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News: Use your standard DNA variant caller for SNP calling in Bisulfite-Seq data
bisulfite BS-Seq methylation
11 months ago by David Langenberger 9.9k
0
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0
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348
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News: online training - Data Visualization with Python
Python Data-Visualization
updated 10 months ago by 39k • written 11 months ago by ★ 2.3k
0
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0
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382
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News: Cellosaurus release 42 is available
line cell biocuration knowledgebase database
11 months ago by Amos Bairoch ▴ 110
0
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0
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292
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News: Online course- Reproducibility in Bioinformatics - 11-13 July
Docker Reproducibility
updated 5 months ago by 39k • written 11 months ago by ★ 2.3k
0
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0
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348
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News: Online statistics courses
R statistics
11 months ago by carlopecoraro2 ★ 2.3k
0
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1
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406
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News: API for accessing SARS-COV-2 genomic data
rpackage sars genomics api covid
updated 12 months ago by 129k • written 12 months ago by • 0
2
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0
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383
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News: UniProt: Annotation of biologically relevant ligands using ChEBI
binding protein site metal uniprot chebi
12 months ago by Elisabeth Gasteiger ★ 2.2k
0
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0
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329
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News: Online course - Metabarcoding in microbial Ecology
Qiime2 Metabarcoding Microbial-Ecology
updated 5 months ago by 39k • written 12 months ago by ★ 2.3k
3
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1
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438
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News: Free web seminars related to small non-coding RNA bioinformatics
smallRNA microRNA
updated 5 months ago by 39k • written 13 months ago by ▴ 60
0
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0
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301
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News: Online course - Developing R/Bioconductor packages for genomics
Bioconductor R
updated 5 months ago by 39k • written 13 months ago by ★ 2.3k
1
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0
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434
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News: Phase 1 of the NCTR Indel Calling from Oncopanel Sequencing Data Challenge is now live!
oncopanel indel-calling
updated 5 months ago by 39k • written 13 months ago by ▴ 10
0
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0
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898
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News: Pre-Register for the NCTR Indel Calling from Oncopanel Sequencing Data Challenge with FDA’s National Center for Toxicological Research (NCTR) and pre…
oncopanel indel-calling
updated 5 months ago by 39k • written 13 months ago by ▴ 10
0
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1
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2.2k
views
News: Nature Index: Novogene is teaming up with laboratories worldwide for life sciences and human health research
NGS Nature Sequencing
updated 5 months ago by 39k • written 14 months ago by ▴ 300
1
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0
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282
views
News: Reproducibility in Bioinformatics Workshop
Reproducibility
updated 5 months ago by 39k • written 14 months ago by ★ 2.3k
0
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0
replies
284
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News: Cellosaurus release 41 is available
knowledgebase biocuration cell-line
updated 3 months ago by 39k • written 14 months ago by ▴ 110
1
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0
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433
views
News: :: LAST CALL :: Bioinformatics Pipeline Development with Nextflow (April 4-7, 2022)
NGS Pipeline-Development Nextflow
updated 5 months ago by 39k • written 15 months ago by 9.9k
0
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0
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384
views
News: Cellosaurus release 40 is available
knowledgebase cell-line
updated 3 months ago by 39k • written 17 months ago by ▴ 110
0
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0
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321
views
News: Bioinformatics Analysis
Transcriptome genome data-analysis
updated 3 months ago by 39k • written 18 months ago by • 0
0
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0
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364
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News: Bioinformatics
metagenomics metatranscriptomics
updated 3 months ago by 39k • written 18 months ago by • 0
0
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0
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364
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News: UC Davis Bioinformatics Core Workshops
data-analysis
updated 3 months ago by 39k • written 18 months ago by • 0
0
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0
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475
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News: Metagenomics and Metatranscriptomics Workshop!
metagenomics metatranscriptomics
updated 3 months ago by 39k • written 18 months ago by • 0
0
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0
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643
views
News: UC Davis Bioinformatics Core Workshops
Workshops UC-Davis
updated 3 months ago by 39k • written 18 months ago by • 0
1
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1
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509
views
News: QC for Next Generation Sequencing
NGS QC
updated 12 weeks ago by 39k • written 19 months ago by • 0
0
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0
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493
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News: Cellosaurus release 39 is available
knowledgebase cell-line
updated 3 months ago by 39k • written 20 months ago by ▴ 110
0
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0
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596
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News: FINAL CALL :: Online Course - A Practical Introduction to NGS Data Analysis (July 14-16, 2021)
NGS workshop
updated 10 weeks ago by 39k • written 23 months ago by 9.9k
0
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0
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483
views
News: Cellosaurus release 38 is available
knowledgebase cell-line
updated 3 months ago by 39k • written 2.0 years ago by ▴ 110
0
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1
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1.1k
views
News: 5th Berlin Summer School in NGS Data Analysis 2021 (October 4-8)
DNA-Seq Workshop RNA-Seq NGS
updated 3 months ago by 39k • written 2.3 years ago by 9.9k
5
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0
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1.0k
views
News: Bioinformatics Contest 2021
bioinfcontest contest bioinforussia
updated 3 months ago by 39k • written 2.1 years ago by ▴ 50
0
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0
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568
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News: Introduction to Deep Learning
Machine-Learning Deep-Learning Python
updated 3 months ago by 39k • written 2.2 years ago by ★ 2.3k
0
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0
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606
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News: Learn how to do modern reproducible data science
Snakemake Workflows Nextflow
updated 3 months ago by 39k • written 2.2 years ago by ★ 2.3k
0
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0
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497
views
News: Noncoding RNA conference (including bioinformatics)
conference RNA noncoding-RNA
updated 3 months ago by 39k • written 2.2 years ago by ▴ 20
0
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0
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556
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News: Spring Bioinformatics Courses @ Edinburgh Genomics
metagenomics RNA-Seq SNP training
updated 3 months ago by 39k • written 2.2 years ago by ▴ 40
0
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1
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896
views
News: Results are now Available for the precisionFDA Truth Challenge V2
genome
updated 3 months ago by 39k • written 2.8 years ago by ▴ 150
1
vote
0
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654
views
News: Online Training - Analysis of Transposable elements
genome assembly sequence
updated 3 months ago by 39k • written 2.2 years ago by ★ 2.3k
0
votes
0
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554
views
News: Three x 2day online Python courses
Python
updated 3 months ago by 39k • written 2.2 years ago by ▴ 60
0
votes
0
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559
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News: Nine x 2day online R courses
R
updated 3 months ago by 39k • written 2.2 years ago by ▴ 60
3
votes
0
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599
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News: Free Ensembl Browser and REST API virtual workshops in March
Ensembl REST-API genome-browser training workshop
updated 3 months ago by 39k • written 2.3 years ago by ▴ 270
5
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1
reply
1.0k
views
News: Paid opportunity: need microbiome experts for a survey and test of robustness
survey
updated 3 months ago by 39k • written 2.6 years ago by 21k
0
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1
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648
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News: The NCBI Datasets command-line tool now provides ortholog data
ncbi gene json refseq
updated 3 months ago by 39k • written 2.3 years ago by ▴ 50
1
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0
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1.2k
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News: 3-day ONLINE TRAINING - NEXTFLOW
workflow Nextflow
updated 3 months ago by 39k • written 2.3 years ago by ★ 2.3k
0
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0
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671
views
News: ONLINE training - Single-cell RNA-seq analysis with R/Bioconductor. 07-11 June
Bioconductor RNA-Seq Single-Cell R
updated 3 months ago by 39k • written 2.3 years ago by ★ 2.3k
3
votes
0
replies
897
views
News: Online training - Unix and shell scripting for bioinformatics
Linux scripting Unix
updated 3 months ago by 39k • written 2.3 years ago by ★ 2.3k
0
votes
0
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681
views
News: Cellosaurus release 37 is available
knowledgebase cell-line
updated 3 months ago by 39k • written 2.4 years ago by ▴ 110
1
vote
1
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767
views
News: ONLINE TRAINING -GENOME ASSEMBLY USING OXFORD NANOPORE SEQUENCING
genome assembly Nanopore
updated 3 months ago by 39k • written 2.4 years ago by ★ 2.3k
0
votes
0
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980
views
News: DNA Methylation Data Analysis Workshop (April 12-15, 2021 in Berlin)
Epigenetics Bisulfite Methylation
updated 3 months ago by 39k • written 2.4 years ago by 9.9k
1
vote
0
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614
views
News: Online training: Advanced Programming in R
Programming R
updated 3 months ago by 39k • written 2.4 years ago by ★ 2.3k
0
votes
0
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599
views
News: Tutorial on Detecting Structural Variants in ONT data
structural-variants ONT
updated 3 months ago by 39k • written 2.4 years ago by • 0
0
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0
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1.2k
views
News: Online Workshop: Bioinformatics Pipeline Development with Nextflow (May 3-6, 2021)
NGS pipeline Nextflow
updated 3 months ago by 39k • written 2.4 years ago by 9.9k
0
votes
0
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649
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News: Online Training - GENOME-WIDE PREDICTION OF COMPLEX TRAITS - Last days to apply
next-gen genome SNP
updated 3 months ago by 39k • written 2.4 years ago by ★ 2.3k
0
votes
1
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972
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News: :: LAST CALL :: Online Course - A Practical Introduction to NGS Data Analysis (March 1 - 3, 2021)
DNA-Seq Workshop RNA-Seq
updated 3 months ago by 39k • written 2.4 years ago by 9.9k
1,000 results • Page 4 of 20
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Answer: How to extract haplotype data from phased bcf files
Answer: How to extract haplotype data from phased bcf files
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Comment: How to extract haplotype data from phased bcf files by Lynne-95 • 0
Thanks that worked perfectly!
Answer: How to extract haplotype data from phased bcf files by Pierre Lindenbaum 154k
use %TGT (translated genotype) $ bcftools query -f '[%CHROM %POS %TGT\n]'
Comment: convert data frame with character column to data frame with integer column by Basti ★ 1.5k
You would better give an example with values because we don't know what is in each variable so we cannot give you a precise code, but seems…
Comment: RNASeq gene labeling and mRNA filter from bulkRNA data. by ATpoint 72k
This information is annotated in GTF files. You can get them for almost every annotated species from Ensembl. There is a column `gene_bioty…
Answer: DE genes across multiple scRNAseq clusters-are they significantly enriched? by ATpoint 72k
First of all, with thousands of DEGs you might want to choose a DE framework that allows testing against a fold change threshold, such as `…
Comment: PacBio Pipeline and Tools for Variant Call by Kiran ▴ 80
Thanks a lot William, I am Clear now
Comment: The famous WGS dataset, Ashkenazi Trio? by cmdcolin ★ 3.0k
what is valuable information to you
Answer: Why weblogo of biopython doesn't work? by minakshiboruahassam • 0
The weblogo3 application is giving same file even if u run the scripts separately on python standalone or whatever. The weblogo command is …
Answer: Make a BedGraph file by rfran010 ▴ 80
I would suggest bedtools makewindows to generate your 3,000bp bins then bedtools coverage to generate fraction of repeats over your windows…
Answer: What is the best way to clean bulk RNA-seq data? by rfran010 ▴ 80
Honestly, I am a fan of visualizing to select a threshold since these can depend on the specific experiment. I would even just run standard…
Answer: Help with running ATAC using Encode pipeline by rfran010 ▴ 80
Read all instructions carefully Specifically, this info is under the "Input JSON file specification" section with details in the followin…
Answer: BioInformatics, Software by rfran010 ▴ 80
There have been some good suggestions, but it seems like you may be asking one of two questions, either (1) how to do bioinformatics? or (2…
Answer: Genome assembly statistical tools by Bryan • 0
I'll follow up what a few others have mentioned, but I like stats.sh within the BBTools package for raw assembly stats. I'll then polish my…
Comment: how to design a guide RNA by rfran010 ▴ 80
I agree this is very basic CRISPR mechanism and you'd be better off reading sites that could explain better than me. However, there is a lo…
Comment: ATAC peak-calling: same peak ID across multiple experimental conditions? by rfran010 ▴ 80
You want to use the MACS2 score columns? You can retain these with bedtools option `-c` . This will retain the score columns from any merge…
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