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News:
The Biostar Handbook. A bioinformatics e-book for beginners.
training
tutorial
News
handbook
updated 4 months ago by
Biostar
1.5k • written 6.2 years ago by
Istvan Albert
96k
122
votes
42
replies
8.6k
views
21 follow
News:
Help Make Biostar Better! Add Your Feedback, Opinions And Suggestions.
biostar
meta
News
updated 6.1 years ago by
jonasmst
▴ 400 • written 10.2 years ago by
Istvan Albert
96k
81
votes
39
replies
5.9k
views
11 follow
News:
State Of Biostar - Future Directions (January 2013)
biostar
News
updated 10.0 years ago by
João Rodrigues
★ 2.5k • written 10.1 years ago by
Istvan Albert
96k
59
votes
31
replies
3.3k
views
12 follow
News:
Example of how bioinformaticians can publish in Scientific Reports (by nature publishing group) using publicly available NGS data
publication
NGS
News
updated 6.1 years ago by
helene
▴ 50 • written 6.1 years ago by
David Langenberger
9.8k
11
votes
25
replies
4.9k
views
15 follow
News:
Questions for the NCBI Next Generation Sequencing Online Workshop Can be Posted with the NCBI_NOW Tag
NCBI_NOW
News
updated 4 months ago by
Ram
37k • written 7.4 years ago by
DCGenomics
▴ 320
57
votes
24
replies
5.4k
views
14 follow
News:
Join us in building a bioinformatics resource: The Biostar Handbook
biostar-handbook
updated 4 months ago by
Ram
37k • written 7.4 years ago by
Istvan Albert
96k
54
votes
24
replies
3.1k
views
12 follow
News:
Big news from Microsoft. BASH on windows.
windows
News
written 6.8 years ago by
poisonAlien
★ 3.1k
24
votes
21
replies
5.6k
views
9 follow
News:
Misunderstood parameter of NCBI BLAST
alignment
blast
News
4.3 years ago by
Farbod
★ 3.3k
45
votes
19
replies
5.5k
views
8 follow
News:
Gamestorming For Bioinformatics
News
10.4 years ago by
Giovanni M Dall'Olio
27k
15
votes
18
replies
7.2k
views
6 follow
News:
New Free Community Tutorial Website For Bioinformatics Learning
chip-seq
snp
News
rna-seq
genome
updated 16 months ago by
Ram
37k • written 9.5 years ago by
rob234king
▴ 610
10
votes
17
replies
2.5k
views
7 follow
News:
Tell us what you think of the ENA browser?
ena
News
updated 13 months ago by
predeus
★ 1.8k • written 6.2 years ago by
Laura
★ 1.8k
50
votes
17
replies
3.2k
views
News:
Biostars 3.0 is now under testing. It has groups, charms and other interesting features.
biostar
meta
updated 7 months ago by
Ram
37k • written 7.9 years ago by
Istvan Albert
96k
12
votes
17
replies
3.1k
views
6 follow
News:
A programming language for living cells [Cello]
dna
language
research
sequence
News
6.8 years ago by
Sukhi Singh
11k
21
votes
16
replies
5.0k
views
6 follow
News:
Pandora's Toolbox - a collection of bioinformatics programs
Assembly
alignment
RNA-Seq
updated 10 months ago by
Ram
37k • written 8.1 years ago by
ugly.betty77
★ 1.1k
45
votes
16
replies
4.8k
views
12 follow
News:
Google announces DeepVariant
genome
deep learning
google
News
updated 5.1 years ago by
Chris Miller
22k • written 5.2 years ago by
Hussain Ather
▴ 970
48
votes
13
replies
24k
views
10 follow
News:
The New Grch38 Human Genome Browser Has Arrived!
ucsc
assembly
GRCh38
hg38
updated 12 months ago by
Ram
37k • written 8.9 years ago by
Giovanni M Dall'Olio
27k
11
votes
13
replies
2.4k
views
News:
Ensembl datacentre shut-down: Friday 26th August - Tuesday 30th August 2016
Ensembl
Maintenance
News
6.4 years ago by
Ben_Ensembl
★ 2.2k
6
votes
13
replies
1.3k
views
News:
Ensembl reduced functionality: 10th March-16th April 2020
Ensembl
VEP
BLAT
service
News
5 months ago by
Ben_Ensembl
★ 2.2k
19
votes
11
replies
6.3k
views
News:
Solid Software Tools: Denovo Assembly/Xsq Tools Pipeline Mirrored At Biostar
News
updated 9 months ago by
Ram
37k • written 10.4 years ago by
Istvan Albert
96k
14
votes
11
replies
2.2k
views
6 follow
News:
Announcing bioSyntax: Syntax highlighting for biological files
bioinformatics
computational biology
News
updated 4.8 years ago by
ababaian
▴ 50 • written 5.1 years ago by
anicet.ebou
▴ 170
18
votes
11
replies
3.3k
views
News:
Full Genome Sequencing Service 30x whole human genome sequencing for $3,490 (project cancelled)
genome
next-gen-sequencing
updated 13 months ago by
Ram
37k • written 8.4 years ago by
hcatlin
▴ 100
7
votes
11
replies
1.5k
views
News:
Bringing the power of Big Data to biomedical researchers
NGS
biomedical research
News
updated 5.5 years ago by
Michael Dondrup
52k • written 5.5 years ago by
Paul Kutzner
▴ 100
11
votes
11
replies
1.2k
views
8 follow
News:
Python Data Visualization Course. Last 3 spots left
next-gen
News
updated 4.2 years ago by
JohnBlue81
▴ 300 • written 4.2 years ago by
carlopecoraro2
★ 2.2k
21
votes
11
replies
8.7k
views
6 follow
News:
NovaSeq from Illumina (updated info)
illumina
NovaSeq
News
5.3 years ago by
GenoMax
125k
8
votes
10
replies
3.4k
views
News:
New versions of Minia and DSK (2.0.x)
minia
dsk
assembly
gatb
updated 9 months ago by
Ram
37k • written 8.0 years ago by
Rayan Chikhi
★ 1.5k
22
votes
10
replies
4.9k
views
News:
samtools/bcftools/htslib 1.0 released
htslib
samtools
bcftools
updated 13 months ago by
Ram
37k • written 8.5 years ago by
rtliu
★ 2.2k
17
votes
9
replies
3.2k
views
News:
My Ncbi Curriculum Vitae Web Application: Sciencv
ncbi
job
News
updated 9.4 years ago by
Giovanni M Dall'Olio
27k • written 9.4 years ago by
Pierre Lindenbaum
152k
27
votes
9
replies
3.5k
views
News:
OSX 10.11 released 30th Sep will be "rootless"
mac
osx
updated 4 months ago by
Ram
37k • written 7.4 years ago by
John
13k
22
votes
9
replies
5.9k
views
News:
Epigenetics Workshop - DNA Methylation Data Analysis
bisulfite-sequencing
workshop
epigenetics
updated 4 weeks ago by
Ram
37k • written 7.7 years ago by
David Langenberger
9.8k
0
votes
9
replies
1.9k
views
News:
Practical Genomics: From Biology to Biostatistics Workshop (Baltimore, MD)
workshop
News
updated 14 months ago by
Ram
37k • written 8.6 years ago by
Matt Shirley
10k
13
votes
9
replies
1.8k
views
News:
Inviting NEW Biostars moderators to join Biostars slack channel
moderator
slack
News
updated 4.1 years ago by
ATpoint
68k • written 4.7 years ago by
GenoMax
125k
6
votes
9
replies
3.6k
views
News:
1000 Genomes : The Initial Phase 3 variant list and phased genotypes.
News
1000genomes
updated 15 months ago by
Ram
37k • written 8.6 years ago by
Pierre Lindenbaum
152k
9
votes
9
replies
6.7k
views
News:
NovaSeq quality analysis
sequencing
News
5.6 years ago by
Brian Bushnell
18k
8
votes
8
replies
2.2k
views
News:
Coronavirus Genome Analysis: a new volume in the Biostar Handbook
biostar handbook
bioinformatics
education
News
written 2.9 years ago by
Istvan Albert
96k
7
votes
8
replies
1.4k
views
News:
A new Stack Exchange site for Research Computing
unix
linux
programming
News
updated 5.2 years ago by
GenoMax
125k • written 5.2 years ago by
tiagoantao
▴ 690
12
votes
8
replies
2.9k
views
News:
'Potential Rna-Dna Binding Site In Alu Repeat', Or 'Why Should I Allow Multiple Mapping Positions When Analyzing Chipseq Data?'
chipseq
rna
binding
mapping
News
9.6 years ago by
David Langenberger
9.8k
7
votes
8
replies
3.6k
views
News:
Next-Gen Sequencing Tutorials On Cubelp (Cranfield Bioinformatics Electronic Learning Platform)
genome
chip-seq
snp
assembly
updated 4 months ago by
Ram
37k • written 9.5 years ago by
rob234king
▴ 610
12
votes
8
replies
6.3k
views
News:
rRNA Depletion / Poly-A Selection Responsible for RNA-seq Bias
RNA-seq-bias
News
rRNA-depletion
updated 14 months ago by
Ram
37k • written 8.6 years ago by
support
▴ 640
13
votes
8
replies
2.2k
views
News:
NCBI is going to eliminate GI identifiers
GI
number
identifier
ncbi
News
6.9 years ago by
Anima Mundi
★ 2.9k
17
votes
7
replies
8.4k
views
News:
Upcoming NGS Workshop: A Beginner's Guide to NGS Data Analysis
workshop
Assembly
transcriptomics
RNA-Seq
updated 10 months ago by
Ram
37k • written 8.2 years ago by
David Langenberger
9.8k
10
votes
7
replies
1.6k
views
News:
Linux for Biologists e-book (free to read online)
linux
python
galaxy
conda
virtual-machine
16 months ago by
vimalkvn
▴ 310
23
votes
7
replies
3.9k
views
News:
Research accounts on GitHub
github
News
git
updated 16 months ago by
Ram
37k • written 8.7 years ago by
Pierre Lindenbaum
152k
21
votes
7
replies
7.1k
views
News:
Survey: Rna-Seq Analysis For Differential Gene/Transcript Expression [Updated With Results]
rna-seq
alignment
differential
gene
transcript
News
10.2 years ago by
bodhisattvax
▴ 250
25
votes
7
replies
2.3k
views
6 follow
News:
Who qualifies to be a bioinformatician?
resume
bioinformatician
vc
updated 7 months ago by
Ram
37k • written 7.8 years ago by
Pierre Lindenbaum
152k
13
votes
7
replies
5.0k
views
News:
Free HiSeq X Ten human genome fastq test data
HiSeq-X-Ten
Human-genome
Fastq
next-gen
updated 13 months ago by
Ram
37k • written 8.5 years ago by
rbagnall
★ 1.8k
25
votes
7
replies
5.7k
views
News:
Pubmed Commons : A System That Enables Researchers To Share Their Opinions About Scientific Publications
ncbi
pubmed
News
9.3 years ago by
Pierre Lindenbaum
152k
6
votes
7
replies
2.5k
views
News:
New in DiffBind: dba.plotProfile() - Peak profiles and profile heatmaps
DiffBind
ChIP-seq
deepTools
visualization
ATAC-seq
4 months ago by
Rory Stark
★ 1.6k
24
votes
7
replies
4.0k
views
News:
#Bioinformatics Crowdcoding
News
updated 8.8 years ago by
Rad
▴ 800 • written 9.6 years ago by
Pierre Lindenbaum
152k
12
votes
7
replies
3.2k
views
News:
Welcome Ensembl REST with more endpoints!
rest-api
News
ensembl
updated 12 months ago by
Ram
37k • written 8.3 years ago by
Denise CS
★ 5.2k
6
votes
7
replies
1.4k
views
News:
NCBI wants to remove quality scores from SRA
SRA
quality scores
genome
Assembly
trimming
News
updated 2.6 years ago by
GenoMax
125k • written 2.6 years ago by
zhousun21
▴ 40
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Comment: RNAseq for DE purpose
Answer: High downstream gene expression
Answer: High downstream gene expression
Answer: High downstream gene expression
Answer: 'SyntaxError': 'return' outside function?
Comment: Analyzing bulk RNA-seq
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Comment: STAR is running but .sam file size does not increase after hours mapping
by
GenoMax
125k
Memory =/= disk storage. Likely you will need to diagnose this yourself since we don't have access to your data/server. Your command obvio…
Comment: STAR is running but .sam file size does not increase after hours mapping
by
luzglongoria
▴ 40
Thanks for your reply. It is not a problem of memory since I can run other mapping analyses with no problem (I get big Sam output files w…
Comment: Translating gene names to entrez id's
by
GenoMax
125k
https://www.biostars.org/u/123097/ : Please post this as a new question. It is not directly related to this thread. Once you do that you ca…
Comment: Translating gene names to entrez id's
by
eliska.ochodkova
• 0
Dear all, I want to use the GoSim package to calculate the IC similarity. I'm trying to set the parameters of setEvidenceLevel(), but wr…
Comment: STAR is running but .sam file size does not increase after hours mapping
by
GenoMax
125k
Is this a server administered by a sys admin? Do you know if individual user accounts have "quota"? If your user account has a storage qu…
Comment: STAR is running but .sam file size does not increase after hours mapping
by
luzglongoria
▴ 40
If I do df -h then I get Filesystem Size Used Avail Use% Mounted on devtmpfs …
Comment: RNASeq differential expression masked by pathways disregulation
by
i.sudbery
16k
It you really do have a reason to suspect that the biology of samples from CC1 is different from the biology of samples from CC2, and that …
Answer: High downstream gene expression
by
i.sudbery
16k
You don't show which species this is. I've taken a quick look at the human and mouse genome at those locations and neither have any genes a…
Comment: Annotating ENS codes to gene name
by
GenoMax
125k
This is a FAQ, Some past threads linked here: https://www.biostars.org/p/9552097/#9552101
Comment: STAR is running but .sam file size does not increase after hours mapping
by
GenoMax
125k
You are not running out of storage quota on the particular disk?
Comment: STAR is running but .sam file size does not increase after hours mapping
by
luzglongoria
▴ 40
I have tried reducing the number of threads but it is the same.
Answer: High downstream gene expression
by
Matthias Zepper
2.9k
1. Impossible to tell from the information you are showing. Could be misalignments, [read-through transcription][1] ([detection pipeline][…
Answer: Annotating ENS codes to gene name
by
Apex92
▴ 240
You can either use biomart to download all gene ids and gene names and then intersect them with your current table. Or you can use your ann…
Comment: CoveragePlot in Signac from MACS2 Object
by
bioinformatics.girl
• 0
This does not work. I called for the gene "Cd8a" for instance for the mouse genome and it says "Gene not found" even though it should appea…
Comment: How to extract the list of genes from TCGA CNV data
by
Kevin Blighe
84k
Unfortunately it seems that *gaia* has been deprecated. You could still try to install a previous version of it, or set up a new conda envi…
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