updated 5 weeks ago by
Biostar
1.8k
•
written 6.5 years ago by
Istvan Albert
98k
743
votes
162
replies
113k
views
101 follow
122
votes
42
replies
9.0k
views
21 follow
updated 3 months ago by
Ram
39k
•
written 10.5 years ago by
Istvan Albert
98k
81
votes
39
replies
6.2k
views
11 follow
updated 3 months ago by
Ram
39k
•
written 10.4 years ago by
Istvan Albert
98k
59
votes
31
replies
3.7k
views
12 follow
updated 7 weeks ago by
Ram
39k
•
written 6.4 years ago by
David Langenberger
9.9k
11
votes
25
replies
5.1k
views
15 follow
updated 8 weeks ago by
Ram
39k
•
written 7.7 years ago by
DCGenomics
▴
330
57
votes
24
replies
5.6k
views
14 follow
updated 8 months ago by
Ram
39k
•
written 7.7 years ago by
Istvan Albert
98k
54
votes
24
replies
3.3k
views
12 follow
updated 8 weeks ago by
Ram
39k
•
written 7.2 years ago by
poisonAlien
★
3.1k
24
votes
21
replies
6.1k
views
9 follow
45
votes
19
replies
5.7k
views
8 follow
updated 3 months ago by
Ram
39k
•
written 10.7 years ago by
Giovanni M Dall'Olio
27k
15
votes
18
replies
7.4k
views
6 follow
10
votes
17
replies
2.7k
views
7 follow
51
votes
17
replies
3.3k
views
updated 3 months ago by
Ram
39k
•
written 8.2 years ago by
Istvan Albert
98k
12
votes
17
replies
3.4k
views
6 follow
21
votes
16
replies
5.2k
views
6 follow
updated 14 months ago by
Ram
39k
•
written 8.4 years ago by
ugly.betty77
★
1.1k
45
votes
16
replies
5.1k
views
12 follow
updated 14 days ago by
Ram
39k
•
written 5.5 years ago by
Hussain Ather
▴
970
11
votes
13
replies
2.5k
views
updated 7 weeks ago by
Ram
39k
•
written 6.8 years ago by
Ben_Ensembl
★
2.2k
48
votes
13
replies
25k
views
10 follow
6
votes
13
replies
1.5k
views
14
votes
11
replies
2.4k
views
6 follow
updated 13 days ago by
Ram
39k
•
written 5.4 years ago by
anicet.ebou
▴
170
11
votes
11
replies
1.3k
views
8 follow
updated 6 days ago by
Ram
39k
•
written 4.5 years ago by
carlopecoraro2
★
2.3k
21
votes
11
replies
8.9k
views
6 follow
7
votes
11
replies
1.6k
views
updated 16 days ago by
Ram
39k
•
written 5.8 years ago by
Paul Kutzner
▴
100
18
votes
11
replies
3.5k
views
19
votes
11
replies
6.4k
views
updated 3 months ago by
Ram
39k
•
written 10.7 years ago by
Istvan Albert
98k
8
votes
10
replies
3.5k
views
22
votes
10
replies
5.0k
views
27
votes
9
replies
3.6k
views
22
votes
9
replies
6.1k
views
updated 4 months ago by
Ram
39k
•
written 8.0 years ago by
David Langenberger
9.9k
9
votes
9
replies
6.9k
views
News:
NovaSeq quality analysis
updated 19 days ago by
Ram
39k
•
written 5.9 years ago by
Brian Bushnell
18k
13
votes
9
replies
1.9k
views
17
votes
9
replies
3.3k
views
updated 3 months ago by
Ram
39k
•
written 9.7 years ago by
Pierre Lindenbaum
154k
6
votes
9
replies
3.7k
views
updated 12 weeks ago by
Ram
39k
•
written 8.9 years ago by
Pierre Lindenbaum
154k
0
votes
9
replies
2.0k
views
updated 12 weeks ago by
Ram
39k
•
written 8.9 years ago by
Matt Shirley
10k
7
votes
8
replies
3.8k
views
12
votes
8
replies
6.5k
views
8
votes
8
replies
2.3k
views
written 3.2 years ago by
Istvan Albert
98k
7
votes
8
replies
1.5k
views
updated 14 days ago by
Ram
39k
•
written 5.5 years ago by
tiagoantao
▴
690
13
votes
8
replies
2.3k
views
updated 8 weeks ago by
Ram
39k
•
written 7.2 years ago by
Anima Mundi
★
2.9k
12
votes
8
replies
3.0k
views
updated 3 months ago by
Ram
39k
•
written 9.9 years ago by
David Langenberger
9.9k
6
votes
7
replies
3.0k
views
8 months ago by
Rory Stark
★
1.7k
12
votes
7
replies
3.4k
views
23
votes
7
replies
4.1k
views
updated 12 weeks ago by
Ram
39k
•
written 9.1 years ago by
Pierre Lindenbaum
154k
24
votes
7
replies
4.1k
views
updated 3 months ago by
Ram
39k
•
written 9.9 years ago by
Pierre Lindenbaum
154k
17
votes
7
replies
8.6k
views
updated 14 months ago by
Ram
39k
•
written 8.5 years ago by
David Langenberger
9.9k
13
votes
7
replies
5.2k
views
25
votes
7
replies
5.8k
views
updated 3 months ago by
Ram
39k
•
written 9.6 years ago by
Pierre Lindenbaum
154k
10
votes
7
replies
2.0k
views
27
votes
7
replies
3.2k
views
updated 3 months ago by
Ram
39k
•
written 10.3 years ago by
Istvan Albert
98k
25
votes
7
replies
2.4k
views
6 follow
updated 11 months ago by
Ram
39k
•
written 8.1 years ago by
Pierre Lindenbaum
154k
6
votes
7
replies
4.9k
views
Recent Votes
Recent Locations •
All
New York, just now
United States, just now
EU, 1 minute ago
France, 2 minutes ago
Bologna, 5 minutes ago
Stony Brook University, NY, 6 minutes ago
Oviedo, 7 minutes ago
Recent Awards •
All
Popular Question to
tarek.mohamed
▴
350
Popular Question to
synat.keam
▴
70
Popular Question to
Maria17
▴
10
Popular Question to
Ahmad
▴
10
Popular Question to
Jonathan Lefebre
▴
40
Teacher to
colindaven
4.8k
Popular Question to
Omics data mining
▴
220
Recent Replies
Answer: BioInformatics, Software
by
Jesse
▴
560
Here's a couple that are geared toward hands-on bioinformatics learning:
* [rosalind.info](https://rosalind.info)
* [sandbox.bio](htt…
Comment: How GATK pipeline called a homozygeous alternate allele (1/1) although one copy
by
Jeremy Leipzig
21k
> So how GATK called this ref allele if there is no reads supporting it
it didn't call it reference. it called it hom_alt. where in your f…
Comment: mutational signatures in different tumor samples
by
Vincent Laufer
★
2.9k
as far as im concerned, thats a recommendation not a disclaimer
Comment: including samples for which group is unknown to help adjust for another variable
by
Vincent Laufer
★
2.9k
Actually, I just remembered the perfect paper to illustrate that idea. Look at this: https://pubmed.ncbi.nlm.nih.gov/35976223/. In this man…
Comment: including samples for which group is unknown to help adjust for another variable
by
Vincent Laufer
★
2.9k
yep! updated my answer to respond to this. i think they ARE biological variables. it is understanding the nature of those variables that is…
Answer: ggsave() bug in ggplot2?
by
Medeea
•
0
I think the issue is solved with saving the file as .png
There must be a problem with the .jpg format then.
Thanks everyone for the va…
Comment: ggsave() bug in ggplot2?
by
Ram
39k
Try PDF. You won't need dpi for that. Also, do things work well if you use the lower level `png(); ggplot(); dev.off();` sequence instead o…
Comment: How to calculate kinship matrix table from vcf file
by
chrchang523
10k
The last vcftools release was in 2018. It has been superseded by bcftools for most purposes, and by plink 1.9/2.0 for most analytical func…
Comment: NarrowPeak format -Peak field
by
ATpoint
72k
I do not follow, can you please add a chr-start-end example.
Comment: BioPython: convert fasta to fastq without quality score input file
by
capemaster
•
0
The command with `gawk` is:
awk 'BEGIN {RS = ">" ; FS = "\n"} NR > 1 {print $1"\n"$2"\n+\n"gensub(/./, "I", "g", $2)}'
Comment: The inchworm process failed. Trinity running error.
by
GenoMax
129k
So with 600M reads you will need a minimum of 600GB of RAM per trinity recommendations.
If you are not able to get more memory consider no…
Comment: How GATK pipeline called a homozygeous alternate allele (1/1) although one copy
by
Ram
39k
I don't understand what you're saying. Your allele is different from the ref allele so it needs the sample to support that? Why?
Give me t…
Comment: How GATK pipeline called a homozygeous alternate allele (1/1) although one copy
by
mohsamir2016
▴
30
Sure, but n my case 1/1 the allel is different from the reference allele and it called it as T, for instance. So it needs reads in the samp…
Traffic: 2661 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6