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1,000 results • Page
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714
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159
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100 follow
News:
The Biostar Handbook. A bioinformatics e-book for beginners.
training
tutorial
News
handbook
updated 4 months ago by
Biostar
1.5k • written 6.1 years ago by
Istvan Albert
96k
122
votes
42
replies
8.6k
views
21 follow
News:
Help Make Biostar Better! Add Your Feedback, Opinions And Suggestions.
biostar
meta
News
updated 6.1 years ago by
jonasmst
▴ 400 • written 10.2 years ago by
Istvan Albert
96k
81
votes
39
replies
5.9k
views
11 follow
News:
State Of Biostar - Future Directions (January 2013)
biostar
News
updated 10.0 years ago by
João Rodrigues
★ 2.5k • written 10.1 years ago by
Istvan Albert
96k
59
votes
31
replies
3.3k
views
12 follow
News:
Example of how bioinformaticians can publish in Scientific Reports (by nature publishing group) using publicly available NGS data
publication
NGS
News
updated 6.1 years ago by
helene
▴ 50 • written 6.1 years ago by
David Langenberger
9.8k
11
votes
25
replies
4.9k
views
15 follow
News:
Questions for the NCBI Next Generation Sequencing Online Workshop Can be Posted with the NCBI_NOW Tag
NCBI_NOW
News
updated 4 months ago by
Ram
37k • written 7.3 years ago by
DCGenomics
▴ 320
57
votes
24
replies
5.4k
views
14 follow
News:
Join us in building a bioinformatics resource: The Biostar Handbook
biostar-handbook
updated 4 months ago by
Ram
37k • written 7.4 years ago by
Istvan Albert
96k
54
votes
24
replies
3.1k
views
12 follow
News:
Big news from Microsoft. BASH on windows.
windows
News
written 6.8 years ago by
poisonAlien
★ 3.1k
24
votes
21
replies
5.6k
views
9 follow
News:
Misunderstood parameter of NCBI BLAST
alignment
blast
News
4.3 years ago by
Farbod
★ 3.3k
45
votes
19
replies
5.5k
views
8 follow
News:
Gamestorming For Bioinformatics
News
10.3 years ago by
Giovanni M Dall'Olio
27k
15
votes
18
replies
7.2k
views
6 follow
News:
New Free Community Tutorial Website For Bioinformatics Learning
chip-seq
snp
News
rna-seq
genome
updated 16 months ago by
Ram
37k • written 9.5 years ago by
rob234king
▴ 610
12
votes
17
replies
3.1k
views
6 follow
News:
A programming language for living cells [Cello]
dna
language
research
sequence
News
6.8 years ago by
Sukhi Singh
11k
50
votes
17
replies
3.2k
views
News:
Biostars 3.0 is now under testing. It has groups, charms and other interesting features.
biostar
meta
updated 6 months ago by
Ram
37k • written 7.8 years ago by
Istvan Albert
96k
10
votes
17
replies
2.4k
views
7 follow
News:
Tell us what you think of the ENA browser?
ena
News
updated 13 months ago by
predeus
★ 1.8k • written 6.2 years ago by
Laura
★ 1.8k
45
votes
16
replies
4.8k
views
12 follow
News:
Google announces DeepVariant
genome
deep learning
google
News
updated 5.1 years ago by
Chris Miller
22k • written 5.2 years ago by
Hussain Ather
▴ 970
21
votes
16
replies
5.0k
views
6 follow
News:
Pandora's Toolbox - a collection of bioinformatics programs
Assembly
alignment
RNA-Seq
updated 10 months ago by
Ram
37k • written 8.1 years ago by
ugly.betty77
★ 1.1k
6
votes
13
replies
1.3k
views
News:
Ensembl reduced functionality: 10th March-16th April 2020
Ensembl
VEP
BLAT
service
News
4 months ago by
Ben_Ensembl
★ 2.1k
11
votes
13
replies
2.4k
views
News:
Ensembl datacentre shut-down: Friday 26th August - Tuesday 30th August 2016
Ensembl
Maintenance
News
6.4 years ago by
Ben_Ensembl
★ 2.1k
48
votes
13
replies
24k
views
10 follow
News:
The New Grch38 Human Genome Browser Has Arrived!
ucsc
assembly
GRCh38
hg38
updated 12 months ago by
Ram
37k • written 8.9 years ago by
Giovanni M Dall'Olio
27k
11
votes
11
replies
1.2k
views
8 follow
News:
Python Data Visualization Course. Last 3 spots left
next-gen
News
updated 4.2 years ago by
JohnBlue81
▴ 300 • written 4.2 years ago by
carlopecoraro2
★ 2.2k
19
votes
11
replies
6.3k
views
News:
Solid Software Tools: Denovo Assembly/Xsq Tools Pipeline Mirrored At Biostar
News
updated 9 months ago by
Ram
37k • written 10.4 years ago by
Istvan Albert
96k
7
votes
11
replies
1.5k
views
News:
Bringing the power of Big Data to biomedical researchers
NGS
biomedical research
News
updated 5.5 years ago by
Michael Dondrup
52k • written 5.5 years ago by
Paul Kutzner
▴ 100
18
votes
11
replies
3.3k
views
News:
Full Genome Sequencing Service 30x whole human genome sequencing for $3,490 (project cancelled)
genome
next-gen-sequencing
updated 12 months ago by
Ram
37k • written 8.4 years ago by
hcatlin
▴ 100
14
votes
11
replies
2.2k
views
6 follow
News:
Announcing bioSyntax: Syntax highlighting for biological files
bioinformatics
computational biology
News
updated 4.8 years ago by
ababaian
▴ 50 • written 5.1 years ago by
anicet.ebou
▴ 170
21
votes
11
replies
8.7k
views
6 follow
News:
NovaSeq from Illumina (updated info)
illumina
NovaSeq
News
5.3 years ago by
GenoMax
125k
8
votes
10
replies
3.4k
views
News:
New versions of Minia and DSK (2.0.x)
minia
dsk
assembly
gatb
updated 9 months ago by
Ram
37k • written 8.0 years ago by
Rayan Chikhi
★ 1.5k
22
votes
10
replies
4.9k
views
News:
samtools/bcftools/htslib 1.0 released
htslib
samtools
bcftools
updated 13 months ago by
Ram
37k • written 8.5 years ago by
rtliu
★ 2.2k
6
votes
9
replies
3.6k
views
News:
1000 Genomes : The Initial Phase 3 variant list and phased genotypes.
News
1000genomes
updated 15 months ago by
Ram
37k • written 8.6 years ago by
Pierre Lindenbaum
152k
27
votes
9
replies
3.5k
views
News:
OSX 10.11 released 30th Sep will be "rootless"
mac
osx
updated 4 months ago by
Ram
37k • written 7.3 years ago by
John
13k
22
votes
9
replies
5.9k
views
News:
Epigenetics Workshop - DNA Methylation Data Analysis
bisulfite-sequencing
workshop
epigenetics
updated 25 days ago by
Ram
37k • written 7.6 years ago by
David Langenberger
9.8k
13
votes
9
replies
1.8k
views
News:
Inviting NEW Biostars moderators to join Biostars slack channel
moderator
slack
News
updated 4.1 years ago by
ATpoint
68k • written 4.7 years ago by
GenoMax
125k
0
votes
9
replies
1.9k
views
News:
Practical Genomics: From Biology to Biostatistics Workshop (Baltimore, MD)
workshop
News
updated 13 months ago by
Ram
37k • written 8.6 years ago by
Matt Shirley
10k
17
votes
9
replies
3.2k
views
News:
My Ncbi Curriculum Vitae Web Application: Sciencv
ncbi
job
News
updated 9.3 years ago by
Giovanni M Dall'Olio
27k • written 9.3 years ago by
Pierre Lindenbaum
152k
9
votes
9
replies
6.7k
views
News:
NovaSeq quality analysis
sequencing
News
5.6 years ago by
Brian Bushnell
18k
13
votes
8
replies
2.2k
views
News:
NCBI is going to eliminate GI identifiers
GI
number
identifier
ncbi
News
6.9 years ago by
Anima Mundi
★ 2.9k
7
votes
8
replies
1.4k
views
News:
A new Stack Exchange site for Research Computing
unix
linux
programming
News
updated 5.2 years ago by
GenoMax
125k • written 5.2 years ago by
tiagoantao
▴ 690
12
votes
8
replies
2.9k
views
News:
'Potential Rna-Dna Binding Site In Alu Repeat', Or 'Why Should I Allow Multiple Mapping Positions When Analyzing Chipseq Data?'
chipseq
rna
binding
mapping
News
9.6 years ago by
David Langenberger
9.8k
8
votes
8
replies
2.1k
views
News:
Coronavirus Genome Analysis: a new volume in the Biostar Handbook
biostar handbook
bioinformatics
education
News
written 2.9 years ago by
Istvan Albert
96k
7
votes
8
replies
3.6k
views
News:
Next-Gen Sequencing Tutorials On Cubelp (Cranfield Bioinformatics Electronic Learning Platform)
genome
chip-seq
snp
assembly
updated 3 months ago by
Ram
37k • written 9.4 years ago by
rob234king
▴ 610
12
votes
8
replies
6.3k
views
News:
rRNA Depletion / Poly-A Selection Responsible for RNA-seq Bias
RNA-seq-bias
News
rRNA-depletion
updated 14 months ago by
Ram
37k • written 8.6 years ago by
support
▴ 640
25
votes
7
replies
2.3k
views
6 follow
News:
Who qualifies to be a bioinformatician?
resume
bioinformatician
vc
updated 6 months ago by
Ram
37k • written 7.8 years ago by
Pierre Lindenbaum
152k
27
votes
7
replies
3.1k
views
News:
The Biostar Swarm: A Visualization
biostar
updated 14 months ago by
Ram
37k • written 10.0 years ago by
Istvan Albert
96k
12
votes
7
replies
3.2k
views
News:
Welcome Ensembl REST with more endpoints!
rest-api
News
ensembl
updated 12 months ago by
Ram
37k • written 8.3 years ago by
Denise CS
★ 5.2k
24
votes
7
replies
4.0k
views
News:
#Bioinformatics Crowdcoding
News
updated 8.8 years ago by
Rad
▴ 800 • written 9.5 years ago by
Pierre Lindenbaum
152k
25
votes
7
replies
5.7k
views
News:
Pubmed Commons : A System That Enables Researchers To Share Their Opinions About Scientific Publications
ncbi
pubmed
News
9.3 years ago by
Pierre Lindenbaum
152k
13
votes
7
replies
5.0k
views
News:
Free HiSeq X Ten human genome fastq test data
HiSeq-X-Ten
Human-genome
Fastq
next-gen
updated 13 months ago by
Ram
37k • written 8.5 years ago by
rbagnall
★ 1.8k
6
votes
7
replies
2.5k
views
News:
New in DiffBind: dba.plotProfile() - Peak profiles and profile heatmaps
DiffBind
ChIP-seq
deepTools
visualization
ATAC-seq
4 months ago by
Rory Stark
★ 1.6k
17
votes
7
replies
8.4k
views
News:
Upcoming NGS Workshop: A Beginner's Guide to NGS Data Analysis
workshop
Assembly
transcriptomics
RNA-Seq
updated 10 months ago by
Ram
37k • written 8.2 years ago by
David Langenberger
9.8k
6
votes
7
replies
4.7k
views
News:
Illumina Nextseq 500 And Hiseq X Ten: Newer Tech Lowering Cost Per Mbp
News
updated 16 months ago by
Ram
37k • written 9.0 years ago by
support
▴ 640
10
votes
7
replies
1.6k
views
News:
Linux for Biologists e-book (free to read online)
linux
python
galaxy
conda
virtual-machine
16 months ago by
vimalkvn
▴ 310
21
votes
7
replies
7.0k
views
News:
Survey: Rna-Seq Analysis For Differential Gene/Transcript Expression [Updated With Results]
rna-seq
alignment
differential
gene
transcript
News
10.2 years ago by
bodhisattvax
▴ 250
1,000 results • Page
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Recent Votes
Comment: a problem with getBM
C: Reorder heatmap rows in a dataset with missing values
A: Difference between GTF file with CHR and without CHR. ENSEMBL
Answer: Base recalibration in normal vs. tumor somatic variant calling in WXS data?
A: from .BAM to .BAI using samtools
Comment: bgzip error 4
Answer: Gene Set Enrichment Analysis, pathway, metabolism
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Teacher
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ATpoint
68k
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tianshenbio
▴ 160
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maxdlf12
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Answer: how to do a reliable single cell sequencing analysis?
by
ATpoint
68k
The usual approach for starters would be to follow guided and well-accepted tutorials. That would (incomplete list) be: - The Biocon…
Answer: a problem with getBM
by
sanaz
• 0
head(ensembl_ids) X baseMean log2FoldChange lfcSE stat pvalue padj 1 ENSG00000000938.13 1344.2587 2.107…
Answer: Recommendations needed for a tool for comparative gene set enrichment analyses v
by
fuellen
▴ 20
Hello and Thanks! OK, I should have written "The gene lists I have prepared" instead of "The DEG lists I have prepared". In any case, is …
Comment: a problem with getBM
by
Mike Smith
★ 1.9k
Can you update your post to show some examples of what's in your `ensembl_ids` object? Perhaps the contents of `head(ensembl_ids)`. It's …
Answer: trainGlimmerHMM Error while training a genome
by
congliu37
• 0
Hello, I got the same error using ~20,000 genes for training and it was solved by reducing training gene set. I assume GlimmerHMM was no…
Comment: How to Calulate Allele Frequency from a VCF File?
by
Jeremy Leipzig
21k
That's correct. You don't have biallelic alleles in mitochondria, so you can use either the Allele depth (AD) or depth of coverage (DP) for…
Comment: How to calculate tumor mutation burden (TMB)?
by
Fabio Marroni
★ 2.9k
I just published a [post][1] on my blog, in which I include a simple R function for computing TMB. Try to see if that helps. I followed the…
Comment: Gene Set Enrichment Analysis, pathway, metabolism
by
Rob
▴ 160
Thank you FrankStarling, ATpoint, jv, these were so helpful.
Comment: translate CDS to prot formatted with nt nubers
by
Pierre Lindenbaum
152k
> with nucleotide numbers and DNA/prot aligned line by line what does it mean ? Create a Minimal, Reproducible Example to enable others t…
Comment: How to translate CDS to an amino acid sequence
by
vvasta
• 0
I tried several of the online DNA translation tools but have not found one that would output DNA/prot alignment with nucleotide number w…
Comment: How possible deadlocks are there while migrating from MYISAM to InnoDb?
by
Pierre Lindenbaum
152k
but you already knew it. https://www.biostars.org/p/9551097/#9551098
Comment: How possible deadlocks are there while migrating from MYISAM to InnoDb?
by
Pierre Lindenbaum
152k
your question is not related to bioinformatics. Ask stackoverflow.com.
Comment: Statistical test for checking cis regulation?
by
Fabio Marroni
★ 2.9k
Hi lumos. It is not very clear to me what kind of information are you using for the test and how are you measuring cis-regulation. Are you …
Comment: Error 134 while aligning using hisat2
by
Fabio Marroni
★ 2.9k
Other instances of the same error were indeed related to disk [space][1]. Can you post the output of the command: `df -h /bams/`? Another p…
Comment: **Error: unable to open file or unable to determine types for file**
by
Pierre Lindenbaum
152k
``` Please ensure that your file is TAB delimited (e.g., cat -t FILE). - Also ensure that your file has integer chromosome coordinates in t…
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