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News: Misunderstood parameter of NCBI BLAST
blast alignment
updated 2 days ago by 39k • written 4.7 years ago by ★ 3.4k
11
votes
11
replies
1.3k
views
8 follow
News: Python Data Visualization Course. Last 3 spots left
next-gen
updated 2 days ago by 39k • written 4.5 years ago by ★ 2.3k
13
votes
9
replies
1.9k
views
News: Inviting NEW Biostars moderators to join Biostars slack channel
slack moderator
updated 4 days ago by 39k • written 5.0 years ago by 129k
2
votes
7
replies
1.4k
views
News: Beyond pest control: What can we learn from parasites?
docking heme parasitism in-silico
updated 1 day ago by 39k • written 4.2 years ago by 52k
2
votes
7
replies
1.4k
views
News: Bioinformatics workshop or training courses
RNA-Seq next-gen ChIP-Seq
updated 3 days ago by 39k • written 4.8 years ago by ▴ 140
8
votes
6
replies
1.2k
views
News: Illumina to Acquire Pacific Biosciences
pacbio illumina
updated 2 days ago by 39k • written 4.6 years ago by 98k
0
votes
5
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1.4k
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News: LAST CALL - 'Introduction to NGS Data Analysis' course in Berlin, October 8-10 2018
NGS training RNA-Seq DNA-Seq
updated 3 days ago by 39k • written 5.0 years ago by 9.9k
12
votes
4
replies
1.7k
views
News: #NGSchool2018 summer school in bioinformatics
NGSchool Personalised-Medicine Nanopore
updated 4 days ago by 39k • written 5.0 years ago by ▴ 290
1
vote
4
replies
1.8k
views
News: webserver of TCGA data www.tcgaportal.org
genome RNA-Seq TCGA gene
updated 4 days ago by 39k • written 5.0 years ago by ▴ 40
10
votes
4
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1.5k
views
News: 3rd Berlin Summer School in NGS Data Analysis (2 seats just became available)
NGS RNA-Seq DNA-Seq
updated 1 day ago by 39k • written 4.4 years ago by 9.9k
4
votes
4
replies
1.6k
views
News: 12th International Conference on Advancements in Bioinformatics and Drug Discovery
genome Computational-Biology
updated 5 days ago by 39k • written 5.1 years ago by ▴ 20
14
votes
3
replies
3.4k
views
News: Updated: Conference/Symposium/Seminar/Workshop alert 2018-2019
seminar symposium conference
updated 4 days ago by 39k • written 5.0 years ago by 5.7k
4
votes
3
replies
2.7k
views
News: -max_target_seqs 1 in NCBI standalone BLAST does not do what you think it does
blast
updated 2 days ago by 39k • written 4.6 years ago by 11k
0
votes
3
replies
834
views
News: EMBO | EMBL Symposium: Seeing is Believing - Imaging the Molecular Processes of Life
image-analysis
updated 2 days ago by 39k • written 4.6 years ago by • 0
5
votes
3
replies
1.3k
views
News: Top GitHub repos for biomedicine
open-source software GitHub
updated 1 day ago by 39k • written 4.4 years ago by ▴ 50
2
votes
3
replies
1.2k
views
News: Bio-On-Magnetic-Beads (BOMB): Open platform for high-throughput nucleic acid extraction and manipulation
rna-extraction dna-extraction rna-seq
updated 3 days ago by 39k • written 4.7 years ago by ▴ 20
1
vote
2
replies
1.2k
views
News: Webinar on Diagnosis of Rare Diseases using NGS Based Multi-gene Testing- Case studies by Dr.Aparna Ganapathy on 18 Apr 2018
variant-calling rare-disease dna-seq strand-ngs
updated 5 days ago by 39k • written 5.2 years ago by ▴ 70
2
votes
2
replies
1.2k
views
News: GeNets: a unified web platform for network-based genomic analyses
networks pathways RNA-Seq visualization
updated 3 days ago by 39k • written 4.9 years ago by ★ 5.2k
3
votes
2
replies
1.0k
views
News: Course "Data Crunching: from hell to heaven", Udine, Italy, 25-27 July, 2018
NGS next-generation-sequencing
updated 4 days ago by 39k • written 5.0 years ago by ★ 3.0k
2
votes
2
replies
1.4k
views
News: User-friendly Bioinformatics From RNA Seq to Biological Interpretation
machine-learning RNA-seq
updated 3 days ago by 39k • written 4.8 years ago by ▴ 10
5
votes
2
replies
1.4k
views
News: #scRNABIO & organoids meeting
single-cell-sequencing microfluidics organoids
updated 3 days ago by 39k • written 4.8 years ago by ▴ 320
6
votes
2
replies
898
views
News: Temporarily reduced functionality of Ensembl and Ensembl Genomes
Ensembl
updated 1 day ago by 39k • written 4.3 years ago by ★ 2.2k
3
votes
2
replies
267
views
News: Participate in a NCBI/NIAID Virtual Codeathon: VCF Files for Population Genomics, Jul 31 - Aug 4, 2023
VCF SARS-CoV-2 NCBI Codeathon
2 days ago by PeterC_NCBI ▴ 260
3
votes
2
replies
852
views
News: BETA Testing Opportunity for new RNA-seq data analysis tool
beta-testing RNA-seq multi-omics ngs
updated 1 day ago by 39k • written 4.4 years ago by • 0
1
vote
2
replies
886
views
News: Sage Bionetworks is seeking researchers and data scientists to participate in software user research!
research software
updated 1 day ago by 39k • written 4.3 years ago by ▴ 30
5
votes
2
replies
1.3k
views
News: Google Dataset Search
google
updated 3 days ago by 39k • written 4.7 years ago by 154k
0
votes
1
reply
995
views
News: Registration deadline: Comparative genomics
snp SVs
updated 3 days ago by 39k • written 4.7 years ago by ★ 2.3k
1
vote
1
reply
845
views
News: Conference news: Final list of speakers for DataTech19, Scotland's data science conference
python data-science R hpc
updated 1 day ago by 39k • written 4.3 years ago by ▴ 20
4
votes
1
reply
1.6k
views
News: scRNA-seq data analysis Workshop in Berlin
RNA-Seq next-gen
updated 2 days ago by 39k • written 4.5 years ago by ★ 2.3k
3
votes
1
reply
806
views
News: Results are now available for the precisionFDA NCI-CPTAC Multi-omics Enabled Sample Mislabeling Correction Challenge!
precisionFDA NCI challenge algorithm multi-omics
updated 1 day ago by 39k • written 4.3 years ago by ▴ 60
0
votes
1
reply
838
views
News: Genomic bioinformatics service provider
next-gen-sequencing genome RNA-Seq ChIP-Seq
updated 2 days ago by 39k • written 4.5 years ago by • 0
3
votes
1
reply
945
views
News: Results are now available for the precisionFDA CDRH Biothreat Challenge!
NGS metagenomics FDA biothreat
updated 1 day ago by 39k • written 4.3 years ago by ▴ 60
0
votes
1
reply
668
views
News: Advanced R Programming Course
R
updated 5 days ago by 39k • written 5.1 years ago by ★ 2.3k
0
votes
1
reply
883
views
News: Help GIAB manually curate benchmark SVs!
giab
updated 4 days ago by 39k • written 5.0 years ago by 154k
0
votes
1
reply
1.1k
views
News: Squeezing biology out of statistics: Gene set and pathway analysis in HT data. Berlin, 11-15 March
R RNA-Seq next-gen ChIP-Seq
updated 1 day ago by 39k • written 4.4 years ago by ★ 2.3k
5
votes
1
reply
1.3k
views
News: 2-day WORKSHOP on SNAKEMAKE
next-gen
updated 3 days ago by 39k • written 4.9 years ago by ★ 2.3k
1
vote
1
reply
1.1k
views
News: New International MScProgram: Data Science and Information Technologies (DSIT) from the University of Athens [New Application Deadline 6 Aug 18]
studies data-science
updated 3 days ago by 39k • written 4.9 years ago by ★ 1.3k
0
votes
1
reply
816
views
News: Data visualization with Python
snp next-gen sequencing
updated 2 days ago by 39k • written 4.6 years ago by ★ 2.3k
2
votes
1
reply
751
views
News: Gene set enrichment and pathway analysis in HT data
next-gen-sequencing RNA-Seq
updated 1 day ago by 39k • written 4.3 years ago by ★ 2.3k
2
votes
1
reply
955
views
News: PrecisionFDA and NCI-CPTAC Mislabeling Challenge is Launching on September 24th!
precision-medicine NCI FDA proteomics.RNA
updated 3 days ago by 39k • written 4.7 years ago by ▴ 150
0
votes
1
reply
2.2k
views
News: Hands-on training in Bioinformatics and Biomedical Data Science
NGS training
updated 2 days ago by 39k • written 4.7 years ago by ▴ 10
1
vote
1
reply
1.5k
views
News: 2nd Berlin Summer School in NGS Data Analysis 2018
DNA-Seq Workshop NGS RNA-Seq
updated 5 days ago by 39k • written 5.2 years ago by 9.9k
1
vote
0
replies
930
views
News: DataTech19 submission deadline and keynotes: Jared Lander, Mine Cetinkaya-Rundel, Debbie Bard
R data-science HPC python conference
updated 2 days ago by 39k • written 4.5 years ago by ▴ 20
0
votes
0
replies
982
views
News: Training in Computational Drug Design and Discovery @NIH,USA, April 9-12,2019
biomedical drug-design training genomics RNA-Seq
updated 1 day ago by 39k • written 4.3 years ago by ▴ 130
1
vote
0
replies
838
views
News: NCBI Webinar: New Variation Services for Normalizing, Remapping, and Annotating Variants
Variation dbsnp API SPDI Clinvar
updated 1 day ago by 39k • written 4.4 years ago by ▴ 70
0
votes
0
replies
942
views
News: SBCADD 2019 : 11th National Symposium Cum Workshop on Recent Trends in Structural Bioinformatics and Computer Aided Drug Design
Conference
updated 2 days ago by 39k • written 4.5 years ago by • 0
0
votes
0
replies
1.2k
views
News: Hackathon on how to use biodata to improve health outcomes
disease drugs genomics open-targets
updated 4 days ago by 39k • written 5.0 years ago by ★ 5.2k
0
votes
0
replies
1.9k
views
News: Introduction to Machine Learning Workshop
Machine-Learning Big-Data Python
updated 1 day ago by 39k • written 4.4 years ago by ★ 2.3k
3
votes
0
replies
1.2k
views
News: NIH Strategic Plan for Data Science
nih data-science
updated 5 days ago by 39k • written 5.2 years ago by 129k
2
votes
0
replies
2.6k
views
News: 2nd Edition of the Biostar Handbook. New online course starts now.
biostar-handbook
updated 1 day ago by 39k • written 4.3 years ago by 98k
232 results • Page 1 of 5
Recent Votes
Answer: IGV displays genomic coordinates in a 1-based system or 0-based?
RNAseq expression data log2 transformed has negative values.
Samtools: "Too Many Open Files"
Filtering bad quality probes in illumina microarray data
gene filtering for agilent microarray using Limma
A: Identification Of Significant Differences Between Phylogentic Trees Using Distan
A: How to filter vcf file on minimum genotype depth and quality for each sample
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Recent Awards • All
Popular Question to Sam ▴ 150
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Recent Replies
Answer: Counting intronic reads in bulk RNA-seq by swbarnes2 13k
Are you sure this is appropriate for bulk RNASeq? I thought intronic reads for single cell were only counted in nuclear preps.
Answer: Single cell chemistry by swbarnes2 13k
Are you sure these samples are 10x? How likey is it that the sequencing group messed up and ran the samples wrongly?
Comment: How to deal with duplicated gene IDs in TCGA RNA expression data? by Vincent Laufer ★ 2.8k
are they distinct transcript IDs but the same gene ID? can you provide any additional context?
Comment: SyntaxError (Perhaps you forgot a comma?) in snakefile when running FastQC. by Dhatri Badri • 0
that didn't work either
Answer: Why are some WES VCFs larger than others? by Vincent Laufer ★ 2.8k
Hi @kermit and prash (and others)! Nice discussion. I wanted to offer some **biological rationales** in addition to the technical reasons …
Answer: SyntaxError (Perhaps you forgot a comma?) in snakefile when running FastQC. by WouterDeCoster 47k
There is no `:` after `rule fastqc`
Comment: SyntaxError (Perhaps you forgot a comma?) in snakefile when running FastQC. by Dhatri Badri • 0
sorry that was a typo while i was copying my code! I still get the same error
Comment: too many zeros in 16S rRNA amplicon sequencing data by andres.firrincieli 3.3k
You have too many ASV (40k) and I think this is a problem related to the denoising (DADA2) of NovaSeq 6000 sequencing data. Maybe this post…
Answer: SyntaxError (Perhaps you forgot a comma?) in snakefile when running FastQC. by Pierre Lindenbaum 154k
> fastq.gz". what is the dot after `fastq.gz" ` ?
Comment: DownsampleSam by Pierre Lindenbaum 154k
1) I think this is just a warning 2) there must be another error displayed 3) look at samtools view --subsample 4) don't use loops but use…
Comment: ABySS genome assembler by npavliukovec • 0
Hello, yes, I tried it, but I have to do my home work on university's remote computer, unfortunatelly I go an error, when I try to use abys…
Comment: desgin a primer for CDS by yuxiang • 0
how can you know the primer is not bind to other gene site? how can you desgin an experiment? I use the FISH to identify the gene, how abo…
Comment: desgin a primer for CDS by yuxiang • 0
sorry for my late reply, I am a student, my profossor ask me to dsgin a primer for the specific cDNA, I have solved now, thanks for your re…
Comment: vg: Mapping fewer reads to a genome graph than a linear reference by samuel.a.odonnell ▴ 470
In this case filtering for quality might help correct for this overattributing feature?
Comment: ABySS genome assembler by GenoMax 129k
Did you see this guidance from ABySS manual: https://github.com/bcgsc/abyss#optimizing-the-parameters-k-and-kc
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