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795
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167
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141k
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109 follow
News: The Biostar Handbook. A bioinformatics e-book for beginners.
training handbook
updated 12 weeks ago by 2.6k • written 7.4 years ago by 100k
122
votes
44
replies
11k
views
24 follow
News: Help Make Biostar Better! Add Your Feedback, Opinions And Suggestions.
meta biostars
updated 5 months ago by 43k • written 11.4 years ago by 100k
81
votes
39
replies
7.5k
views
11 follow
News: State Of Biostar - Future Directions (January 2013)
biostars
updated 14 months ago by 43k • written 11.3 years ago by 100k
59
votes
31
replies
4.9k
views
12 follow
News: Example of how bioinformaticians can publish in Scientific Reports (by nature publishing group) using publicly available NGS data
publication NGS
updated 12 months ago by 43k • written 7.3 years ago by 11k
11
votes
25
replies
6.2k
views
15 follow
News: Questions for the NCBI Next Generation Sequencing Online Workshop Can be Posted with the NCBI_NOW Tag
NCBI_NOW
updated 12 months ago by 43k • written 8.6 years ago by ▴ 330
54
votes
24
replies
4.1k
views
12 follow
News: Big news from Microsoft. BASH on windows.
windows
updated 12 months ago by 43k • written 8.1 years ago by ★ 3.2k
57
votes
24
replies
6.5k
views
14 follow
News: Join us in building a bioinformatics resource: The Biostar Handbook
biostar-handbook
updated 19 months ago by 43k • written 8.6 years ago by 100k
24
votes
21
replies
7.5k
views
9 follow
News: Misunderstood parameter of NCBI BLAST
blast alignment
updated 11 months ago by 43k • written 5.6 years ago by ★ 3.4k
45
votes
19
replies
6.5k
views
8 follow
News: Gamestorming For Bioinformatics
gamestorming
updated 14 months ago by 43k • written 11.6 years ago by 28k
15
votes
18
replies
8.1k
views
6 follow
News: New Free Community Tutorial Website For Bioinformatics Learning
ChIP-seq genome snp RNA-seq
updated 13 months ago by 43k • written 10.7 years ago by ▴ 610
51
votes
17
replies
4.0k
views
News: Biostars 3.0 is now under testing. It has groups, charms and other interesting features.
meta biostars
updated 14 months ago by 43k • written 9.1 years ago by 100k
10
votes
17
replies
3.4k
views
7 follow
News: Tell us what you think of the ENA browser?
ena
updated 12 months ago by 43k • written 7.4 years ago by ★ 1.8k
12
votes
17
replies
4.1k
views
6 follow
News: A programming language for living cells [Cello]
dna sequence research language
updated 12 months ago by 43k • written 8.0 years ago by 11k
46
votes
16
replies
5.9k
views
12 follow
News: Google announces DeepVariant
genome deep-learning google
updated 11 months ago by 43k • written 6.4 years ago by ▴ 990
21
votes
16
replies
6.2k
views
6 follow
News: Pandora's Toolbox - a collection of bioinformatics programs
Assembly alignment RNA-Seq
updated 2.1 years ago by 43k • written 9.3 years ago by ★ 1.1k
11
votes
13
replies
3.2k
views
News: Ensembl datacentre shut-down: Friday 26th August - Tuesday 30th August 2016
Maintenance Ensembl
updated 12 months ago by 43k • written 7.7 years ago by ★ 2.4k
48
votes
13
replies
26k
views
10 follow
News: The New Grch38 Human Genome Browser Has Arrived!
ucsc assembly GRCh38 hg38
updated 2.2 years ago by 43k • written 10.1 years ago by 28k
6
votes
13
replies
2.1k
views
News: Ensembl reduced functionality: 10th March-16th April 2020
BLAT VEP Ensembl service
updated 10 months ago by 43k • written 4.2 years ago by ★ 2.4k
7
votes
11
replies
2.0k
views
News: Bringing the power of Big Data to biomedical researchers
NGS biomedical-research
updated 11 months ago by 43k • written 6.7 years ago by ▴ 100
19
votes
11
replies
6.9k
views
News: Solid Software Tools: Denovo Assembly/Xsq Tools Pipeline Mirrored At Biostar
SOLID
updated 14 months ago by 43k • written 11.6 years ago by 100k
11
votes
11
replies
1.8k
views
8 follow
News: Python Data Visualization Course. Last 3 spots left
next-gen
updated 11 months ago by 43k • written 5.4 years ago by ★ 2.5k
21
votes
11
replies
9.4k
views
6 follow
News: NovaSeq from Illumina (updated info)
illumina NovaSeq
updated 12 months ago by 43k • written 7.3 years ago by 141k
14
votes
11
replies
2.9k
views
6 follow
News: Announcing bioSyntax: Syntax highlighting for biological files
computational-biology
updated 11 months ago by 43k • written 6.3 years ago by ▴ 170
18
votes
11
replies
4.0k
views
News: Full Genome Sequencing Service 30x whole human genome sequencing for $3,490 (project cancelled)
genome next-gen-sequencing
updated 2.3 years ago by 43k • written 9.6 years ago by ▴ 100
22
votes
10
replies
5.5k
views
News: samtools/bcftools/htslib 1.0 released
htslib samtools bcftools
updated 2.3 years ago by 43k • written 9.7 years ago by ★ 2.2k
8
votes
10
replies
4.0k
views
News: New versions of Minia and DSK (2.0.x)
minia dsk assembly gatb
updated 2.0 years ago by 43k • written 9.2 years ago by ★ 1.5k
17
votes
9
replies
3.8k
views
News: My Ncbi Curriculum Vitae Web Application: Sciencv
ncbi
updated 13 months ago by 43k • written 10.6 years ago by 161k
6
votes
9
replies
4.2k
views
News: 1000 Genomes : The Initial Phase 3 variant list and phased genotypes.
1000genomes
updated 13 months ago by 43k • written 9.8 years ago by 161k
27
votes
9
replies
4.1k
views
News: OSX 10.11 released 30th Sep will be "rootless"
mac osx
updated 19 months ago by 43k • written 8.6 years ago by 13k
0
votes
9
replies
2.3k
views
News: Practical Genomics: From Biology to Biostatistics Workshop (Baltimore, MD)
workshop
updated 13 months ago by 43k • written 9.8 years ago by 10k
11
votes
9
replies
7.7k
views
News: NovaSeq quality analysis
sequencing
updated 11 months ago by 43k • written 6.8 years ago by 20k
22
votes
9
replies
6.7k
views
News: Epigenetics Workshop - DNA Methylation Data Analysis
bisulfite-sequencing workshop epigenetics
updated 15 months ago by 43k • written 8.9 years ago by 11k
13
votes
9
replies
2.6k
views
7 follow
News: Inviting NEW Biostars moderators to join Biostars slack channel
slack moderator
6 months ago by GenoMax 141k
13
votes
8
replies
2.7k
views
News: NCBI is going to eliminate GI identifiers
ncbi GI
updated 12 months ago by 43k • written 8.1 years ago by ★ 2.9k
38
votes
8
replies
1.6k
views
6 follow
News: What happens when a bioinformatician has his own genome sequenced for $300?
DNAseq DNA WGS
updated 10 months ago by 35k • written 10 months ago by 11k
12
votes
8
replies
7.1k
views
News: rRNA Depletion / Poly-A Selection Responsible for RNA-seq Bias
rRNA-depletion RNA-seq-bias
updated 13 months ago by 43k • written 9.8 years ago by ▴ 650
8
votes
8
replies
2.9k
views
News: Coronavirus Genome Analysis: a new volume in the Biostar Handbook
biostar-handbook education
updated 10 months ago by 43k • written 4.1 years ago by 100k
12
votes
8
replies
3.4k
views
News: 'Potential Rna-Dna Binding Site In Alu Repeat', Or 'Why Should I Allow Multiple Mapping Positions When Analyzing Chipseq Data?'
chipseq rna
updated 13 months ago by 43k • written 10.8 years ago by 11k
7
votes
8
replies
4.1k
views
News: Next-Gen Sequencing Tutorials On Cubelp (Cranfield Bioinformatics Electronic Learning Platform)
genome chip-seq snp assembly
updated 18 months ago by 43k • written 10.7 years ago by ▴ 610
7
votes
8
replies
1.9k
views
News: A new Stack Exchange site for Research Computing
unix linux
updated 11 months ago by 43k • written 6.4 years ago by ▴ 690
25
votes
7
replies
2.8k
views
6 follow
News: Who qualifies to be a bioinformatician?
resume bioinformatician vc
updated 21 months ago by 43k • written 9.0 years ago by 161k
10
votes
7
replies
2.3k
views
News: Free draft copy of book on bioinformatics tools
alignment Assembly RNA-seq next-gen
updated 15 months ago by 43k • written 8.9 years ago by ★ 1.1k
27
votes
7
replies
3.6k
views
News: The Biostar Swarm: A Visualization
biostars
updated 14 months ago by 43k • written 11.2 years ago by 100k
17
votes
7
replies
9.0k
views
News: Upcoming NGS Workshop: A Beginner's Guide to NGS Data Analysis
workshop Assembly transcriptomics RNA-Seq
updated 2.1 years ago by 43k • written 9.4 years ago by 11k
23
votes
7
replies
4.6k
views
News: Research accounts on GitHub
github git
updated 13 months ago by 43k • written 9.9 years ago by 161k
21
votes
7
replies
7.7k
views
News: Survey: Rna-Seq Analysis For Differential Gene/Transcript Expression [Updated With Results]
transcript RNA-seq gene
updated 14 months ago by 43k • written 11.4 years ago by ▴ 250
13
votes
7
replies
5.8k
views
News: Free HiSeq X Ten human genome fastq test data
HiSeq-X-Ten Human-genome Fastq next-gen
updated 2.4 years ago by 43k • written 9.7 years ago by ★ 1.8k
24
votes
7
replies
4.4k
views
News: #Bioinformatics Crowdcoding
crowd-coding
updated 13 months ago by 43k • written 10.8 years ago by 161k
10
votes
7
replies
2.8k
views
News: Linux for Biologists e-book (free to read online)
linux python galaxy conda virtual-machine
2.6 years ago by vimalkvn ▴ 320
6
votes
7
replies
2.2k
views
News: NCBI wants to remove quality scores from SRA
quality-scores trimming Assembly genome SRA
updated 10 months ago by 43k • written 3.8 years ago by ▴ 40
1,000 results • Page 1 of 20
Recent Votes
bcftools multiple commands
bcftools pipe generated file from first command with second
C: How to setup a Summarized Experiment
A: How to download genome assemblies from NCBI with a list of GCA identifiers?
what's the genomic location and name of gene responsible for orange and black patches in calico cats
Comment: featureCounts --primary tag counting uniquely mapped reads and excludes multi-ma
Answer: Duplicate marking, read names, and the SRA
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Answer: MEGA Analysis Issue on High-Performance Computer by Mensur Dlakic ★ 27k
> I have ensured that I am using the latest version of MEGA and that other applications are not consuming excessive resources during the an…
Comment: Installing/switching between versions of R/Rstudio/Bioconductor on personal mach by BioinfGuru ★ 1.7k
Some of us are still learning and fall foul to knowledge limitation fairly regularly. Luckily we have people to put us in our place.
Answer: Running blastp with BLAST+ 2.15.0 against custom database; need to identify hits by GenoMax 141k
> I know that I should be able to collect protein sequences from the blastp results into a file, but I do not know how to do this. You c…
Comment: how to find genes that are significantly expressed in brain cortex samples by rheab1230 ▴ 140
I got the normalized gene count from gtex portal. they use inverse quantile normalization
Comment: what's the genomic location and name of gene responsible for orange and black pa by Matthias Zepper 4.5k
It is not entirely off, but evidently also not correct. Melanin biosynthesis is a multistep process, that indeed prominently involves the…
Comment: Installing/switching between versions of R/Rstudio/Bioconductor on personal mach by Ram 43k
> so a single Rscript could utilise multiple environments and versions How is that sane, let alone "better"? Also, why use `snap` for curl…
Comment: how to find genes that are significantly expressed in brain cortex samples by Ram 43k
Normalized how?
Comment: Duplicate marking, read names, and the SRA by GenoMax 141k
With public data one has to work with what is there. If the information about position is absent then only thing that could be done is to l…
Comment: Installing/switching between versions of R/Rstudio/Bioconductor on personal mach by BioinfGuru ★ 1.7k
Or better yet. To have an R package that allows access to conda environments via "conda list env" so that environments can be switched with…
Comment: what's the genomic location and name of gene responsible for orange and black pa by GenoMax 141k
If GPT is right then it says that: > The specific gene responsible for the orange and non-orange (black or > gray) fur colors in cats is t…
Comment: what's the genomic location and name of gene responsible for orange and black pa by Jean-Karim Heriche 27k
As far as I know the Orange locus hasn't been mapped to a gene. Maybe this paper will help in narrowing the search: https://www.ncbi.nlm.ni…
Comment: Duplicate marking, read names, and the SRA by Luka • 0
>Curios if there a reference for this? [Apparently it's not deprecated yet][1], but will be soon and the SRA intends for it to be at some …
Comment: Installing/switching between versions of R/Rstudio/Bioconductor on personal mach by Ram 43k
I prefer RStudio for new projects as well. The moment I need versions though, RStudio becomes a burden. I wish one could launch RStudio fro…
Comment: what's the genomic location and name of gene responsible for orange and black pa by GenoMax 141k
According to ChatGPT: The gene responsible for the orange and black patches of fur in calico cats (and tortoiseshell cats) is the X-linked …
Comment: Installing/switching between versions of R/Rstudio/Bioconductor on personal mach by BioinfGuru ★ 1.7k
Certainly true. Switching versions is way simpler that way, at the cost of the familiarity of the Rstudio IDE - especially if the code is w…
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