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101 follow
News: The Biostar Handbook. A bioinformatics e-book for beginners.
training handbook
updated 5 weeks ago by 1.8k • written 6.5 years ago by 98k
122
votes
42
replies
9.0k
views
21 follow
News: Help Make Biostar Better! Add Your Feedback, Opinions And Suggestions.
meta biostars
updated 3 months ago by 39k • written 10.5 years ago by 98k
81
votes
39
replies
6.2k
views
11 follow
News: State Of Biostar - Future Directions (January 2013)
biostars
updated 3 months ago by 39k • written 10.4 years ago by 98k
59
votes
31
replies
3.7k
views
12 follow
News: Example of how bioinformaticians can publish in Scientific Reports (by nature publishing group) using publicly available NGS data
publication NGS
updated 7 weeks ago by 39k • written 6.4 years ago by 9.9k
11
votes
25
replies
5.1k
views
15 follow
News: Questions for the NCBI Next Generation Sequencing Online Workshop Can be Posted with the NCBI_NOW Tag
NCBI_NOW
updated 8 weeks ago by 39k • written 7.7 years ago by ▴ 330
57
votes
24
replies
5.6k
views
14 follow
News: Join us in building a bioinformatics resource: The Biostar Handbook
biostar-handbook
updated 8 months ago by 39k • written 7.7 years ago by 98k
54
votes
24
replies
3.3k
views
12 follow
News: Big news from Microsoft. BASH on windows.
windows
updated 8 weeks ago by 39k • written 7.2 years ago by ★ 3.1k
24
votes
21
replies
6.1k
views
9 follow
News: Misunderstood parameter of NCBI BLAST
blast alignment
updated 6 days ago by 39k • written 4.7 years ago by ★ 3.4k
45
votes
19
replies
5.7k
views
8 follow
News: Gamestorming For Bioinformatics
gamestorming
updated 3 months ago by 39k • written 10.7 years ago by 27k
15
votes
18
replies
7.4k
views
6 follow
News: New Free Community Tutorial Website For Bioinformatics Learning
ChIP-seq genome snp RNA-seq
updated 3 months ago by 39k • written 9.9 years ago by ▴ 610
10
votes
17
replies
2.7k
views
7 follow
News: Tell us what you think of the ENA browser?
ena
updated 7 weeks ago by 39k • written 6.5 years ago by ★ 1.8k
51
votes
17
replies
3.3k
views
News: Biostars 3.0 is now under testing. It has groups, charms and other interesting features.
meta biostars
updated 3 months ago by 39k • written 8.2 years ago by 98k
12
votes
17
replies
3.4k
views
6 follow
News: A programming language for living cells [Cello]
dna sequence research language
updated 8 weeks ago by 39k • written 7.2 years ago by 11k
45
votes
16
replies
5.1k
views
12 follow
News: Google announces DeepVariant
genome deep-learning google
updated 14 days ago by 39k • written 5.5 years ago by ▴ 970
21
votes
16
replies
5.2k
views
6 follow
News: Pandora's Toolbox - a collection of bioinformatics programs
Assembly alignment RNA-Seq
updated 14 months ago by 39k • written 8.4 years ago by ★ 1.1k
11
votes
13
replies
2.5k
views
News: Ensembl datacentre shut-down: Friday 26th August - Tuesday 30th August 2016
Maintenance Ensembl
updated 7 weeks ago by 39k • written 6.8 years ago by ★ 2.2k
48
votes
13
replies
25k
views
10 follow
News: The New Grch38 Human Genome Browser Has Arrived!
ucsc assembly GRCh38 hg38
updated 16 months ago by 39k • written 9.2 years ago by 27k
6
votes
13
replies
1.5k
views
News: Ensembl reduced functionality: 10th March-16th April 2020
Ensembl VEP BLAT service News
9 months ago by Ben_Ensembl ★ 2.2k
14
votes
11
replies
2.4k
views
6 follow
News: Announcing bioSyntax: Syntax highlighting for biological files
computational-biology
updated 13 days ago by 39k • written 5.4 years ago by ▴ 170
18
votes
11
replies
3.5k
views
News: Full Genome Sequencing Service 30x whole human genome sequencing for $3,490 (project cancelled)
genome next-gen-sequencing
updated 17 months ago by 39k • written 8.7 years ago by ▴ 100
11
votes
11
replies
1.3k
views
8 follow
News: Python Data Visualization Course. Last 3 spots left
next-gen
updated 6 days ago by 39k • written 4.5 years ago by ★ 2.3k
21
votes
11
replies
8.9k
views
6 follow
News: NovaSeq from Illumina (updated info)
illumina NovaSeq
updated 6 weeks ago by 39k • written 6.4 years ago by 129k
7
votes
11
replies
1.6k
views
News: Bringing the power of Big Data to biomedical researchers
NGS biomedical-research
updated 16 days ago by 39k • written 5.8 years ago by ▴ 100
19
votes
11
replies
6.4k
views
News: Solid Software Tools: Denovo Assembly/Xsq Tools Pipeline Mirrored At Biostar
SOLID
updated 3 months ago by 39k • written 10.7 years ago by 98k
8
votes
10
replies
3.5k
views
News: New versions of Minia and DSK (2.0.x)
minia dsk assembly gatb
updated 13 months ago by 39k • written 8.3 years ago by ★ 1.5k
22
votes
10
replies
5.0k
views
News: samtools/bcftools/htslib 1.0 released
htslib samtools bcftools
updated 17 months ago by 39k • written 8.8 years ago by ★ 2.2k
9
votes
9
replies
6.9k
views
News: NovaSeq quality analysis
sequencing
updated 19 days ago by 39k • written 5.9 years ago by 18k
17
votes
9
replies
3.3k
views
News: My Ncbi Curriculum Vitae Web Application: Sciencv
ncbi
updated 3 months ago by 39k • written 9.7 years ago by 154k
6
votes
9
replies
3.7k
views
News: 1000 Genomes : The Initial Phase 3 variant list and phased genotypes.
1000genomes
updated 12 weeks ago by 39k • written 8.9 years ago by 154k
22
votes
9
replies
6.1k
views
News: Epigenetics Workshop - DNA Methylation Data Analysis
bisulfite-sequencing workshop epigenetics
updated 4 months ago by 39k • written 8.0 years ago by 9.9k
27
votes
9
replies
3.6k
views
News: OSX 10.11 released 30th Sep will be "rootless"
mac osx
updated 8 months ago by 39k • written 7.7 years ago by 13k
0
votes
9
replies
2.0k
views
News: Practical Genomics: From Biology to Biostatistics Workshop (Baltimore, MD)
workshop
updated 12 weeks ago by 39k • written 8.9 years ago by 10k
13
votes
9
replies
1.9k
views
News: Inviting NEW Biostars moderators to join Biostars slack channel
slack moderator
updated 8 days ago by 39k • written 5.0 years ago by 129k
12
votes
8
replies
6.5k
views
News: rRNA Depletion / Poly-A Selection Responsible for RNA-seq Bias
rRNA-depletion RNA-seq-bias
updated 12 weeks ago by 39k • written 8.9 years ago by ▴ 640
8
votes
8
replies
2.3k
views
News: Coronavirus Genome Analysis: a new volume in the Biostar Handbook
biostar handbook bioinformatics education News
written 3.2 years ago by 98k
12
votes
8
replies
3.0k
views
News: 'Potential Rna-Dna Binding Site In Alu Repeat', Or 'Why Should I Allow Multiple Mapping Positions When Analyzing Chipseq Data?'
chipseq rna
updated 3 months ago by 39k • written 9.9 years ago by 9.9k
7
votes
8
replies
1.5k
views
News: A new Stack Exchange site for Research Computing
unix linux
updated 14 days ago by 39k • written 5.5 years ago by ▴ 690
13
votes
8
replies
2.3k
views
News: NCBI is going to eliminate GI identifiers
ncbi GI
updated 8 weeks ago by 39k • written 7.2 years ago by ★ 2.9k
7
votes
8
replies
3.8k
views
News: Next-Gen Sequencing Tutorials On Cubelp (Cranfield Bioinformatics Electronic Learning Platform)
genome chip-seq snp assembly
updated 8 months ago by 39k • written 9.8 years ago by ▴ 610
6
votes
7
replies
3.0k
views
News: New in DiffBind: dba.plotProfile() - Peak profiles and profile heatmaps
DiffBind ChIP-seq deepTools visualization ATAC-seq
8 months ago by Rory Stark ★ 1.7k
12
votes
7
replies
3.4k
views
News: Welcome Ensembl REST with more endpoints!
ensembl rest-api
updated 11 weeks ago by 39k • written 8.6 years ago by ★ 5.2k
23
votes
7
replies
4.1k
views
News: Research accounts on GitHub
github git
updated 12 weeks ago by 39k • written 9.1 years ago by 154k
24
votes
7
replies
4.1k
views
News: #Bioinformatics Crowdcoding
crowd-coding
updated 3 months ago by 39k • written 9.9 years ago by 154k
6
votes
7
replies
4.9k
views
News: Illumina Nextseq 500 And Hiseq X Ten: Newer Tech Lowering Cost Per Mbp
Illumina
updated 3 months ago by 39k • written 9.4 years ago by ▴ 640
10
votes
7
replies
1.9k
views
News: Linux for Biologists e-book (free to read online)
linux python galaxy conda virtual-machine
20 months ago by vimalkvn ▴ 310
25
votes
7
replies
2.4k
views
6 follow
News: Who qualifies to be a bioinformatician?
resume bioinformatician vc
updated 11 months ago by 39k • written 8.1 years ago by 154k
17
votes
7
replies
8.6k
views
News: Upcoming NGS Workshop: A Beginner's Guide to NGS Data Analysis
workshop Assembly transcriptomics RNA-Seq
updated 14 months ago by 39k • written 8.5 years ago by 9.9k
25
votes
7
replies
5.8k
views
News: Pubmed Commons : A System That Enables Researchers To Share Their Opinions About Scientific Publications
ncbi pubmed
updated 3 months ago by 39k • written 9.6 years ago by 154k
10
votes
7
replies
2.0k
views
News: Free draft copy of book on bioinformatics tools
alignment Assembly RNA-seq next-gen
updated 4 months ago by 39k • written 8.0 years ago by ★ 1.1k
13
votes
7
replies
5.2k
views
News: Free HiSeq X Ten human genome fastq test data
HiSeq-X-Ten Human-genome Fastq next-gen
updated 17 months ago by 39k • written 8.8 years ago by ★ 1.8k
1,000 results • Page 1 of 20
Recent Votes
What ought to be the rate between methylated CpGs and CHX in RRBS ?
What ought to be the rate between methylated CpGs and CHX in RRBS ?
methylation coverage in the gene region
A: what's Validation stringency?
A: what's Validation stringency?
Comment: BioInformatics, Software
Answer: How to calculate kinship matrix table from vcf file
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Recent Replies
Answer: Single Cell Rna Seq Using BD Rhapsody by GenoMax 129k
See answer here: https://www.biostars.org/p/9562237/#9562240 I don't think you can do this on Galaxy.
Comment: how to run FacetsSuite wrapper scripts on command line by GenoMax 129k
The [link in your original post][1] has this bit of help --snp-pileup-path <path to snp-pileup executable> So the path you provide ne…
Comment: ggsave() bug in ggplot2? by barslmn ★ 1.5k
Can you run the command `file Figure1.jpg` and post the output?
Comment: PacBio Pipeline and Tools for Variant Call by Kiran ▴ 70
Hi William , Thank you for the explanation, From VCF should i omit variants with `"/"` and keep ones with phased `"|"` for further annotati…
Comment: My kernel is killing the pairtools dedup script, how to prevent that? by GenoMax 129k
Keep an eye on memory usage. Even though you have 256G it is possible that the process is running out of memory or temp (/tmp) space. Try r…
Answer: Understanding Used Assembly: Why aren't authors specific about patch version? by GenoMax 129k
You may have seen explanation of the patches from GRC --> ([**LINK**][1]). > The fact that patch-version does matter for looking up varian…
Comment: how to run FacetsSuite wrapper scripts on command line by Dalal • 0
I apologise for that. Unfortunately I am still left with the same error: > sh: 1: ~/mut_analysis/variant-calling/facets_cnv/: > Permission…
Comment: BioInformatics, Software by hashim.rana11 • 0
Thank you so much...
Comment: how to create correlation matrix R by satva72 • 0
great! thanks
Comment: BioInformatics, Software by barslmn ★ 1.5k
https://bio.tools/ is a great website indexing software used in bioinformatics.
Comment: BioInformatics, Software by Pierre Lindenbaum 154k
This is just too broad. what did you find so far ?
Answer: How to calculate kinship matrix table from vcf file by barslmn ★ 1.5k
You can use the vcftools relatedness2 module. Which implements the method describes in the paper: https://academic.oup.com/bioinformatics/a…
Answer: How to convert bed file to vcf? by Pierre Lindenbaum 154k
use AWK, change the header, body according to your needs... awk 'BEGIN {printf("##fileformat=VCFv4.2\n##INFO=<ID=END,Number=1,Type=I…
Comment: Doubt - installing LncTar software by Jeremiah • 0
It is the full result, there is only one lncRNA and one mRNA in Examp1, and the output file is just like web version reult
Comment: How to get a comperative result of 2 bed files? by Pierre Lindenbaum 154k
convert the bed to vcf and use truvari.
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