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News: Summer School in Bioinformatics
Genomics Docker RNA-seq
updated 13 months ago by 43k • written 13 months ago by ★ 2.5k
1
vote
1
reply
663
views
News: Sign-ups for the St. Jude KIDS23 BioHackathon (May 3-5th) open through March 15th!
stjude hackathon
13 months ago by jared.andrews07 ★ 16k
1
vote
0
replies
435
views
News: Course - BIOINFORMATIC ANALYSIS OF TRANSPOSABLE ELEMENTS
Transposable-Elements TE Genome-Assembly
updated 13 months ago by 43k • written 13 months ago by ★ 2.5k
0
votes
0
replies
438
views
News: Environmental Metagenomics course
Environmental-Metagenomics
updated 13 months ago by 43k • written 13 months ago by ★ 2.5k
0
votes
0
replies
414
views
News: Course - GENERALIZED LINEAR MODELS in R
GLM R Generalised-Linear-Model
updated 11 months ago by 43k • written 13 months ago by ★ 2.5k
1
vote
0
replies
482
views
News: Virtual Single Cell RNA-seq Workshop
single genomics cell expression rna-seq workshop gene
13 months ago by mia.nahom ▴ 10
1
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0
replies
445
views
News: Advanced Bayesian statistics in R course
Statistics RegressionModeling Bayesian R
13 months ago by carlopecoraro2 ★ 2.5k
0
votes
0
replies
375
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News: Course - INTRODUCTION TO THE ANALYSIS OF LONGITUDINAL DATA WITH R
Genomics LongitudinalData R
14 months ago by carlopecoraro2 ★ 2.5k
1
vote
0
replies
902
views
News: The GDC Legacy Archive is retiring soon.
genomic-data-commons tcga gdc
updated 14 months ago by 43k • written 14 months ago by ★ 1.2k
0
votes
0
replies
441
views
News: course MULTIVARIATE DATA ANALYSIS WITH R AND VEGAN
Vegan MULTIVARIATEDATAANALYSIS Statistics R
14 months ago by carlopecoraro2 ★ 2.5k
0
votes
0
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384
views
News: course - single-cell RNAseq with R/Bioconductor
Bioconductor single-cell genomics RNAseq
updated 13 months ago by 43k • written 14 months ago by ★ 2.5k
0
votes
0
replies
567
views
News: Course - Analysis of PROKARYOTIC PANGENOMES
Genomics Pangenomes
updated 14 months ago by 43k • written 14 months ago by ★ 2.5k
5
votes
3
replies
901
views
News: March 13-16: Virtual Nextflow and nf-core training event in 5 languages
nf-core pipeline Nextflow
updated 13 months ago by ▴ 340 • written 14 months ago by 4.5k
0
votes
1
reply
418
views
News: Courses in March. -still a few seats available
Bioconductor Genomics R
updated 14 months ago by 43k • written 14 months ago by ★ 2.5k
0
votes
0
replies
390
views
News: course - Next steps in applied Bayesian regression modeling
Statistics RegressionModeling Bayesian R
14 months ago by carlopecoraro2 ★ 2.5k
0
votes
0
replies
474
views
News: Introduction to GWAS course in June
GWAS R
updated 13 months ago by 43k • written 14 months ago by ★ 2.5k
0
votes
0
replies
734
views
News: Introduction to GWAS course (6th edition) - June, 5th-8th
GWAS R
updated 14 months ago by 43k • written 14 months ago by ★ 2.5k
0
votes
0
replies
353
views
News: Course - Version Control for Researchers
VersionControl GIT Github
14 months ago by carlopecoraro2 ★ 2.5k
0
votes
0
replies
501
views
News: Course - INTRODUCTION TO PYTHON PROGRAMMING FOR BIOLOGISTS
Programming Python
updated 14 months ago by 43k • written 14 months ago by ★ 2.5k
0
votes
0
replies
393
views
News: Eukaryotic Metabarcoding course
eDNA Metabarcoding
updated 14 months ago by 43k • written 14 months ago by ★ 2.5k
0
votes
3
replies
867
views
News: NCBI update complete. Aspera users please update your client.
NCBI Submissions GenBank
14 months ago by PeterC_NCBI ▴ 410
0
votes
0
replies
373
views
News: Course - Mass Spectrometry and Proteomics in R/Bioconductor
Bioconductor MassSpectrometry R Proteomics
14 months ago by carlopecoraro2 ★ 2.5k
1
vote
0
replies
586
views
News: Course - Machine Learning in R (for omics data)
Genomics omics MachineLearning R
15 months ago by carlopecoraro2 ★ 2.5k
2
votes
0
replies
417
views
News: Course - Reproducibility in Bioinformatics
Reproducibility
updated 14 months ago by 43k • written 15 months ago by ★ 2.5k
0
votes
0
replies
378
views
News: course - Multivariate data analysis with R and vegan
Statistics MultivariateAnalysis R vegan
15 months ago by carlopecoraro2 ★ 2.5k
0
votes
2
replies
1.0k
views
News: Online Course - A Practical Introduction to NGS Data Analysis (February 01-03, 2023)
NGS DNAseq variant-calling RNAseq
15 months ago by David Langenberger 11k
0
votes
0
replies
462
views
News: Bioinformatics courses in February
Genomics Bioinformatics-Training
updated 10 months ago by 43k • written 15 months ago by ★ 2.5k
0
votes
0
replies
1.2k
views
News: Reminder: NCBI Aspera access, update Aspera Connect by Feb 1, 2023
Aspera NCBI SRA GenBank
15 months ago by PeterC_NCBI ▴ 410
1
vote
2
replies
674
views
News: Course: Network Analysis in R
NetworkAnalyis R
15 months ago by carlopecoraro2 ★ 2.5k
0
votes
0
replies
471
views
News: de novo RNA-seq Analysis Workshop
virtual workshop rna transcriptome
15 months ago by mia.nahom ▴ 10
0
votes
0
replies
616
views
News: Genomic Prediction course
Selective-Breeding Genomic-Prediction
updated 14 months ago by 43k • written 15 months ago by ★ 2.5k
1
vote
0
replies
681
views
News: course: Meta-analysis in R
Statistics MetaAnalysis R
15 months ago by carlopecoraro2 ★ 2.5k
0
votes
0
replies
550
views
News: GSEA in R/Bioconductor course
Bioconductor R GSEA GeneSetEnrichmentAnalysis
15 months ago by carlopecoraro2 ★ 2.5k
0
votes
0
replies
933
views
News: For NCBI Aspera access, update Aspera Connect by Feb 1, 2023
Aspera NCBI GenBank
15 months ago by PeterC_NCBI ▴ 410
0
votes
0
replies
468
views
News: Metabarcoding in Microbial Ecology
Metabarcoding Qiime2 16S MicrobialEcology R
15 months ago by carlopecoraro2 ★ 2.5k
0
votes
0
replies
439
views
News: Metagenomics tools recommeder system
NGS Metagenomics Recommender-system
updated 15 months ago by 43k • written 15 months ago by • 0
0
votes
0
replies
737
views
News: Hands-On NGS Data Analysis Workshops 2023
NGS Workshop RNA-Seq DNA-Seq
15 months ago by David Langenberger 11k
1
vote
5
replies
1.1k
views
News: Cancer Genomics course - 2 seats left
Genomics Cancer-Genomics R
updated 14 months ago by 43k • written 15 months ago by ★ 2.5k
0
votes
0
replies
447
views
News: Course on Generalised Additive Models In R
Statistics GAMs R
15 months ago by carlopecoraro2 ★ 2.5k
0
votes
1
reply
651
views
News: Sex Chromosome Evolution course
Genomics Sex-Chromosome-Evolution
updated 14 months ago by 43k • written 15 months ago by ★ 2.5k
1
vote
2
replies
1.8k
views
News: New chat server (Discord) for bioinformatics
community
15 months ago by Samuel Lampa ★ 1.3k
0
votes
0
replies
646
views
News: Online course - Genome Assembly and Annotation
Long-reads Genome-Annotation Biodiversity Genome-Assembly
updated 14 months ago by 43k • written 15 months ago by ★ 2.5k
1
vote
3
replies
912
views
News: NCBI BLAST ClusteredNR database now available for blastx and PSI-BLAST searches
PSI-BLAST blastx BLAST NCBI ClusteredNR
15 months ago by PeterC_NCBI ▴ 410
0
votes
0
replies
590
views
News: Winter School in Bioinformatics - last seats available
Genomics Unix RNA-seq docker
updated 14 months ago by 43k • written 16 months ago by ★ 2.5k
0
votes
0
replies
506
views
News: Virtual RNA-seq Analysis (Model Organism) Workshop
virtual expression rna-seq analysis workshop
16 months ago by mia.nahom ▴ 10
0
votes
0
replies
523
views
News: Introduction to R Shiny course
WebApplications R RShiny
16 months ago by carlopecoraro2 ★ 2.5k
1
vote
0
replies
569
views
News: New version of ElasticBLAST (1.0.0) available.
NCBI ElasticBLAST BLAST
16 months ago by PeterC_NCBI ▴ 410
0
votes
1
reply
545
views
News: Courses in January - still a few seats available
R-Shiny Genomics Unix R
updated 14 months ago by 43k • written 16 months ago by ★ 2.5k
0
votes
0
replies
371
views
News: Sex Chromosome Evolution course
Genomics Sex-Chromosome-Evolution
updated 16 months ago by 43k • written 16 months ago by ★ 2.5k
0
votes
0
replies
491
views
News: Cellosaurus release 44 is available
cellosaurus cell-line
updated 16 months ago by 43k • written 16 months ago by ▴ 120
1,000 results • Page 5 of 20
Recent Votes
Comment: What is the real meaning of relative enrichment/peak height of ChIP-seq tracks?
Comment: TCGA2STAT Error: Firehose connection
Answer: HaplotypeCaller - only SNPs
Comment: Bwa sampe - BGI
Comment: Redirection of Duplicate PMIDs
Answer: Redirection of Duplicate PMIDs
A: Should I Remove All Positions Containing A Gap In A Multiple Alignment Prior To
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Recent Replies
Comment: What is the real meaning of relative enrichment/peak height of ChIP-seq tracks? by HyperEvo • 0
Ok, thank you so much~
Comment: GTF file for Rhinolophus sinicus by GenoMax 141k
I was able to get the GTF file. I tried the fasta genome and it seemed to work but I did not complete the download. If you choose to ignore…
Comment: some error in building kraken2 database by Art1ess • 0
I have 2 files output, no error logs... the .kreport file: 100.00 160136511 160136511 U 0 unclassified head .res…
Comment: TCGA2STAT Error: Firehose connection by LauferVA 4.2k
agree. from a data-centric (rather than software centric) standpoint, it shouldn't be hard to get the TCGA data you are looking for from o…
Comment: Redirection of Duplicate PMIDs by LauferVA 4.2k
yep. in this case id definitely start with the grant numbers themselves as others have indicated. i did not recommend this before due to un…
Comment: GTF file for Rhinolophus sinicus by atowns21 • 0
This download doesn't seem to work for me. There is a message on the website saying "Warning: contaminated. Status: RefSeq GCF_001888835.1 …
Answer: HaplotypeCaller - only SNPs by Pierre Lindenbaum 161k
Filter the vcf dowstream after haplotypecaller using bcftools or gatk variantfiltration
Answer: Gene set enrichment analysis differences between 2020 and 2024 by geneontologyhelp ▴ 360
We have releases about monthly in order to keep our data accurate and reflect current understanding. In 4 years, there have been about 40 r…
Comment: How do I use the STARSolo aligner with MGI DNBelab C series HT scRNAseq librarie by GenoMax 141k
Let us know when you find out. Would be a useful thing to know what the data looks like.
Comment: How do I use the STARSolo aligner with MGI DNBelab C series HT scRNAseq librarie by atowns21 • 0
Yes, that is a very good idea. Thanks for the help!
Comment: How do I use the STARSolo aligner with MGI DNBelab C series HT scRNAseq librarie by GenoMax 141k
Only thing would be to try them out. See if you can detect them in the data you have. You could also simply look for unique representativ…
Comment: How to calculate identity percentage between proteins contained in a FASTA file? by GenoMax 141k
`clustal omega` can calculate distance matrix between two proteins (makes sense if your proteins are of similar size). You could try that: …
Comment: Should I use unpaired reads from trimmomatic by swbarnes2 14k
If the unpaired are _2, files, the _1 must exist somewhere. But the simple answer is probably going to be to just use all the _2 only. Yo…
Comment: Is it Acceptable to Have Uniform Quality Scores in a FASTQ File? by GenoMax 141k
> The needless granularity (fake precision) was obvious from the start You are assuming that all data generated is always of great quality…
Answer: Blasting two protein sequences vs two nucleotide sequences by Istvan Albert 100k
There are various versions of blast, that search in translated spaces, see blastx and tblastn https://blast.ncbi.nlm.nih.gov/Blast.cgi …
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