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Recent Replies
Comment: alignment result
by
ahmad.sajad4541
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Thank you so much. Should i proceed for annotation step?
Comment: PCA plot (Suggestions Needed)
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The code you already posted in the bioconductor board had simulated data, and the PCA image is the same.
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Unfortunately, it's not working for me either, and the web site doesn't exist anymore. You might try reaching out to the authors, but I kn…
Answer: How could I generate a gi_taxid_nucl.dmp file similar to the one previously host
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ZhangYuanfeng
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JUST GIVE THE ANSWER! Here is the solution:
```bash
aria2c -c -s 4 -j 4 \
https://ftp.ncbi.nlm.nih.gov/pub/taxonomy/accession2taxid/pd…
Comment: Why cd-hit-est not work when sequence identity threshold<0.95？
by
Dateline
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So, why? I have 18GB of data, and when -c=0.95, the run ends in about two days, while when -c=0.9, it has been three days and only a little…
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Hi, you can take the list of GSEA pathways and then use these via GSVA (https://github.com/rcastelo/GSVA) to create a heatmap.
You hav…
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You will have to elaborate on what is the error
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Hi GenoMax and Mensur Dlakic, thank you for your feedback. I'm changing approach in the way to work with a smaller number of seq.
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duplicate of your previous question: https://www.biostars.org/p/9592646/
why using R when there are shell-based tools like VEP ? slivar , …
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I am trying to install the software but I didn't find the way to clone from github. Could you help me with the pipeline of instruction…
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I think both these programs are just adding the same tag to every line. I don't think either cares whether it's called RG or CB
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Even if this was real data, the tiny numbers for the PC1 and PC2 indicate that the differences between the samples are all absolutely tiny.…
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Thanks for the input. I'll continue to think of more ideas that may be achievable.
Comment: PCA plot (Suggestions Needed)
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You could also try kernel PCA, which is a non-linear form of PCA, although this will be more time-consuming.
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