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News: BWA 0.7.11 is out, supports ALT contigs
BWA
updated 6 days ago by 38k • written 8.2 years ago by 103k
6
votes
0
replies
2.5k
views
News: New Methods Section In Plos Computational Biology
publications plos
updated 24 days ago by 38k • written 10.0 years ago by 18k
0
votes
0
replies
1.8k
views
News: Workshop: Analysis of Massively Parallel Sequencing (NGS) Data
NGS Data-Analysis
updated 5 days ago by 38k • written 8.2 years ago by ▴ 270
6
votes
0
replies
5.0k
views
News: Game Changer? Illumina Nextseq 500
illumina
updated 17 days ago by 38k • written 9.2 years ago by ★ 1.3k
10
votes
0
replies
2.7k
views
News: Cfp: Camda 2013 Challenge: Big Data In Life Sciences
ngs conference
updated 24 days ago by 38k • written 10.0 years ago by ▴ 240
1
vote
0
replies
1.7k
views
News: Gatk Workshop Oct 21-22 To Coincide With Ashg Conference
conference gatk
updated 20 days ago by 38k • written 9.6 years ago by ★ 1.2k
0
votes
0
replies
2.1k
views
News: Conference Announcement - Camda 2014
conference
updated 16 days ago by 38k • written 9.0 years ago by ▴ 240
0
votes
0
replies
4.6k
views
News: Bioinformatics Training Courses - Metagenomics and NGS data analysis - Sydney and Canberra, Australia
metagenomics training next-gen-sequencing
updated 13 days ago by 38k • written 8.8 years ago by 49k
0
votes
0
replies
1.8k
views
News: Dublin - Software Carpentry In The Cloud Bootcamp
python cloud
updated 26 days ago by 38k • written 10.6 years ago by 2.3k
5
votes
0
replies
2.8k
views
News: Penn State now offers an Online Graduate Certificate: Applied Bioinformatics
bioinformatics-education
updated 11 days ago by 38k • written 8.6 years ago by 96k
7
votes
0
replies
1.7k
views
News: Us Ethics Panel Reports On Dna Sequencing And Privacy
next-gen
updated 24 days ago by 38k • written 10.4 years ago by 11k
0
votes
0
replies
2.3k
views
News: Total RNA Commercial Kit Comparison Study
microarray NGS RNA-Seq qPCR
updated 10 days ago by 38k • written 8.3 years ago by ▴ 40
4
votes
0
replies
1.4k
views
News: Helen Berman Wins The 2013 Delano Award For Computational Biosciences
delano-award
updated 24 days ago by 38k • written 10.0 years ago by 18k
1
vote
0
replies
1.2k
views
News: Day 1 Highlights of SFAF 2014 Meeting
Sequencing
updated 13 days ago by 38k • written 8.8 years ago by ▴ 640
2
votes
0
replies
1.5k
views
News: Acute Myeloid Leukemia Outcome Prediction Challenge
prediction cancer
updated 13 days ago by 38k • written 8.8 years ago by 11k
6
votes
0
replies
2.5k
views
News: Broad Releases Fastg Multiple Seq Assembly Format
FASTG reference-format
updated 24 days ago by 38k • written 10.3 years ago by ★ 5.2k
1
vote
0
replies
4.0k
views
News: Hands-On Training in RNA-seq Bioinformatics: A Practical Introduction - Mapping, Visualization, Basic Analyses
next-gen RNA-Seq workshop
updated 13 days ago by 38k • written 8.8 years ago by 9.9k
1
vote
0
replies
127
views
News: Summer School in Bioinformatics
Genomics Docker RNA-seq
updated 3 days ago by 38k • written 3 days ago by ★ 2.3k
0
votes
0
replies
548
views
News: FINAL CALL :: Online Course - A Practical Introduction to NGS Data Analysis (July 14-16, 2021)
NGS workshop
updated 2 days ago by 38k • written 21 months ago by 9.9k
3
votes
0
replies
1.4k
views
News: Bioconductor Conference, July 31 - Aug 1, 2014, Boston
bioconductor
updated 13 days ago by 38k • written 8.8 years ago by 26k
1
vote
0
replies
1.2k
views
News: Galaxy Group At G+
galaxy
updated 23 days ago by 38k • written 9.8 years ago by ★ 1.3k
0
votes
0
replies
1.8k
views
News: MinION access program is open
minion
updated 10 days ago by 38k • written 8.4 years ago by 96k
2
votes
0
replies
3.0k
views
News: Short Course And Workshop On Rna-Seq Analysis
RNA-seq
updated 17 days ago by 38k • written 9.2 years ago by ▴ 60
4
votes
0
replies
2.7k
views
News: Wed 9/25 On-Line, Live Tutorial For Integrated Genome Browser
visualization ChIP-seq RNA-seq igv genome-browser
updated 19 days ago by 38k • written 9.5 years ago by ★ 2.3k
0
votes
0
replies
666
views
News: Managing single cell transcriptomics: Course at EMBL-EBI, July 3-5
single-cell RNA-Seq
updated 5 days ago by 38k • written 3.9 years ago by • 0
0
votes
0
replies
198
views
News: Introduction to GWAS course in June
GWAS R
updated 12 days ago by 38k • written 5 weeks ago by ★ 2.3k
1
vote
0
replies
1.6k
views
News: Gatk Workshop Survey
gatk
updated 27 days ago by 38k • written 10.8 years ago by ★ 1.2k
0
votes
0
replies
107
views
News: Environmental Metagenomics course
Environmental-Metagenomics
updated 11 days ago by 38k • written 11 days ago by ★ 2.3k
0
votes
0
replies
263
views
News: Course - Analysis of PROKARYOTIC PANGENOMES
Genomics Pangenomes
updated 27 days ago by 38k • written 29 days ago by ★ 2.3k
4
votes
0
replies
1.6k
views
News: Iscb Wikipedia Competition 2013
wikipedia
updated 20 days ago by 38k • written 9.6 years ago by ★ 2.0k
3
votes
0
replies
2.2k
views
News: Samtools/htslib/bcftools 1.1 released
htslib samtools
updated 11 days ago by 38k • written 8.5 years ago by 103k
2
votes
0
replies
4.7k
views
News: LAST CALL: Two days left to register for our workshop 'RNA-seq Bioinformatics: A Practical Introduction'
RNA-Seq workshop
updated 13 days ago by 38k • written 8.7 years ago by 9.9k
0
votes
0
replies
1.7k
views
News: Workshop: Programming For Evolutionary Biology (March 21St – April 6Th 2014)
ngs
updated 18 days ago by 38k • written 9.3 years ago by 9.9k
9
votes
0
replies
2.0k
views
News: Commercial advertising on Biostars
meta biostars advertising
updated 11 days ago by 38k • written 8.5 years ago by 96k
4
votes
0
replies
1.4k
views
News: $650M gift to Broad seeks to propel (Genomics based ) psychiatric research
sequencing
updated 13 days ago by 38k • written 8.7 years ago by ★ 5.2k
0
votes
0
replies
444
views
News: Live webinar (Feb 12 at 12PM Eastern): variant calling for bench scientists
variant-calling wgs wes
updated 5 days ago by 38k • written 3.1 years ago by • 0
1
vote
0
replies
148
views
News: Course - BIOINFORMATIC ANALYSIS OF TRANSPOSABLE ELEMENTS
Transposable-Elements TE Genome-Assembly
updated 3 days ago by 38k • written 7 days ago by ★ 2.3k
0
votes
0
replies
1.3k
views
News: Free Ensembl webinar
Ensembl
updated 10 days ago by 38k • written 8.4 years ago by 23k
2
votes
0
replies
3.3k
views
News: Bioinformatics Open Days 2Nd Edition - 14 And 15 Of March, 2013 At The University Of Minho, Campus Gualtar, Braga, Portugal.
conference
updated 24 days ago by 38k • written 10.2 years ago by ▴ 20
3
votes
0
replies
2.5k
views
News: SeqAhead - COST - Bioinformatics for Non-Coding RNAs: State-of-the-art Training Workshop: 30/6-3/7/2014, Athens, Greece
RNA-Seq workshop lncRNA microRNA
updated 13 days ago by 38k • written 8.8 years ago by ★ 1.3k
0
votes
0
replies
3.0k
views
News: sRNAbench: profiling of small RNAs and its sequence variants in single or multi-species high-throughput experiments
webserver isomiRs microRNA small-RNA
updated 10 days ago by 38k • written 8.4 years ago by 9.9k
4
votes
0
replies
2.2k
views
News: Upcoming Workshop: Ensembl Perl APIs
ensembl APIs Perl workshops
updated 10 days ago by 38k • written 8.4 years ago by ★ 5.2k
0
votes
0
replies
2.1k
views
News: Second Annual International Environmental Omics conference to be held in Liverpool, UK. September 15th-18th
Conference
updated 13 days ago by 38k • written 8.7 years ago by ★ 3.9k
2
votes
0
replies
2.1k
views
News: The 2nd Plant Genomics Congress London 12 & 13 May 2014
ngs plant-genomics plant-science
updated 13 days ago by 38k • written 8.9 years ago by ▴ 20
2
votes
0
replies
2.3k
views
News: Connecting NGS Researcher Directly to Data Analysis Provider: New Genohub Service Launched
NGS-data-analysis bioinformatics-services
updated 13 days ago by 38k • written 8.8 years ago by ▴ 640
1
vote
0
replies
187
views
News: Advanced Bayesian statistics in R course
Statistics RegressionModeling Bayesian R
17 days ago by carlopecoraro2 ★ 2.3k
0
votes
0
replies
2.5k
views
News: Call-for-Papers in Epigenomics (BMRI, impact factor 2.7)
epigenomics papers
updated 10 days ago by 38k • written 8.4 years ago by • 0
1
vote
0
replies
2.2k
views
News: APPLICATION DEADLINE IS DECEMBER 5 for Penn State Applied Bioinformatics Program – 100% Online
education courses online
updated 10 days ago by 38k • written 8.3 years ago by ▴ 10
4
votes
0
replies
2.1k
views
News: Rna-Seq Workshop In Oslo - Seats Available
RNA-seq
updated 17 days ago by 38k • written 9.1 years ago by ▴ 60
3
votes
0
replies
2.9k
views
News: Tumorportal - A Tool For Exploring A Pan-Cancer Dataset
tcga cancer-genomics
updated 16 days ago by 38k • written 9.1 years ago by 19k
152 results • Page 3 of 4
Recent Votes
Comment: Nextflow Stringtie: command not found Error
Answer: What is the difference between agilent_wholegenome and agilent_wholegenome_4x44k
C: Converting an output de-novo transcriptome assembled with Trinity to a .gff3 fil
unplaced, unlocalized, ... scaffolds from hg19 to GRCh38
C: extracting heterozygous snp from a vcf file
Comment: March 13-16: Virtual Nextflow and nf-core training event in 5 languages
Answer: Where do find virulence gene information in a gff/gtf file?
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Popular Question to santos48 ▴ 40
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Recent Replies
Answer: samtools idxstats not removing ChrM by Pierre Lindenbaum 153k
You mitochondrial genome is named `MT` not `chrM`...
Answer: samtools idxstats not removing ChrM by Jen ▴ 40
![enter image description here][1] I think I got it to work using "MT" rather than "ChrM" (code below) samtools idxstats chipse…
Answer: how to get pfam id of proteins belonging to a particular family along with seque by GenoMax 126k
Visit: https://www.uniprot.org/uniprotkb?query=(taxonomy_id:9606) Click on `customize columns`. Search with keyword `pfam` and check the…
Comment: how to get pfam id of proteins belonging to a particular family along with seque by Pierre Lindenbaum 153k
use the data in the download section ? $ wget -qO - "https://ftp.ebi.ac.uk/pub/databases/interpro/current_release/protein2ipr.dat.gz" …
Comment: Problem in converting SAM to BAM file by DROP SEQ by benformatics 3.4k
i think picard is expecting read groups. you may need to add them: https://gatk.broadinstitute.org/hc/en-us/articles/360037226472-AddOrRepl…
Comment: samtools idxstats not removing ChrM by benformatics 3.4k
i'm not sure this is doing what you expect? you should try filtering your bam directly and then running idx stats samtools view -h yo…
Comment: samtools idxstats not removing ChrM by Jeremy Leipzig 21k
can we see the output from this? `samtools idxstats chipseq/results/bowtie2/PPARg/PPARg_Input_Rep1_aln_sorted.bam` conversely just as an e…
Comment: Nextflow Stringtie: command not found Error by ATpoint 70k
It's bad practice to delete posts that received an answer ( = a user invested time - in this case me but it of course applies generally). D…
Comment: Converting an output de-novo transcriptome assembled with Trinity to a .gff3 fil by EkHe • 0
Hi @juke34, if you're able, can you please clarify something for me (based on the answer you've given here)? Thanks a lot in advance. I als…
Answer: Practical Haplotype Graph -- Pathing Error by lcj34 ▴ 220
FYI - The latest PHG docker version (tag 1.4) has a fix for this issue.
Comment: Nextflow: No space left on device, process using output directory as input? by Maxime Garcia ▴ 220
Nextflow should only link inputs (unless stated otherwise), so even if you use outdir as input it should not be much of an issue, but still…
Comment: Problem in converting SAM to BAM file by DROP SEQ by lieven.sterck 14k
Hi https://www.biostars.org/u/126271/, welcome. it might be good to add some more info on your "question". Now it only shows an error mes…
Comment: Trying to install Roary with Conda results in error message by tobiwan • 0
Thank you for your answer I'm using Ubuntu 22.04.2 LTS, command line used: conda install roary. Or do you need a screenshot of the whole …
Comment: Nextflow: No space left on device, process using output directory as input? by colindaven 4.5k
Yes, don't use the outdir as an input. You might get infinite loops.
Comment: UnicodeDecodeError: 'utf-8' codec can't decode byte 0x8b in position 1: invalid by wangjincheng • 0
I tried unzipped file, it shows the same error
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