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1,000 results • Page
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News:
Beyond pest control: What can we learn from parasites?
docking
heme
parasitism
in-silico
updated 10 months ago by
Ram
43k • written 5.0 years ago by
Michael
54k
38
votes
7
replies
2.2k
views
News:
2 last seats available - 7th Berlin Summer School in NGS Data Analysis (September 4-8 in Berlin)
Transcriptomics
DNA-Seq
Variant-Calling
RNA-Seq
8 months ago by
David Langenberger
11k
6
votes
7
replies
4.1k
views
News:
New in DiffBind: dba.plotProfile() - Peak profiles and profile heatmaps
DiffBind
ChIP-seq
deepTools
visualization
ATAC-seq
18 months ago by
Rory Stark
★ 2.0k
17
votes
7
replies
9.0k
views
News:
Upcoming NGS Workshop: A Beginner's Guide to NGS Data Analysis
workshop
Assembly
transcriptomics
RNA-Seq
updated 2.1 years ago by
Ram
43k • written 9.4 years ago by
David Langenberger
11k
23
votes
7
replies
4.5k
views
News:
Research accounts on GitHub
github
git
updated 12 months ago by
Ram
43k • written 9.9 years ago by
Pierre Lindenbaum
160k
6
votes
7
replies
5.3k
views
News:
Illumina Nextseq 500 And Hiseq X Ten: Newer Tech Lowering Cost Per Mbp
Illumina
updated 13 months ago by
Ram
43k • written 10.2 years ago by
support
▴ 640
6
votes
7
replies
2.2k
views
News:
NCBI wants to remove quality scores from SRA
quality-scores
trimming
Assembly
genome
SRA
updated 9 months ago by
Ram
43k • written 3.7 years ago by
zhousun21
▴ 40
8
votes
6
replies
4.0k
views
News:
Last Call: Upcoming Workshop - Rna-Seq Bioinformatics: A Practical Introduction
RNA-seq
updated 13 months ago by
Ram
43k • written 11.2 years ago by
David Langenberger
11k
32
votes
6
replies
13k
views
7 follow
News:
Ncbi Releases Entrez Direct, The Entrez Utilities On The Unix Command Line
ncbi
genbank
pubmed
command-line
entrez
updated 13 months ago by
Ram
43k • written 10.1 years ago by
Pierre Lindenbaum
160k
9
votes
6
replies
2.1k
views
News:
No more hidden solutions in bioinformatics
precision-medicine
genome-sequencing
updated 14 months ago by
Ram
43k • written 8.9 years ago by
HG
★ 1.2k
17
votes
6
replies
8.9k
views
News:
Final registration deadline: September 15th - Bioinformatics Hands-On NGS Data Analysis Workshops 2014
methylation
RNA-seq
updated 12 months ago by
Ram
43k • written 10.0 years ago by
David Langenberger
11k
2
votes
6
replies
2.9k
views
News:
Master in integrated systems biology / Luxembourg
systems-biology
Masters-course
updated 10 months ago by
Ram
43k • written 6.7 years ago by
Rainer
▴ 130
8
votes
6
replies
17k
views
News:
Bioinformatics PhD Programs in the US
education
PhD
updated 10 months ago by
Ram
43k • written 6.3 years ago by
Ahmed Youssef
▴ 70
3
votes
6
replies
2.6k
views
News:
Brief Getting Started with Broad Firecloud tutorial posted
RNA-Seq
updated 11 months ago by
Ram
43k • written 7.8 years ago by
Sean Davis
26k
14
votes
6
replies
7.0k
views
News:
FINAL CALL: NGS Workshop - A Beginner's Guide to NGS Data Analysis (2 last seats)
NGS
RNA-Seq
workshop
updated 15 months ago by
Ram
43k • written 8.7 years ago by
David Langenberger
11k
1
vote
6
replies
1.1k
views
News:
Course - FLOW CYTOMETRY ANALYSIS WITH R/BIOCONDUCTOR
Bioconductor
FlowCytometry
R
updated 14 months ago by
synat.keam
▴ 100 • written 15 months ago by
carlopecoraro2
★ 2.4k
8
votes
6
replies
1.4k
views
News:
Illumina to Acquire Pacific Biosciences
pacbio
illumina
updated 10 months ago by
Ram
43k • written 5.4 years ago by
Istvan Albert
100k
9
votes
5
replies
8.7k
views
News:
A New Rest Based Api For Kegg: Kyoto Encyclopedia Of Genes And Genomes
kegg
api
updated 13 months ago by
Ram
43k • written 11.4 years ago by
wchknudt
▴ 50
9
votes
5
replies
10k
views
8 follow
News:
Online course: Learn Bioinformatics in 100 hours
biostars
online-course
updated 13 months ago by
Ram
43k • written 6.6 years ago by
Istvan Albert
100k
1
vote
5
replies
1.1k
views
News:
Cancer Genomics course - 2 seats left
Genomics
Cancer-Genomics
R
updated 14 months ago by
Ram
43k • written 14 months ago by
carlopecoraro2
★ 2.4k
7
votes
5
replies
2.5k
views
News:
Physalia-Course: Introduction to Linux and workflows for biologists (Berlin)
next-gen
Unix
Assembly
alignment
updated 10 months ago by
Ram
43k • written 7.0 years ago by
carlopecoraro2
★ 2.4k
3
votes
5
replies
1.2k
views
News:
Ensembl Release 104 and newer GTF files no longer have genes sorted by position
Ensembl
GTF
updated 6 months ago by
alejandrogzi
▴ 120 • written 16 months ago by
dlaehnemann
▴ 30
9
votes
5
replies
3.0k
views
News:
The NIH Software Discovery Index | We invite your comments
NIH
software-catalog
updated 2.2 years ago by
Ram
43k • written 9.5 years ago by
Sean Davis
26k
0
votes
5
replies
2.0k
views
News:
Ashg 2012 Biostar Meetup
ASHG
updated 13 months ago by
Ram
43k • written 11.4 years ago by
Zev.Kronenberg
12k
33
votes
5
replies
3.7k
views
News:
FINAL CALL: Epigenetics Workshop - DNA Methylation Data Analysis (some last seats available)
Epigenetics
Workshop
Bisulfite-Sequencing
updated 11 months ago by
Ram
43k • written 7.8 years ago by
Adele Feuerstein
▴ 460
3
votes
5
replies
2.2k
views
News:
Published: GeneSCF: a real-time based functional enrichment tool with support for multiple organisms
kegg
gene-enrichment
cancer
gene-ontology
updated 11 months ago by
Ram
43k • written 7.5 years ago by
EagleEye
7.5k
0
votes
5
replies
1.6k
views
News:
LAST CALL - 'Introduction to NGS Data Analysis' course in Berlin, October 8-10 2018
NGS
training
RNA-Seq
DNA-Seq
updated 10 months ago by
Ram
43k • written 5.8 years ago by
David Langenberger
11k
3
votes
5
replies
2.2k
views
News:
(18 August - "Enzyme Stability Prediction") A free webinar on on-going CAFA5 (Critical Assessment of Functional Annotation of proteins) challenge
gene-ontology
CAFA
protein
7 months ago by
Alexander
▴ 200
9
votes
5
replies
3.6k
views
News:
SAMTOOLS 1.4 released
samtools
updated 10 months ago by
Ram
43k • written 7.0 years ago by
Pierre Lindenbaum
160k
14
votes
5
replies
3.3k
views
News:
Science Article On Social Influence Bias On Voting Patterns ("Herding") With Impact On Biostar.
meta
biostars
updated 13 months ago by
Ram
43k • written 10.6 years ago by
Michael
54k
0
votes
5
replies
2.6k
views
News:
Workshop: Data manipulation and visualization with Python
next-gen
genome
SNP
sequence
updated 11 months ago by
Ram
43k • written 7.4 years ago by
carlopecoraro2
★ 2.4k
4
votes
5
replies
2.8k
views
News:
Kover will provide support via Biostars
kmer
kover
machine-learning
updated 11 months ago by
Ram
43k • written 7.8 years ago by
Alexandre Drouin
▴ 90
6
votes
5
replies
5.3k
views
News:
NCBI MagicBlast ( Short read mapper )
blast
ncbi
short-read
mapper
hts
updated 11 months ago by
Ram
43k • written 7.6 years ago by
Pierre Lindenbaum
160k
12
votes
4
replies
2.0k
views
News:
#NGSchool2018 summer school in bioinformatics
NGSchool
Personalised-Medicine
Nanopore
updated 10 months ago by
Ram
43k • written 5.8 years ago by
kzkedzierska
▴ 290
9
votes
4
replies
1.5k
views
News:
Human Cell Atlas Data Coordination Platform Data Release Questionaire
RNA-Seq
updated 10 months ago by
Ram
43k • written 6.1 years ago by
Laura
★ 1.8k
6
votes
4
replies
1.6k
views
News:
Genomic variation course at the EBI - Updated
Ensembl
1000Genomes
snps
variation
updated 11 months ago by
Ram
43k • written 8.0 years ago by
Emily
23k
14
votes
4
replies
3.4k
views
News:
FULL: NGS Data Analysis Workshop for Beginners in Munich (29 June - 1 Juli 2016)
RNA-Seq
next-gen
NGS
updated 20 months ago by
Ram
43k • written 8.1 years ago by
David Langenberger
11k
7
votes
4
replies
2.7k
views
News:
Boston Ma Us Area Folks: Software Carpentry Workshop For Women In Science Coming Up
python
training
updated 13 months ago by
Ram
43k • written 11.0 years ago by
Mary
11k
2
votes
4
replies
1.1k
views
News:
Course ONLINE - RNAseq data analysis with R and Bioconductor (15-19 June)
R
RNA-seq
Bioconductor
updated 9 months ago by
Ram
43k • written 3.9 years ago by
carlopecoraro2
★ 2.4k
4
votes
4
replies
2.9k
views
News:
Join The Dnanexus Developer Program
api
cloud
updated 13 months ago by
Ram
43k • written 10.8 years ago by
akislyuk
▴ 30
9
votes
4
replies
3.7k
views
News:
Conference Announcement - Camda 2013
conference
classification
updated 13 months ago by
Ram
43k • written 11.2 years ago by
okko.clevert
▴ 240
3
votes
4
replies
2.3k
views
News:
Training in Metagenomics Data Analysis @NIH, USA, Nov 14 - 17, 2017
metagenomics
microbiome
training
updated 11 months ago by
Ram
43k • written 7.5 years ago by
AABI
▴ 130
15
votes
4
replies
2.6k
views
News:
Call For Nominations: 2013 Benjamin Franklin Award
benjamin-franklin-award
award
updated 13 months ago by
Ram
43k • written 11.1 years ago by
Pierre Lindenbaum
160k
1
vote
4
replies
2.0k
views
News:
webserver of TCGA data www.tcgaportal.org
genome
RNA-Seq
TCGA
gene
updated 10 months ago by
Ram
43k • written 5.8 years ago by
xushutan
▴ 40
9
votes
4
replies
2.4k
views
7 follow
News:
fastp 0.22 released, with new FASTQ deduplication feature.
fastp
updated 8 months ago by
Ram
43k • written 2.6 years ago by
chen
★ 2.5k
19
votes
4
replies
2.4k
views
News:
How to analyze NGS data: An overview of nine different IT solutions
NGS
RNA-Seq
DNA-Seq
updated 11 months ago by
Ram
43k • written 7.4 years ago by
David Langenberger
11k
10
votes
4
replies
949
views
News:
Good morning
good
morning
updated 18 months ago by
Istvan Albert
100k • written 18 months ago by
Kevin Blighe
87k
10
votes
4
replies
1.7k
views
News:
3rd Berlin Summer School in NGS Data Analysis (2 seats just became available)
NGS
RNA-Seq
DNA-Seq
updated 10 months ago by
Ram
43k • written 5.2 years ago by
David Langenberger
11k
4
votes
4
replies
1.8k
views
News:
12th International Conference on Advancements in Bioinformatics and Drug Discovery
genome
Computational-Biology
updated 10 months ago by
Ram
43k • written 5.9 years ago by
bioinformatics
▴ 20
10
votes
4
replies
2.6k
views
News:
Ensembl 77 is out
ensembl
updated 2.2 years ago by
Ram
43k • written 9.5 years ago by
Emily
23k
1,000 results • Page
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Recent Votes
Comment: Gene reads all zero for each sample
Synthetic lethality and cancer database
Answer: log2(TPM+1)
Comment: Error in openning FastQC
Comment: F*up Night style events for Bioinformatics ? Comment if you're interested!
Answer: F*up Night style events for Bioinformatics ? Comment if you're interested!
Answer: F*up Night style events for Bioinformatics ? Comment if you're interested!
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Answer: Is RNAseq data from a monoclonal cell line technically considered scRNAseq?
by
Soheil
▴ 90
Bulk RNAseq from any sample is still considered a bulk sample. Running bulk RNA sequencing on a sample with any level of cell type/state c…
Comment: Is it reasonable to discard reads that show variation of quality across its leng
by
BRENO
• 0
Yikes. Well, this is from an Illumina MiniSeq. Sure, I will use alignment, but only to remove host reads. Then the remaining reads will go …
Comment: Is it reasonable to discard reads that show variation of quality across its leng
by
GenoMax
140k
This is going to be tough to diagnose. Are you going to align to a reference? If so go ahead with the alignments to see if alignments turn …
Comment: Is it reasonable to discard reads that show variation of quality across its leng
by
BRENO
• 0
Thank you for replying. I have separated the reads with at least one N on them and they account for 0.2% of the total reads in the file (8'…
Comment: Error running local blastn in R using system2
by
Mensur Dlakic
★ 26k
The `-db data/nt_euk` switch means that in your current directory you have a subdirectory called `data`, and all the `nt_euk` files are in …
Comment: Low number of both surviving reads after trimming
by
Jay
• 0
Thank you for your opinion. I will try with lower LEADING and TRAILING bases. By the way, I tried to set `keepBothReads:true` through sear…
Comment: Error in openning FastQC
by
GenoMax
140k
At this point it would be beneficial to learn some of the basics of command line. Please use this UNIX tutorial since you seem to be new to…
Comment: vcf file: number of samples does not match number of columns
by
Pierre Lindenbaum
160k
> ore or have any suggestions for fixing it? it's a problem with your upstream process. You'd better fix it.
Comment: Error in openning FastQC
by
friszd
• 0
after running fastqc -o output.html input.fastq, terminal returns: " Specified output directory 'output.html' does not exist " , when i run…
Comment: Is it reasonable to discard reads that show variation of quality across its leng
by
GenoMax
140k
The question you should be looking into is why the Q scores are dropping there? Are there `N` calls indicating some issue with that cycle?
Comment: Error in openning FastQC
by
GenoMax
140k
What is `ctrl+c ctrl+v`? You may actually be killing the running fastqc process. If you run `fastqc` interactively (like what was shown ab…
Comment: F*up Night style events for Bioinformatics ? Comment if you're interested!
by
Dave Carlson
★ 1.7k
Ugh. I've definitely done this one before as well. And was none too happy about it.
Comment: Error in openning FastQC
by
friszd
• 0
fastqc -o output.html input.fastq ctrl+c ctrl+v
Comment: Error running local blastn in R using system2
by
GenoMax
140k
What do you see if you `cat nt_euk.nal`? Do the number of pieces mentioned in that file match with what you locally have?
Comment: Low number of both surviving reads after trimming
by
GenoMax
140k
It is your data and if you want to do that it is up to you. You may be throwing away essentially good data (you should remove the nextera s…
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