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News: Bioinformatics Contest 2018
contest
updated 11 months ago by 43k • written 6.3 years ago by ▴ 40
0
votes
1
reply
2.4k
views
News: Hands-on training in Bioinformatics and Biomedical Data Science
NGS training
updated 10 months ago by 43k • written 5.6 years ago by ▴ 10
0
votes
1
reply
1.3k
views
News: Squeezing biology out of statistics: Gene set and pathway analysis in HT data. Berlin, 11-15 March
R RNA-Seq next-gen ChIP-Seq
updated 10 months ago by 43k • written 5.3 years ago by ★ 2.5k
3
votes
1
reply
831
views
News: PrecisionFDA has won a FedHealth IT award!!
platform cloud-based precision-medicine award
updated 10 months ago by 43k • written 4.9 years ago by ▴ 150
3
votes
1
reply
1.3k
views
News: GATK returns to a fully open-source license
gatk
updated 11 months ago by 43k • written 6.9 years ago by 100k
5
votes
1
reply
1.6k
views
News: 2-day WORKSHOP on SNAKEMAKE
next-gen
updated 10 months ago by 43k • written 5.8 years ago by ★ 2.5k
0
votes
1
reply
606
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News: Bioinformatics Training Program
next-gen-sequencing genome RNA-Seq
updated 10 months ago by 43k • written 4.8 years ago by • 0
1
vote
1
reply
928
views
News: Webinar on Extensive Assessment of Gene Fusion Detection, Prioritization, Annotation and Characterization on 11 March 2020
detection webinar RNA-Seq gene-fusion
updated 10 months ago by 43k • written 4.2 years ago by ▴ 40
0
votes
1
reply
359
views
News: Online Course - Genomic Prediction
Genomic-Prediction Selective-Breeding
updated 3 months ago by 43k • written 3 months ago by ★ 2.5k
1
vote
1
reply
1.7k
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News: Bioinformatics for Beginners @NIH, (Bethesda, MD, USA) Feb 13 - 16, 2018
beginners training
updated 11 months ago by 43k • written 6.5 years ago by ▴ 140
0
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1
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1.5k
views
News: Symposium, Accelerating Biology 9-11, Jan, 2018 : Digitizing Life, Pune, India
symposium NGS
updated 11 months ago by 43k • written 6.5 years ago by 5.8k
3
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1
reply
2.3k
views
News: NCBI : New API Keys for the E-utilities
pubmed eutils ncbi api
updated 11 months ago by 43k • written 6.5 years ago by 161k
2
votes
1
reply
1.6k
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News: BIOSG17 Workshop on High Throughput Computing in Bioinformatics/Biomedicine using OSG
Workshop OSG Biomedicine HTC
updated 11 months ago by 43k • written 6.7 years ago by ▴ 10
2
votes
1
reply
1.4k
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News: of the Galaxy: 17.05 Release, Galaxy Community Conference, and more
event galaxy paper
updated 11 months ago by 43k • written 6.9 years ago by ▴ 610
4
votes
1
reply
1.2k
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News: Bioinformatics Workflows with Nextflow
Netflow reproducibility Workflows
updated 10 months ago by 43k • written 4.3 years ago by ★ 2.5k
0
votes
1
reply
2.3k
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News: Webinar on Unique Molecular Identifier (UMI)-powered Ultra-sensitive Variant Calling using Strand NGS - Case Study
Strand-NGS NGS RNA-Seq UMI dna-seq
updated 11 months ago by 43k • written 6.4 years ago by ▴ 70
0
votes
1
reply
1.1k
views
News: Registration deadline: Comparative genomics
snp SVs
updated 10 months ago by 43k • written 5.6 years ago by ★ 2.5k
0
votes
1
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791
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News: LAST CALL: Online Course - A Practical Introduction to NGS Data Analysis (February 28 - March 1, 2024)
NGS Online-Workshop
updated 3 months ago by 43k • written 3 months ago by 11k
1
vote
1
reply
1.3k
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News: Ensembl Perl API course, April 2018
course api ensembl perl training
updated 11 months ago by 43k • written 6.3 years ago by 23k
1
vote
0
replies
829
views
News: Ensembl launches COVID-19 resource
genome coronavirus COVID-19 ensembl SARS-CoV-2
updated 10 months ago by 43k • written 3.9 years ago by ▴ 330
0
votes
0
replies
406
views
News: Course - Metabolomics in R/Bioconductor
R Data-Analysis Metabolomics Bioconductor
updated 6 months ago by 43k • written 6 months ago by ★ 2.5k
0
votes
0
replies
659
views
News: Comparative Genomics Workshop . registration deadline
assembly Pacbio
updated 10 months ago by 43k • written 4.6 years ago by ★ 2.5k
2
votes
0
replies
719
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News: Speciation Genomics course in Canada (September 2019)
R SNP next-gen
updated 10 months ago by 43k • written 4.8 years ago by ★ 2.5k
0
votes
0
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1.3k
views
News: Training in Molecular Modeling and Molecular Dynamics @NIH, USA, June 26-29, 2018
cloud-computing molecular-dynamics modeling
updated 11 months ago by 43k • written 5.9 years ago by ▴ 140
0
votes
0
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345
views
News: Virtual de novo RNA-seq (transcriptomics) Workshop: November 13-16, 2023
workshop RNA-seq transcriptomics
updated 5 months ago by 43k • written 5 months ago by ▴ 10
0
votes
0
replies
233
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News: 3rd edition of the Winter School in Bioinformatics - Online February 26 - March 1
genomics reproducibility phylogenomics transcriptomics
3 months ago by carlopecoraro2 ★ 2.5k
0
votes
0
replies
667
views
News: Training in NCBI Resources for Biomedical Researchers @NIH
Resources NCBI Biomedical Researchers Programming
updated 10 months ago by 43k • written 4.1 years ago by ▴ 140
0
votes
0
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388
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News: Course - Network Analysis in Systems Biology with R/Bioconductor
R Network-Analysis Bioconductor Systems-Biology
updated 11 months ago by 43k • written 11 months ago by ★ 2.5k
0
votes
0
replies
342
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News: Course: Data Manipulation and Visualisation with Python
Python Data-Visualization Data-Manipulation
updated 7 months ago by 43k • written 7 months ago by ★ 2.5k
0
votes
0
replies
1.6k
views
News: Registration deadline for 2017 CBW bioinformatics workshops is fast approaching
SNP ChIP-Seq Assembly RNA-Seq R
updated 11 months ago by 43k • written 7.1 years ago by ▴ 30
0
votes
0
replies
433
views
News: 2-day Course on Introduction to Nextflow
Workflow Reproducibility Nextflow
updated 9 months ago by 43k • written 9 months ago by ★ 2.5k
1
vote
0
replies
1.1k
views
News: DataTech19 submission deadline and keynotes: Jared Lander, Mine Cetinkaya-Rundel, Debbie Bard
R data-science HPC python conference
updated 10 months ago by 43k • written 5.4 years ago by ▴ 20
0
votes
0
replies
703
views
News: IITM-EBI modelling workshop
ebi iit-madras biomodelling
updated 10 months ago by 43k • written 4.5 years ago by ▴ 10
2
votes
0
replies
1.5k
views
News: UCSC Genome Browser JSON API
ucsc json api
updated 10 months ago by 43k • written 4.8 years ago by 161k
0
votes
0
replies
838
views
News: Training in Cloud Computing For Biomedical Researchers@NIH
cloud-computing RNA-Seq next-gen biology
updated 10 months ago by 43k • written 5.1 years ago by ▴ 140
0
votes
0
replies
995
views
News: Paleogenomics course in Berlin
next-gen-sequencing aDNA
updated 10 months ago by 43k • written 5.1 years ago by ★ 2.5k
1
vote
0
replies
494
views
News: Course - Introduction to Deep Learning for biologists
Genomics Deep-Learning Python NGS
updated 10 months ago by 43k • written 10 months ago by ★ 2.5k
0
votes
0
replies
744
views
News: Epigenomics Workshop in Berlin (28th May-1st June 2018)
genome sequence RNA-Seq ChIP-Seq
updated 11 months ago by 43k • written 6.0 years ago by ★ 2.5k
0
votes
0
replies
683
views
News: Training in Variant Analysis @NIH,August 20-23
genotype next-gen biomedical
updated 10 months ago by 43k • written 4.8 years ago by ▴ 140
0
votes
0
replies
692
views
News: Interested in Paleogenomics?
genome
updated 10 months ago by 43k • written 5.0 years ago by ★ 2.5k
0
votes
0
replies
429
views
News: Course - Phylogenetic Comparative Methods in R
Comparative-Methods R Phylogenetics
updated 11 months ago by 43k • written 11 months ago by ★ 2.5k
0
votes
0
replies
2.0k
views
News: Workshop: RADseq data analysis in Berlin
next-gen genome SNP
updated 11 months ago by 43k • written 6.9 years ago by ★ 2.5k
0
votes
0
replies
1.3k
views
News: Course: Gene set enrichment and pathway analysis in R . Berlin 12-16 March 2018
R ChIP-Seq next-gen-sequencing
updated 11 months ago by 43k • written 6.3 years ago by ★ 2.5k
0
votes
0
replies
667
views
News: Gene Ontology Virtual User Meeting
Ontology GO Enrichment Gene-Ontology
updated 10 months ago by 43k • written 3.9 years ago by • 0
0
votes
0
replies
545
views
News: precisionFDA & Georgetown ICBI Brain Cancer Predictive Modeling Challenge Extension and New Incentive
genome
updated 10 months ago by 43k • written 4.2 years ago by ▴ 150
2
votes
0
replies
1.4k
views
News: Community Feedback - OBF mailing list issues
Biojava Biopython EMBOSS BioPerl Bioruby
updated 11 months ago by 43k • written 6.3 years ago by ★ 2.2k
0
votes
0
replies
777
views
News: Do you want to improve your programming skills?
Programming Unix Bash Python
updated 10 months ago by 43k • written 4.8 years ago by ★ 2.5k
0
votes
0
replies
1.1k
views
News: Comparative Genomics Workshop (Berlin, 1-5 October 2018). Last Call
next-gen PACBIO
updated 10 months ago by 43k • written 5.7 years ago by ★ 2.5k
0
votes
0
replies
756
views
News: EMBO | EMBL Symposium: The Four-Dimensional Genome
microscopy genome DNA genomics
updated 10 months ago by 43k • written 4.7 years ago by ▴ 10
1
vote
0
replies
1.2k
views
News: Hands-on Training on Cloud Computing @ NIH, USA, April 30, 2018
analysis server ngs cloud
updated 11 months ago by 43k • written 6.1 years ago by ▴ 140
894 results • Page 4 of 18
Recent Votes
High fold change values
C: Bcftools Mpileup Removes Marked Duplicates?
Prediction tools summary - zero values
A: Error with Formatdb of legacy blast?
Error with Formatdb of legacy blast?
Answer: How to convert SAM/BAM file to GTF/GFF file?
A: Ribo-seq vs RNA-seq read count
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Recent Replies
Comment: ISCN annotation for SV/CN VCF files by adedare • 0
https://res.saletool.cn/vcf/18084521725806
Comment: ISCN annotation for SV/CN VCF files by adedare • 0
https://res.saletool.cn/vcf/18084435127462
Comment: How can I solve this error? by 22211020193 • 0
I want to conduct GWAS meta-analysis using metal software.
Comment: How to reduce the variation of CIBERSORTx results? by feather-W • 0
Hi LChart, Thanks for your reply. Yes, the identical command lines produce different results in CIBERSORTx S-mode. Although I input the da…
Comment: Removing duplicates by joe ▴ 490
I *could* imagine an ONT scenario where you'd want to remove duplicates (amplicon-seq, etc) but likely for variant calling there is no need…
Comment: Removing duplicates by samuel.a.odonnell ▴ 510
As above, you do not need to worry about duplicates for ONT data Also have you looked at using other tools for variant calling more suited…
Answer: Pediococcus acidilactici sequence analysis by geneontologyhelp ▴ 340
If you're looking for the GO annotations for *Pediococcus acidilactici*, these are available. Using the instructions under [*2. All other…
Answer: What is the normalization status of metabric data? by etiennedanis ▴ 10
I just found an answer to this question here: [https://groups.google.com/g/cbioportal/c/hm_i4jbG1uc/m/h9rNYOvpAAAJ][1] [1]: https://gro…
Comment: Removing duplicates by joe ▴ 490
With ONT you will only have PCR duplicates. 'Read' (you mean optical?) duplicates are an artifact of cluster-based sequencing (ie Illumina)…
Comment: assembly using CCS, CLR, CCS_CLR sequences together? by GenoMax 141k
PacBio has some recommendations on software for genome assemblies on this page (which you may have seen but just in case): https://www.pacb…
Answer: DEG analysis of RNA-seq data across multiple tissues and two conditions by swbarnes2 14k
I would not put totally different tissues in the same DESeq object. I don't think that's going to do good things for normalization or disp…
Comment: Removing duplicates by quentinperriere • 0
pcr duplicates or/and read duplicates should I use this command to remove them ? or we don't talk about duplicates when dealing with ONT ??…
Comment: How to reduce the variation of CIBERSORTx results? by LChart 3.9k
If you didn't change the input signature matrix, the input RNA matrix, or the input parameters - what did you change? Is the statement that…
Answer: Inconsistency in SNP detection pipelines for multi-sample analysis by LChart 3.9k
> To replicate GVCF behavior and avoid issues with 0/0 genotypes appearing as missing, I don't use the -v option I'm not sure what you m…
Comment: Supergnova stuck in tutorial by GenoMax 141k
Your best option may be to email the author (and/or the senior author from the paper). Let them know that the FTP links mentioned on GitHub…
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