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899 results • Page 5 of 18
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News: Software: BIRCH Bioinformatics System 3.70
alignment Assembly sequence genome RNA-Seq
updated 10 months ago by 43k • written 3.8 years ago by ▴ 460
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0
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799
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News: Training - Introduction to Bioinformatics for beginners
assembly SNP RNA-Seq sequencing
updated 10 months ago by 43k • written 3.8 years ago by ★ 2.5k
0
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0
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749
views
News: Training in Computational Drug Design and Discovery @NIH
Computational-Biology RNA-Seq Drug-Design Biomedical
updated 10 months ago by 43k • written 3.8 years ago by ▴ 140
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0
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654
views
News: Upcoming online UC Davis Bioinformatics Core workshops
Assembly RNA-Seq single-cell
updated 10 months ago by 43k • written 3.8 years ago by ▴ 30
0
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0
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866
views
News: Training - RADseq data analysis
SNP RADseq Stacks
updated 10 months ago by 43k • written 3.8 years ago by ★ 2.5k
0
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0
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827
views
News: Training in Bioinformatics for Beginners @ NIH
NGS Biomedical Training Biomedical-Informatics
updated 10 months ago by 43k • written 3.8 years ago by ▴ 140
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725
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News: Training in Creating Plots, Graphs and Maps using R @ NIH
R-Platform RGraphs Biomedical NGS
updated 10 months ago by 43k • written 3.8 years ago by ▴ 140
6
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7
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2.2k
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News: NCBI wants to remove quality scores from SRA
quality-scores trimming Assembly genome SRA
updated 10 months ago by 43k • written 3.8 years ago by ▴ 40
0
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0
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794
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News: Cellosaurus release 35 is available
knowledgebase cell-line
updated 10 months ago by 43k • written 3.8 years ago by ▴ 120
0
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0
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951
views
News: NGS Data Analysis Trainings (Classroom and Online)
RNA-Seq Training DNA-Seq
updated 10 months ago by 43k • written 3.8 years ago by 11k
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0
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818
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News: Summer School in Bioinformatics (ONLINE, 7th-11th September 2020)
Assembly sequence genome SNP RNA-Seq
updated 10 months ago by 43k • written 3.8 years ago by ★ 2.5k
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0
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1.1k
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News: ONLINE COURSE. Eukaryotic genome assembly USING Pacbio and Hi-C
assembly pacbio long-reads HI-C
updated 10 months ago by 43k • written 3.8 years ago by ★ 2.5k
0
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0
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912
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News: A Practical Introduction to NGS Data Analysis - America Online Edition
NGS workshop DNA-Seq
updated 10 months ago by 43k • written 3.9 years ago by 11k
0
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0
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654
views
News: Course on Deep Learning
Deep-Learning Machine-Learning Python
updated 10 months ago by 43k • written 3.9 years ago by ★ 2.5k
2
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0
replies
665
views
News: Webinar in next hour : Updated BLAST RefSeq rRNA databases for identification and phylogenetic analysis
blast
updated 10 months ago by 43k • written 3.9 years ago by 141k
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0
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524
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News: Final Reminder for the precisionFDA Truth Challenge V2 Submissions
genome
updated 10 months ago by 43k • written 3.9 years ago by ▴ 150
0
votes
0
replies
792
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News: Statistical Computing for Environmental Science with R and Rstudio
Rstudio online-course R-project statistics
updated 10 months ago by 43k • written 3.9 years ago by ▴ 70
0
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0
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766
views
News: Introduction to Bayesian Inference in Practice
statistics MCMC R Bayesian Python
updated 10 months ago by 43k • written 3.9 years ago by ▴ 70
1
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0
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830
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News: Utrecht Bioinformatics Center: online seminars
DNA-damage Utrecht epigenomics
updated 10 months ago by 43k • written 3.9 years ago by ▴ 230
1
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1.1k
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News: ONLINE COURSE Introduction to R for ecologists and evolutionary biologists (IRFB04) This course will be delivered live
R
updated 10 months ago by 43k • written 3.9 years ago by ▴ 110
1
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3
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1.2k
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News: 4th Berlin Summer School in NGS Data Analysis - October 5-9, 2020
NGS RNA-Seq DNA-Seq
updated 10 months ago by 43k • written 4.2 years ago by 11k
0
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0
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600
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News: Extension Announcement for the precisionFDA Truth Challenge V2
genome
updated 10 months ago by 43k • written 3.9 years ago by ▴ 150
2
votes
0
replies
569
views
News: Introduction to NGS data analysis - ONLINE 7th-11th September 2020
Assembly RNA-Seq next-gen-sequencing
updated 10 months ago by 43k • written 3.9 years ago by ★ 2.5k
0
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0
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737
views
News: Last chance to register for online RNA-Seq Workshop June 1-4
RNA-Seq
updated 10 months ago by 43k • written 3.9 years ago by ▴ 30
0
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0
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739
views
News: Training in Bioinformatic Analysis of Next Generation Sequencing Data@NIH
RNA-Seq Biomedical next-gen
updated 10 months ago by 43k • written 3.9 years ago by ▴ 140
2
votes
0
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673
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News: Introduction to Deep Learning; ONLINE 28th September - 1st October
Machine-Learning Deep-Learning Python
updated 10 months ago by 43k • written 3.9 years ago by ★ 2.5k
2
votes
0
replies
664
views
News: Online course - low-coverage whole-genome sequencing data analysis
SNP
updated 10 months ago by 43k • written 3.9 years ago by ★ 2.5k
0
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0
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659
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News: Training in Molecular Modeling and Molecular Dynamics @NIH, July 21 - 24, 2020
Dynamics RNA-Seq Modeling next-gen
updated 10 months ago by 43k • written 3.9 years ago by ▴ 140
0
votes
0
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746
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News: Training in Programming for Biomedical Researchers @NIH, July 14 - 17, 2020
Researchers Biomedical Programming
updated 10 months ago by 43k • written 3.9 years ago by ▴ 140
2
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0
replies
703
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News: Interested in Machine Learning?
Machine-Learning R
updated 10 months ago by 43k • written 3.9 years ago by ★ 2.5k
1
vote
0
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837
views
News: Ensembl launches COVID-19 resource
genome coronavirus COVID-19 ensembl SARS-CoV-2
updated 10 months ago by 43k • written 3.9 years ago by ▴ 330
0
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0
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579
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News: The Veterans Health Administration (VHA) Innovation Ecosystem and precisionFDA are launching the COVID-19 Risk Factor Modeling Challenge on June 1st
R
updated 10 months ago by 43k • written 3.9 years ago by ▴ 150
8
votes
8
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2.9k
views
News: Coronavirus Genome Analysis: a new volume in the Biostar Handbook
biostar-handbook education
updated 10 months ago by 43k • written 4.1 years ago by 100k
0
votes
0
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792
views
News: Training in Statistical Analysis using R @NIH, July 8 - 10, 2020
R Biomedical next-gen Statistical-analysis
updated 10 months ago by 43k • written 3.9 years ago by ▴ 140
0
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0
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511
views
News: New Datasets Available and Extension Announcement for the precisionFDA Truth Challenge V2
R
updated 10 months ago by 43k • written 4.0 years ago by ▴ 150
2
votes
4
replies
1.2k
views
News: Course ONLINE - RNAseq data analysis with R and Bioconductor (15-19 June)
R RNA-seq Bioconductor
updated 10 months ago by 43k • written 4.0 years ago by ★ 2.5k
0
votes
0
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719
views
News: Training in Rosetta for Molecular Modeling and Design @NIH,June 22-25,2020
Data-analysis Modeling RNA-Seq Molecular-design
updated 10 months ago by 43k • written 4.0 years ago by ▴ 140
0
votes
0
replies
721
views
News: Intermediate Python for Bioinformatics 2020
python data-analysis
updated 10 months ago by 43k • written 4.0 years ago by • 0
0
votes
0
replies
693
views
News: One Week Reminder for the precisionFDA Gaining New Insights by Detecting Adverse Event Anomalies Using FDA Open Data Challenge
R
updated 10 months ago by 43k • written 4.0 years ago by ▴ 150
0
votes
0
replies
709
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News: Training in Advanced Transcriptomics (RNA-Seq) Analysis@NIH, June 9-12,2020
RNA-Seq Biomedical next-gen
updated 10 months ago by 43k • written 4.0 years ago by ▴ 140
0
votes
0
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659
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News: Training in Variant Analysis@NIH,June 2-5, 2020
Variant-analysis Genotype Variant-calling next-gen
updated 10 months ago by 43k • written 4.0 years ago by ▴ 140
0
votes
0
replies
671
views
News: Gene Ontology Virtual User Meeting
Ontology GO Enrichment Gene-Ontology
updated 10 months ago by 43k • written 4.0 years ago by • 0
0
votes
0
replies
567
views
News: Check Out The Upcoming Federal Crowdsourcing Webinar Series: A precisionFDA Strike for Public Health
genome
updated 10 months ago by 43k • written 4.0 years ago by ▴ 150
0
votes
1
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1.4k
views
News: Online Workshop - A Practical Introduction to NGS Data Analysis (May 27-29,2020)
NGS DNA-seq Workshop
updated 10 months ago by 43k • written 4.0 years ago by 11k
0
votes
0
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886
views
News: Training in Metagenomics Data Analysis, May 26-29,2020
training Metagenomics next-gen Data-analysis
updated 10 months ago by 43k • written 4.0 years ago by ▴ 140
0
votes
0
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743
views
News: The precisionFDA Truth Challenge V2 is now Live!
genome
updated 10 months ago by 43k • written 4.0 years ago by ▴ 150
2
votes
0
replies
576
views
News: Course online - Introduction to Deep Learning; 28th September - 1st October
Deep-Learning Python
updated 10 months ago by 43k • written 4.0 years ago by ★ 2.5k
0
votes
0
replies
808
views
News: bioinfo-core workshop at virtual ISMB 2020
conferences ismb
updated 10 months ago by 43k • written 4.0 years ago by 5.3k
0
votes
0
replies
531
views
News: International Conference on Machine learning and Cloud Computing (MLCL 2020)
Assembly SNP sequencing
updated 10 months ago by 43k • written 4.0 years ago by ▴ 10
6
votes
4
replies
1.3k
views
News: Course online - Comparative Genomics
assembly genome next-gen alignment
updated 10 months ago by 43k • written 4.0 years ago by ★ 2.5k
899 results • Page 5 of 18
Recent Votes
Detecting somatic variants in non-tumor tissue without normals
Answer: Sequence read length shorter than flow cell specification
Answer: Sequence read length shorter than flow cell specification
Comment: Why gatk VariantAnnotator required bam and coverage files
A: Generate Vcf.Gz File And Its Index File Vcf.Gz.Tbi
Visualization of ChIP-seq data using Heatmaps (Updated: 06/10/16)
Answer: How do I get the 3bp sequence on either side of a co-ordinate
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Scholar to ATpoint 82k
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Recent Replies
Comment: Treatment VS Control in Single Cell RNAseq analysis by ATpoint 82k
Open a new question, with details.
Comment: Normalize scRNAseq data to housekeeping genes to compare several datasets by ATpoint 82k
I recommend https://bioconductor.org/books/3.18/OSCA.basic/normalization.html as well as the "advanced" section in this book.
Comment: Why gatk VariantAnnotator required bam and coverage files by QX • 0
thank you!
Comment: Treatment VS Control in Single Cell RNAseq analysis by kilcdincer ▴ 10
Hello, I have more or less same experimental setting and was wondering how you proceeded with your analysis? Can I reach its GitHub reposit…
Comment: BLAST using both nucleotides and taxonomic local databases by GenoMax 141k
> I ask this as some BLAST command fields as scinames or sblastnames do not give any output with a classic nt BLAST If that information is…
Answer: BLAST using both nucleotides and taxonomic local databases by 5heikki 11k
This has been discussed [many times][1] [1]: https://www.biostars.org/p/76551/
Answer: why renaming Idents in Seurat object doesn't work? by Bioinfotec ▴ 10
I think when you give indent to seuObj : Idents(seuObj) <- 'RNA_snn_res.0.1' You may wrongly assign other value to it such as …
Answer: ScRNAseq-How to correctly choose cell type marker genes by Bioinfotec ▴ 10
In fact, there is no gold standard for cell type annotation. To achieve correct cell type classification, you can combine the two methos. F…
Answer: ScRNA data question by Bioinfotec ▴ 10
In violin plot, a dot represents a cell. Actually, the straight lines you see in your infected image just means these cells have the same e…
Comment: Sequence read length shorter than flow cell specification by GenoMax 141k
> the have sent data with different sequencing read lengths: 55bp pair ended and 80bp single ended If they sent data that is not what you…
Comment: How to know synonymous and non-synonymous SNPs from transcriptome sequencing by rohitsatyam102 ▴ 840
I have some off-the-chart dN/dS values for few genes (>20) when using your script on VCF obtained from a 20K plasmodium genomes (pf7K). | …
Answer: Sequence read length shorter than flow cell specification by ATpoint 82k
It is the amount of reagent in the kit that determines read length. Sometimes index cycle reagents are allocated to R1/R2 or they used anot…
Comment: Why gatk VariantAnnotator required bam and coverage files by Pierre Lindenbaum 161k
you don't need the bam file https://gatk.broadinstitute.org/hc/en-us/articles/13832654601755-VariantAnnotator : VariantAnnotator …
Comment: GAPIT p-value significance threshold by ginellegrenier • 0
Hi, I was wondering if you have found a solution to this? Thanks!
Comment: PCA plot by jkim ▴ 170
cross posted in bioconductor. [https://support.bioconductor.org/p/9157968/][1] [1]: https://support.bioconductor.org/p/9157968/
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