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News: FINAL CALL - Single-Cell RNA-Seq Data Analysis: A Practical Introduction (May 6-8, 2024 in Berlin)
single-cell sequencing
14 days ago by David Langenberger 11k
12
votes
2
replies
423
views
News: 8th Berlin Summer School in NGS Data Analysis (June 10-14, 2024) - already half booked
Workshop RNA-Seq DNA-Seq Illumina
9 days ago by David Langenberger 11k
3
votes
2
replies
539
views
News: Announcement: Research Topic "Mechanistic, Machine Learning and Hybrid Models of the 'Other' Endocrine Regulatory Systems in Health and Disease", Vol…
mathematical-modelling endocrinology ML systems-biology machine-learning
21 days ago by Johannes W. Dietrich • 0
0
votes
0
replies
151
views
News: Online course: Introduction to GWAS
GWAS Imputation StatisticalPower
26 days ago by carlopecoraro2 ★ 2.5k
2
votes
0
replies
105
views
News: Course Functional Programming with R
Rstats TScourses Rproject KeepLearning Rlang
9 days ago by Transmitting Science communication ▴ 70
0
votes
0
replies
105
views
News: Online course: Multivariate Data Analysis with R and vegan
Multivariate-Statistics vegan R
updated 11 days ago by 43k • written 11 days ago by ★ 2.5k
0
votes
0
replies
131
views
News: Online course: Food Traceability Using Genomic Tools
Nanopore Genomic-Tools Illumina Food-Traceability
updated 16 days ago by 43k • written 16 days ago by ★ 2.5k
2
votes
0
replies
108
views
News: Online Course Introduction to Network Analysis and Modelling
Python Network-Analysis
updated 8 days ago by 43k • written 8 days ago by ▴ 70
0
votes
0
replies
131
views
News: Course - Agent-Based Modelling Using NetLogo - University of Lodz, Poland
Netlogo Individual-Based-Models Agent-Based-Models
updated 1 day ago by 43k • written 1 day ago by ★ 2.5k
1
vote
0
replies
162
views
News: Landscape Genomics course in Switzerland
LFMM Landscape-Genomics Sambada R Local-Adaptation
updated 11 days ago by 43k • written 13 days ago by ★ 2.5k
0
votes
0
replies
137
views
News: Online course: Eukaryotic Metabarcoding
Metabarcoding Biodiversity R eDNA
18 days ago by carlopecoraro2 ★ 2.5k
0
votes
0
replies
156
views
News: Final Call - Bioinformatics Pipeline Development with Nextflow (May 27-29, 2024)
workshop RNA-seq nextflow DNA-seq
updated 3 days ago by 43k • written 3 days ago by 11k
1
vote
0
replies
120
views
News: Online Live Course: Introduction to Machine Learning in R
Rstats TScourses Rlang Rproject
updated 8 days ago by 43k • written 8 days ago by ▴ 70
0
votes
0
replies
157
views
News: Online course: Network Analysis in R
NetworkAnalyis R
5 days ago by carlopecoraro2 ★ 2.5k
0
votes
0
replies
172
views
News: Online course: Meta-analysis in R
Meta-Analysis R
updated 8 days ago by 43k • written 8 days ago by ★ 2.5k
0
votes
0
replies
129
views
News: Online course: Meta-analysis in R
Meta-Analysis Statistics R
updated 1 day ago by 43k • written 1 day ago by ★ 2.5k
2
votes
0
replies
113
views
News: Online Course Generalised Additive Mixed Models (GAMM): modelling space-time correlation structures
GAMM Rlang Rstats Rproject
updated 8 days ago by 43k • written 8 days ago by ▴ 70
0
votes
0
replies
126
views
News: Deadline Approaching: PETs for Public Health Challenge
privacy public-health-challenge
updated 4 days ago by 43k • written 4 days ago by ▴ 380
2
votes
0
replies
106
views
News: Online course: Genome Annotation
Genome-Assembly RNA-seq Genome-Annotation
updated 10 days ago by 43k • written 10 days ago by ★ 2.5k
0
votes
0
replies
186
views
News: Online course: Reproducibility in Bioinformatics
Singularity Version-Control Docker Containers
updated 22 days ago by 43k • written 22 days ago by ★ 2.5k
0
votes
0
replies
154
views
News: Online course: Analysis of Prokaryotic Pangenomes (Last call)
Prokaryotic Bacterial-Genomics Pangenomics
updated 22 days ago by 43k • written 22 days ago by ★ 2.5k
21 results • Page 1 of 1
Recent Votes
what's the genomic location and name of gene responsible for orange and black patches in calico cats
Comment: featureCounts --primary tag counting uniquely mapped reads and excludes multi-ma
Answer: Duplicate marking, read names, and the SRA
Comment: Installing/switching between versions of R/Rstudio/Bioconductor
Comment: Installing/switching between versions of R/Rstudio/Bioconductor
Comment: Installing/switching between versions of R/Rstudio/Bioconductor
Answer: Cellranger count error: Input FASTQ file ended prematurely
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Recent Replies
Comment: what's the genomic location and name of gene responsible for orange and black pa by Matthias Zepper 4.5k
It is not entirely off, but evidently also not correct. Melanin biosynthesis is a multistep process, that indeed prominently involves the…
Comment: Installing/switching between versions of R/Rstudio/Bioconductor on personal mach by Ram 43k
> so a single Rscript could utilise multiple environments and versions How is that sane, let alone "better"? Also, why use `snap` for curl…
Comment: how to find genes that are significantly expressed in brain cortex samples by Ram 43k
Normalized how?
Comment: Duplicate marking, read names, and the SRA by GenoMax 141k
With public data one has to work with what is there. If the information about position is absent then only thing that could be done is to l…
Comment: Installing/switching between versions of R/Rstudio/Bioconductor on personal mach by BioinfGuru ★ 1.7k
Or better yet. To have an R package that allows access to conda environments via "conda list env" so that environments can be switched with…
Comment: what's the genomic location and name of gene responsible for orange and black pa by GenoMax 141k
If GPT is right then it says that: > The specific gene responsible for the orange and non-orange (black or > gray) fur colors in cats is t…
Comment: what's the genomic location and name of gene responsible for orange and black pa by Jean-Karim Heriche 27k
As far as I know the Orange locus hasn't been mapped to a gene. Maybe this paper will help in narrowing the search: https://www.ncbi.nlm.ni…
Comment: Duplicate marking, read names, and the SRA by Luka • 0
>Curios if there a reference for this? [Apparently it's not deprecated yet][1], but will be soon and the SRA intends for it to be at some …
Comment: Installing/switching between versions of R/Rstudio/Bioconductor on personal mach by Ram 43k
I prefer RStudio for new projects as well. The moment I need versions though, RStudio becomes a burden. I wish one could launch RStudio fro…
Comment: what's the genomic location and name of gene responsible for orange and black pa by GenoMax 141k
According to ChatGPT: The gene responsible for the orange and black patches of fur in calico cats (and tortoiseshell cats) is the X-linked …
Comment: Installing/switching between versions of R/Rstudio/Bioconductor on personal mach by BioinfGuru ★ 1.7k
Certainly true. Switching versions is way simpler that way, at the cost of the familiarity of the Rstudio IDE - especially if the code is w…
Comment: Duplicate marking, read names, and the SRA by GenoMax 141k
> fastq-dump is deprecated Curios if there a reference for this? `fasterq-dump` seems to allow for parallel streams but `fastq-dump` is st…
Comment: Duplicate marking, read names, and the SRA by Luka • 0
>In many cases those remain recoverable using the -F option when you dump the data (cloud download not required) The -F option (or any equ…
Answer: Duplicate marking, read names, and the SRA by GenoMax 141k
To be specific, not every dataset in SRA loses the original identifiers. In many cases those remain recoverable using the `-F` option when …
Comment: Installing/switching between versions of R/Rstudio/Bioconductor on personal mach by Ram 43k
To use different versions of R and bioconductor, you don't really need RStudio. One can simply create new conda environments with the requi…
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