomics Prokaryotic-Genomics
6 months ago by carlopecoraro2 ★ 2.4k
1
vote
0
replies
393
views
News: Talk from Aaron Lun on Orchestrating Single-Cell Analysis With Bioconductor
scrna-seq
updated 6 months ago by 40k • written 6 months ago by 77k
0
votes
0
replies
316
views
News: Cellosaurus release 45 is available
knowledgebase cell-line
updated 3 months ago by 40k • written 6 months ago by ▴ 110
0
votes
0
replies
264
views
News: Virtual RAD-seq Analysis Workshop!
workshops popgen genomics rad-seq
6 months ago by mia.nahom ▴ 10
0
votes
0
replies
561
views
News: The Canadian Bioinformatics Workshops are back for summer 2023
CBW training workshop
6 months ago by bioinformatics.ca • 0
0
votes
0
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300
views
News: ISMB-affiliated virtual tutorial on Neo4j/Cypher for life sciences
neo4j cypher graph knowledge
6 months ago by Stephen • 0
0
votes
0
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339
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News: Announcing workshop on Declarative Programming in Biology and Medicine (Seattle, Sept. 2023)
medicine declmed declarative icfp precision
5 months ago by Stephen • 0
0
votes
0
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288
views
News: Course live online Introduction to Bayesian Analyses using R, May 8th-12th, 2023
bayesian RProject course online
6 months ago by Sole • 0
0
votes
0
replies
303
views
News: course - Reproducibility in Bioinformatics
Docker Reproducibility
updated 6 months ago by 40k • written 6 months ago by ★ 2.4k
0
votes
2
replies
657
views
News: Course - Metagenomics, metatranscriptomics, and multi'omics for microbial community Studies
Metagenomics Metatranscriptomics Multiomics
updated 6 months ago by 40k • written 6 months ago by ★ 2.4k
10
votes
4
replies
985
views
News: RNA-Seq Data Analysis Workshop - Join us in Berlin, Germany from March 27-30, 2023!
NGS transcriptomics workshop
updated 6 months ago by ▴ 30 • written 7 months ago by 10k
1
vote
0
replies
758
views
News: Summer School in Bioinformatics
Genomics Docker RNA-seq
updated 6 months ago by 40k • written 6 months ago by ★ 2.4k
1
vote
1
reply
507
views
News: Sign-ups for the St. Jude KIDS23 BioHackathon (May 3-5th) open through March 15th!
stjude hackathon
6 months ago by jared.andrews07 ★ 15k
1
vote
0
replies
327
views
News: Course - BIOINFORMATIC ANALYSIS OF TRANSPOSABLE ELEMENTS
Transposable-Elements TE Genome-Assembly
updated 6 months ago by 40k • written 6 months ago by ★ 2.4k
0
votes
0
replies
300
views
News: Environmental Metagenomics course
Environmental-Metagenomics
updated 6 months ago by 40k • written 6 months ago by ★ 2.4k
0
votes
0
replies
297
views
News: Course - GENERALIZED LINEAR MODELS in R
GLM R Generalised-Linear-Model
updated 4 months ago by 40k • written 6 months ago by ★ 2.4k
1
vote
0
replies
350
views
News: Virtual Single Cell RNA-seq Workshop
single genomics cell expression rna-seq workshop gene
7 months ago by mia.nahom ▴ 10
1
vote
0
replies
339
views
News: Advanced Bayesian statistics in R course
Statistics RegressionModeling Bayesian R
7 months ago by carlopecoraro2 ★ 2.4k
1,000 results • Page 2 of 20
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Comment: ncbi error report log for validate fastq issue
Comment: ncbi error report log for validate fastq issue
A: Bowtie2 MAPQ difference using local vs end-to-end alignment
C: Bowtie2 MAPQ difference using local vs end-to-end alignment
Answer: TPM RNA-seq data for differential expression analysis
A: Error When Installing Emboss
Answer: Subclustering of intergated cells from scRNA-seq data
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Comment: Assessing Rockhopper's output by shelkmike ▴ 980
I used Rockhopper only for bacterial genomes assembled into circular contigs or circular scaffolds.
Comment: Unable to install HorvathMammalMethylChip40manifest packages by ATpoint 77k
There is no package of that name in CRAN or Bioconductor. Where do you have it from, so which tutorial you follow?
Comment: Subclustering of intergated cells from scRNA-seq data by fifty_fifty ▴ 60
thank you. This is exactly what I was looking for
Answer: Search RCSB with a list of protein names? by Mensur Dlakic ★ 25k
This is not the most elegant solution, but it should work with previous suggestions. In this remote directory: http://ftp.wwpdb.org/p…
Answer: Automate the Splitting of a VCF File by Sample (bcftools) by Ram 40k
The manual says you can split samples out at once using the `+split` plugin. So, `bcftools +split -Oz -o <PATH> file.vcf.gz` should do the …
Comment: differences between trajectories in conditions with Monocle3 or other tools by Amitm ★ 2.2k
Phate (or Monocle) doesn't do UMAP. If you have done UMAP already (using seurat) then you could use the cell barcode to UMAP cluster label …
Comment: Error: cannot open file 2 for reading From Cufflinks Version 2.2.1 When Attempti by Y • 0
I figured out how to make it work. The bams have to be comma separated not just by space: cd "${input_directory_with_associated_bam_fi…
Comment: Search RCSB with a list of protein names? by Joseph • 0
Hey, this is so close to what I'm looking for - I clarified in my edit. This is a great way to batch download lots of PDBs in RCSB by their…
Comment: Search RCSB with a list of protein names? by Joseph • 0
This is a really neat package, but I don't think it does exactly what I want, so I've clarified my question. This seems like it grabs a PD…
Comment: How to get the gft file to run velocyto for velocity analysis? by Chris ▴ 200
Yes, thank you! I figured it out but I got an error: velocyto run10x -m Hg38_rmsk.gtf WT/outs /cellranger/reference/refdata-cellranger…
Comment: How to get the gft file to run velocyto for velocity analysis? by bk11 ★ 1.3k
You can get from here- [UCSC][1]. Just click on get output botton. [1]: https://genome.ucsc.edu/cgi-bin/hgTables?hgsid=611454127_NtvlaW…
Answer: Search RCSB with a list of protein names? by bk11 ★ 1.3k
You can use `Bio3D` an R Package for this. [http://thegrantlab.org/bio3d_v2/tutorials/installing-bio3d][1] [http://thegrantlab.org/b…
Comment: Search RCSB with a list of protein names? by GenoMax 134k
You can download various types of bulk data files from RCSB here: https://www.rcsb.org/docs/programmatic-access/file-download-services You…
Comment: How to perform hypothesis testing on contingency tables and compare with the nul by RK • 0
Thank you so much
Comment: How to perform hypothesis testing on contingency tables and compare with the nul by Jean-Karim Heriche 26k
So just do a regular chi-squared test as I explained above. The null hypothesis is that there are as many mutated/unmutated trinucleotides …
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