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1,000 results • Page 4 of 20
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5
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2
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3.5k
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News: Tuesday 10/29 Live Tour Of New Features In Integrated Genome Browser 8
genome-browser RNA-seq ChIP-seq
updated 6 months ago by 40k • written 9.9 years ago by ★ 2.4k
0
votes
2
replies
3.2k
views
News: Course: Practical GWAS using Linux and R. 23-27 October 2017, Berlin (Germany)
GWAS Linux R
updated 4 months ago by 40k • written 6.1 years ago by ★ 2.3k
6
votes
2
replies
2.1k
views
News: Galaxy-specific Biostar Instance
galaxy biostars
updated 7 months ago by 40k • written 9.4 years ago by ▴ 380
2
votes
2
replies
1.5k
views
News: User-friendly Bioinformatics From RNA Seq to Biological Interpretation
machine-learning RNA-seq
updated 4 months ago by 40k • written 5.2 years ago by ▴ 10
6
votes
2
replies
1.7k
views
News: Belly Button Biodiversity Project Requests Your Analysis
biodiversity project
updated 7 months ago by 40k • written 10.9 years ago by 11k
7
votes
2
replies
2.1k
views
News: Upcoming Hands-On Workshop: microRNA Analysis Using Next-Generation Sequencing
NGS microRNA workshop
updated 5 months ago by 40k • written 7.3 years ago by 10k
0
votes
2
replies
876
views
News: Online Course - A Practical Introduction to NGS Data Analysis (February 01-03, 2023)
NGS DNAseq variant-calling RNAseq
8 months ago by David Langenberger 10k
8
votes
2
replies
2.2k
views
News: The bioinformatics chat is a new podcast about bioinformatics. In the first episode we discuss Scallop, a transcriptome assembler
podcast Assembly RNA-Seq
updated 4 months ago by 40k • written 6.4 years ago by ▴ 120
2
votes
2
replies
2.5k
views
News: Interview Dealing with RADseq data: some tips from our instructors
NGS RADseq
updated 4 months ago by 40k • written 5.9 years ago by ★ 2.3k
1
vote
2
replies
1.6k
views
News: NCBI Datasets - try it out!
Assembly refseq genome ncbi
updated 3 months ago by 40k • written 3.5 years ago by ★ 3.6k
1
vote
2
replies
1.3k
views
News: Webinar on Diagnosis of Rare Diseases using NGS Based Multi-gene Testing- Case studies by Dr.Aparna Ganapathy on 18 Apr 2018
variant-calling rare-disease dna-seq strand-ngs
updated 4 months ago by 40k • written 5.5 years ago by ▴ 70
8
votes
2
replies
790
views
News: Save time and money through improved onboarding of your NGS data scientists
NGS data-analysis
updated 6 months ago by 40k • written 3.7 years ago by 10k
2
votes
2
replies
320
views
News: NCBI BLAST+ 2.14.1 Now Available
NCBI BLAST
4 weeks ago by PeterC_NCBI ▴ 330
2
votes
2
replies
1.9k
views
News: Briefings In Bioinformatics International, Interdisciplinary, Multi-Level Bioinformatics Training And Education
education
updated 6 months ago by 40k • written 10.0 years ago by 157k
0
votes
2
replies
565
views
News: The Practice of RADseq: Population Genomics Analysis with Stacks (RADS02) Early bird deadline approaching - 20th September
population-genomics radseq stacks
updated 6 days ago by ★ 1.4k • written 7 days ago by ▴ 110
13
votes
2
replies
1.3k
views
News: Thank you Biostars!
meta
updated 3 months ago by 40k • written 4.4 years ago by ▴ 140
4
votes
2
replies
2.9k
views
News: NCBI NOW (Next generation sequencing Online Workshop) October 13 - 23 , 2015
NCBI DNA-Seq NGS RNA-Seq
updated 5 months ago by 40k • written 8.0 years ago by ★ 2.2k
3
votes
2
replies
2.5k
views
News: Samtools/htslib v1.2 released
htslib samtools bcftools
updated 6 months ago by 40k • written 8.6 years ago by 103k
11
votes
2
replies
1.4k
views
News: ASA discusses limitations of p-values what are the alternatives?
statistics p-value
updated 5 months ago by 40k • written 7.5 years ago by 14k
5
votes
2
replies
1.5k
views
News: #scRNABIO & organoids meeting
single-cell-sequencing microfluidics organoids
updated 4 months ago by 40k • written 5.1 years ago by ▴ 320
4
votes
2
replies
1.2k
views
News: Hands-On Workshop: How to use bisulfite-treated sequencing to study DNA methylation (BS-Seq, Bisulfite-Seq, WGBS)
Workshop methylation bisulfite
updated 3 months ago by 40k • written 4.0 years ago by ★ 1.0k
2
votes
2
replies
1.3k
views
News: GeNets: a unified web platform for network-based genomic analyses
networks pathways RNA-Seq visualization
updated 4 months ago by 40k • written 5.3 years ago by ★ 5.2k
1
vote
2
replies
1.6k
views
News: Workshop: Data analysis in high throughput biology. deadline today (2 places left)
next-gen R RNA-Seq
updated 4 months ago by 40k • written 6.5 years ago by ★ 2.3k
0
votes
2
replies
911
views
News: Training - Introduction to Deep Learning
Deep-Learning Machine-Learning Python-Programming
updated 3 months ago by 40k • written 3.2 years ago by ★ 2.3k
5
votes
2
replies
4.4k
views
News: GeneSCF (Gene Enrichment Tool): Advice to users
kegg GeneSCF GO annotation
updated 7 months ago by 40k • written 6.7 years ago by 7.5k
3
votes
2
replies
1.1k
views
News: Genome Informatics meeting software list
meetings genomics informatics software
updated 4 months ago by 40k • written 5.9 years ago by 26k
3
votes
2
replies
483
views
News: Participate in a NCBI/NIAID Virtual Codeathon: VCF Files for Population Genomics, Jul 31 - Aug 4, 2023
VCF SARS-CoV-2 NCBI Codeathon
4 months ago by PeterC_NCBI ▴ 330
2
votes
2
replies
818
views
News: Interested in Machine Learning?
deep-learning machine-learning
updated 3 months ago by 40k • written 4.4 years ago by ★ 2.3k
2
votes
2
replies
1.8k
views
News: Introducing a new Instructor of Physalia-Courses: Dr. January Weiner
next-gen SNP sequence
updated 5 months ago by 40k • written 6.8 years ago by ★ 2.3k
0
votes
2
replies
1.5k
views
News: Free Webinar: Sequence alignment: the central step in reference based Next Generation Sequencing data analysis
next-gen SAM alignment sangenix
updated 5 months ago by 40k • written 6.7 years ago by ▴ 750
6
votes
2
replies
2.4k
views
News: Interested in de novo transcriptome assembly using Trinity? Check out our interview to Brian Haas
alignment RNA-Seq
updated 5 months ago by 40k • written 6.6 years ago by ★ 2.3k
6
votes
2
replies
968
views
News: Temporarily reduced functionality of Ensembl and Ensembl Genomes
Ensembl
updated 4 months ago by 40k • written 4.6 years ago by ★ 2.3k
0
votes
2
replies
132
views
News: NGS & Microarray Custom Data Analysis Training Program
snp RNA-Seq next-gen-sequencing ChIP-Seq
updated 3 months ago by 40k • written 4.2 years ago by • 0
1
vote
2
replies
543
views
News: Course: Network Analysis in R
NetworkAnalyis R
8 months ago by carlopecoraro2 ★ 2.3k
1
vote
2
replies
2.2k
views
News: Workshop: Metagenomics, Metatranscriptomics, and multi'omics for microbial community studies (9-13 April 2018 in Berlin)
Metatranscriptomics Metagenomics
updated 4 months ago by 40k • written 5.6 years ago by ★ 2.3k
0
votes
2
replies
1.9k
views
News: RNA-Seq Data Analysis Workshop in Berlin, Germany (13 - 16 March 2018)
NGS RNA-Seq sequencing
updated 4 months ago by 40k • written 5.7 years ago by 10k
0
votes
2
replies
652
views
News: Course - Metagenomics, metatranscriptomics, and multi'omics for microbial community Studies
Metagenomics Metatranscriptomics Multiomics
updated 6 months ago by 40k • written 6 months ago by ★ 2.3k
1
vote
2
replies
938
views
News: Sage Bionetworks is seeking researchers and data scientists to participate in software user research!
research software
updated 4 months ago by 40k • written 4.6 years ago by ▴ 30
6
votes
2
replies
2.5k
views
News: RNA-Seq Data Analysis Workshop in Berlin, Germany (full)
NGS RNA-Seq workshop
updated 5 months ago by 40k • written 6.8 years ago by 10k
4
votes
2
replies
252
views
News: Standalone NCBI ClusteredNR database now available for download
ClusteredNR NCBI standalone BLAST
20 days ago by PeterC_NCBI ▴ 330
0
votes
2
replies
1.3k
views
News: Webinar on fast and accurate DNA variant calling on 26 Apr 2017
variant-calling SNP gatk strand-ngs alignment
updated 4 months ago by 40k • written 6.4 years ago by ▴ 70
0
votes
2
replies
1.7k
views
News: Webinar: Multi-omics: Challenges, opportunities and application to biomarker discovery
biomarker next-gen-sequencing multiomics cancer
updated 4 months ago by 40k • written 6.2 years ago by ▴ 750
1
vote
2
replies
504
views
News: Gene Set Enrichment Analysis in R/Bioconductor
Gene-Set-Enrichment-Analysis R Cancer-Genomics GSEA
10 months ago by carlopecoraro2 ★ 2.3k
2
votes
2
replies
2.1k
views
News: De Novo Transcriptome Analysis (Assembly and Differential Gene Expression in Non-Model Organisms)
Assembly RNA-Seq
updated 5 months ago by 40k • written 7.2 years ago by ▴ 400
1
vote
2
replies
1.2k
views
News: New chat server (Discord) for bioinformatics
community
8 months ago by Samuel Lampa ★ 1.3k
1
vote
2
replies
1.5k
views
News: My own brand-new blog for bioinformatics learning
learning
updated 7 months ago by 40k • written 5.8 years ago by ▴ 100
0
votes
2
replies
2.0k
views
News: Seqnews.Net: Discover And Share News On Next-Generation Sequencing
next-gen-sequencing
updated 7 months ago by 40k • written 10.8 years ago by 10k
14
votes
2
replies
5.3k
views
News: Open Targets, identifying targets for drug development in the treatment of diseases.
database Drug open-targets
updated 5 months ago by 40k • written 7.3 years ago by ★ 5.2k
0
votes
2
replies
1.9k
views
News: Illumina iSeq 100 sequencer
firefly illumina iSeq100
updated 4 months ago by 40k • written 5.7 years ago by 134k
1
vote
2
replies
1.7k
views
News: Making efficient NGS data analysis softwares - GATB-Core Library Tutorial
next-gen GATB
updated 5 months ago by 40k • written 7.0 years ago by ▴ 140
1,000 results • Page 4 of 20
Recent Votes
A: In Seurat, How Do nCount_RNA Differ from nFeature_RNA?
How to identify 16s sequences from binning data(contigs)?
geom_signif() uses t-test to compare between more than 3 groups... Isn't this wrong?
Answer: Filter transcription factors
Comment: Calculation of TMB on gene level
Comment: Should I Learn Docker to Run Command Line Bioinformatics Tool?
Comment: ATAC-seq troubleshoot - Just Noise
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Comment: gene correlations in between two groups by ATpoint 76k
And how should I know this? I cannot read minds, nor see your screen, data or anything. Please ask a good question with necessary details. …
Comment: gene correlations in between two groups by edus_bioinfo ▴ 40
Thanks. But they are already analyzed. Afaik it analyzes raw data. In my dataset for each gene there is score. I want to interpret the data…
Answer: GWAS phenotype by dthorbur ▴ 550
Hello again. Yes, you can conduct GWAS using binary trait data, but it comes with a whole suite of complications. See [this](https://ww…
Comment: geom_signif() uses t-test to compare between more than 3 groups... Isn't this wr by RM123 ▴ 10
Hello Dariober, That seems like a good solution, however I'm pretty new to R. Could you tell me how I can do that?
Comment: how to create a loop in R by Nicolas Rosewick 10k
Not really a bioinformatics related question. Start by looking at R tutorial, there is plenty of them online e.g. : https://www.statmethods…
Comment: Violin plot (Monocle 3) - Troubleshooting by fracarb8 ★ 1.2k
You did not add the screenshot.
Answer: BED files by Alex Reynolds 35k
Generically via `bedmap`: ``` bedmap --echo --echo-map --count exome.bed annotations.bed > answer.bed ``` The `annotations.bed` fil…
Comment: geom_signif() uses t-test to compare between more than 3 groups... Isn't this wr by dariober 14k
It seems to me that anova followed by HSD is a more sensible approach than applying independent t-tests. Granted this is the first time I s…
Comment: BED files by barslmn ★ 1.8k
I am guessing you want the annotation files. https://ftp.ncbi.nlm.nih.gov/refseq/H_sapiens/annotation/GRCh38_latest/refseq_identifiers/
Comment: Filter human transcription factors by Alex Reynolds 35k
Curious how redundant these TFs are. Jeff Vierstra has done some analysis on this to simplify model sets: https://www.vierstra.org/resource…
Comment: Read block operation failed with BAM file by Alex Reynolds 35k
https://github.com/samtools/htslib/pull/1676 patches a seek issue in `htslib` (upon which `samtools` and `pysam` depend)
Comment: Merging the filename with tsv files for master file by barslmn ★ 1.8k
Could you add samples from your files and your expected output.
Comment: Download an example of fully-imputed VCF files ? by barslmn ★ 1.8k
Check out the 1000 genomes project. https://ftp.1000genomes.ebi.ac.uk/vol1/ftp/release/20130502/
Comment: obtaining circular RNAs' sequences from circBase by Barry Digby ★ 1.2k
Sorry my mistake! it’s been a minute since I’ve used these sites. Yes that it is common place, what is the goal of your analysis using th…
Comment: gene correlations in between two groups by ATpoint 76k
Use specialized software to analyse CRISPR/RNAi data, such as MAGeCK.
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