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1,000 results • Page
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News:
NCBI wants to remove quality scores from SRA
SRA
quality scores
genome
Assembly
trimming
News
updated 2.7 years ago by
GenoMax
127k • written 2.7 years ago by
zhousun21
▴ 40
24
votes
7
replies
4.0k
views
News:
#Bioinformatics Crowdcoding
crowd-coding
updated 22 days ago by
Ram
38k • written 9.7 years ago by
Pierre Lindenbaum
153k
25
votes
7
replies
5.8k
views
News:
Pubmed Commons : A System That Enables Researchers To Share Their Opinions About Scientific Publications
ncbi
pubmed
updated 20 days ago by
Ram
38k • written 9.4 years ago by
Pierre Lindenbaum
153k
21
votes
7
replies
7.1k
views
News:
Survey: Rna-Seq Analysis For Differential Gene/Transcript Expression [Updated With Results]
transcript
RNA-seq
gene
updated 26 days ago by
Ram
38k • written 10.3 years ago by
bodhisattvax
▴ 250
2
votes
7
replies
1.3k
views
News:
Beyond pest control: What can we learn from parasites?
parasitism
heme
in silico
docking
News
4.0 years ago by
Michael Dondrup
52k
32
votes
6
replies
12k
views
7 follow
News:
Ncbi Releases Entrez Direct, The Entrez Utilities On The Unix Command Line
ncbi
genbank
pubmed
command-line
entrez
updated 19 days ago by
Ram
38k • written 9.1 years ago by
Pierre Lindenbaum
153k
1
vote
6
replies
676
views
News:
Course - FLOW CYTOMETRY ANALYSIS WITH R/BIOCONDUCTOR
Bioconductor
FlowCytometry
R
updated 9 weeks ago by
synat.keam
▴ 70 • written 3 months ago by
carlopecoraro2
★ 2.3k
2
votes
6
replies
2.3k
views
News:
Master in integrated systems biology / Luxembourg
Master course
bioinformatics
systems biology
News
5.7 years ago by
Rainer
▴ 130
8
votes
6
replies
1.1k
views
News:
Illumina to Acquire Pacific Biosciences
illumina
pacbio
News
4.4 years ago by
Istvan Albert
96k
9
votes
6
replies
1.8k
views
News:
No more hidden solutions in bioinformatics
precision-medicine
genome-sequencing
updated 8 weeks ago by
Ram
38k • written 7.8 years ago by
HG
★ 1.2k
17
votes
6
replies
8.4k
views
News:
Final registration deadline: September 15th - Bioinformatics Hands-On NGS Data Analysis Workshops 2014
methylation
RNA-seq
updated 15 days ago by
Ram
38k • written 9.0 years ago by
David Langenberger
9.9k
3
votes
6
replies
2.3k
views
News:
Brief Getting Started with Broad Firecloud tutorial posted
RNA-Seq
News
6.7 years ago by
Sean Davis
26k
8
votes
6
replies
16k
views
News:
Bioinformatics PhD Programs in the US
education
PhD
News
4.0 years ago by
Ahmed Youssef
▴ 70
14
votes
6
replies
6.5k
views
News:
FINAL CALL: NGS Workshop - A Beginner's Guide to NGS Data Analysis (2 last seats)
NGS
RNA-Seq
workshop
updated 3 months ago by
Ram
38k • written 7.7 years ago by
David Langenberger
9.9k
8
votes
6
replies
3.7k
views
News:
Last Call: Upcoming Workshop - Rna-Seq Bioinformatics: A Practical Introduction
RNA-seq
updated 26 days ago by
Ram
38k • written 10.2 years ago by
David Langenberger
9.9k
3
votes
5
replies
1.9k
views
News:
Published: GeneSCF: a real-time based functional enrichment tool with support for multiple organisms
tool
kegg
geneontology
cancer
geneenrichment
News
updated 6.5 years ago by
Mike
★ 1.8k • written 6.5 years ago by
EagleEye
7.4k
9
votes
5
replies
2.7k
views
News:
The NIH Software Discovery Index | We invite your comments
NIH
software-catalog
updated 14 months ago by
Ram
38k • written 8.5 years ago by
Sean Davis
26k
0
votes
5
replies
1.3k
views
News:
LAST CALL - 'Introduction to NGS Data Analysis' course in Berlin, October 8-10 2018
NGS
training
DNA-Seq
RNA-Seq
News
4.8 years ago by
David Langenberger
9.9k
14
votes
5
replies
3.0k
views
News:
Science Article On Social Influence Bias On Voting Patterns ("Herding") With Impact On Biostar.
meta
biostars
updated 5 weeks ago by
Ram
38k • written 9.6 years ago by
Michael Dondrup
52k
0
votes
5
replies
2.3k
views
News:
Workshop: Data manipulation and visualization with Python
next-gen
sequence
genome
SNP
News
6.3 years ago by
carlopecoraro2
★ 2.3k
6
votes
5
replies
4.7k
views
News:
NCBI MagicBlast ( Short read mapper )
ncbi
blast
hts
mapper
shortread
News
6.5 years ago by
Pierre Lindenbaum
153k
9
votes
5
replies
9.6k
views
8 follow
News:
Online course: Learn Bioinformatics in 100 hours
biostars
online-course
updated 5 weeks ago by
Ram
38k • written 5.6 years ago by
Istvan Albert
96k
4
votes
5
replies
2.4k
views
News:
Kover will provide support via Biostars
kover
kmer
machine learning
news
News
updated 6.2 years ago by
hfan22
▴ 40 • written 6.8 years ago by
Alexandre Drouin
▴ 90
9
votes
5
replies
8.2k
views
News:
A New Rest Based Api For Kegg: Kyoto Encyclopedia Of Genes And Genomes
kegg
api
updated 26 days ago by
Ram
38k • written 10.3 years ago by
wchknudt
▴ 50
9
votes
5
replies
3.2k
views
News:
SAMTOOLS 1.4 released
samtools
News
6.0 years ago by
Pierre Lindenbaum
153k
7
votes
5
replies
2.2k
views
News:
Physalia-Course: Introduction to Linux and workflows for biologists (Berlin)
Assembly
next-gen
alignment
Unix
News
6.0 years ago by
carlopecoraro2
★ 2.3k
1
vote
5
replies
660
views
News:
Cancer Genomics course - 2 seats left
Genomics
Cancer-Genomics
R
updated 6 weeks ago by
Ram
38k • written 10 weeks ago by
carlopecoraro2
★ 2.3k
0
votes
5
replies
1.8k
views
News:
Ashg 2012 Biostar Meetup
ASHG
updated 26 days ago by
Ram
38k • written 10.4 years ago by
Zev.Kronenberg
12k
33
votes
5
replies
3.3k
views
News:
FINAL CALL: Epigenetics Workshop - DNA Methylation Data Analysis (some last seats available)
Workshop
Epigenetics
Bisulfite Sequencing
News
updated 6.4 years ago by
David Langenberger
9.9k • written 6.8 years ago by
Adele Feuerstein
▴ 460
3
votes
4
replies
2.0k
views
News:
Training in Metagenomics Data Analysis @NIH, USA, Nov 14 - 17, 2017
metagenomics
training
microbiome
News
5.4 years ago by
AABI
▴ 130
1
vote
4
replies
1.8k
views
News:
webserver of TCGA data www.tcgaportal.org
RNA-Seq
gene
rna-seq
genome
News
4.8 years ago by
xushutan
▴ 40
15
votes
4
replies
2.3k
views
News:
Call For Nominations: 2013 Benjamin Franklin Award
benjamin-franklin-award
award
updated 26 days ago by
Ram
38k • written 10.1 years ago by
Pierre Lindenbaum
153k
7
votes
4
replies
2.4k
views
News:
Boston Ma Us Area Folks: Software Carpentry Workshop For Women In Science Coming Up
python
training
updated 26 days ago by
Ram
38k • written 10.0 years ago by
Mary
11k
4
votes
4
replies
1.4k
views
News:
VCFclin working group
vcfclin
updated 15 days ago by
Ram
38k • written 8.9 years ago by
keilbeck
▴ 30
0
votes
4
replies
783
views
News:
Pan-Structural Variation hackathon in the Cloud!
sequencing
SV
Forum
News
3.1 years ago by
Medhat
9.5k
6
votes
4
replies
1.4k
views
News:
Genomic variation course at the EBI - Updated
variation
1000 Genomes
Ensembl
snps
News
6.9 years ago by
Emily
23k
10
votes
4
replies
1.4k
views
News:
3rd Berlin Summer School in NGS Data Analysis (2 seats just became available)
NGS
RNA-Seq
DNA-Seq
News
4.2 years ago by
David Langenberger
9.9k
31
votes
4
replies
6.1k
views
News:
Rosalind: A Novel Bioinformatics Education Platform
education
updated 27 days ago by
Ram
38k • written 10.5 years ago by
phcompeau
▴ 310
1
vote
4
replies
1.5k
views
News:
Bioconductor Development Visualization
bioconductor
updated 8 months ago by
Ram
38k • written 7.9 years ago by
Sean Davis
26k
4
votes
4
replies
1.5k
views
News:
12th International Conference on Advancements in Bioinformatics and Drug Discovery
genome
bioinformatics
Computational Biology
News
updated 4.5 years ago by
cdsouthan
★ 1.9k • written 4.9 years ago by
bioinformatics
▴ 20
4
votes
4
replies
2.6k
views
News:
Join The Dnanexus Developer Program
api
cloud
updated 22 days ago by
Ram
38k • written 9.8 years ago by
akislyuk
▴ 30
2
votes
4
replies
1.1k
views
News:
Online training - Snakemake: Reproducible and Scalable Bioinformatic Workflows
Snakemake
Pipeline
15 months ago by
carlopecoraro2
★ 2.3k
10
votes
4
replies
571
views
News:
RNA-Seq Data Analysis Workshop - Join us in Berlin, Germany from March 27-30, 2023!
NGS
transcriptomics
workshop
updated 5 days ago by
kng
▴ 30 • written 6 weeks ago by
David Langenberger
9.9k
9
votes
4
replies
3.4k
views
News:
Conference Announcement - Camda 2013
conference
classification
updated 26 days ago by
Ram
38k • written 10.2 years ago by
okko.clevert
▴ 240
6
votes
4
replies
808
views
News:
Upcoming online training courses
Python
R
19 months ago by
carlopecoraro2
★ 2.3k
8
votes
4
replies
1.6k
views
News:
supporting vg users on biostars
vg
graph
vgteam
genome
News
variation
updated 3 months ago by
colindaven
4.5k • written 3.5 years ago by
Erik Garrison
★ 2.3k
9
votes
4
replies
1.3k
views
News:
Human Cell Atlas Data Coordination Platform Data Release Questionaire
RNA-Seq
News
5.1 years ago by
Laura
★ 1.8k
2
votes
4
replies
1.7k
views
News:
Reminder: Igb Tutorial Starts In 30 Minutes
visualization
genome-browser
RNA-seq
updated 21 days ago by
Ram
38k • written 9.5 years ago by
Ann
★ 2.3k
0
votes
4
replies
1.8k
views
News:
What NGS courses would you like us to prepare for 2016? (one week left)
NGS
Survey
Workshop
updated 7 months ago by
Ram
38k • written 7.3 years ago by
David Langenberger
9.9k
14
votes
4
replies
3.0k
views
News:
FULL: NGS Data Analysis Workshop for Beginners in Munich (29 June - 1 Juli 2016)
RNA-Seq
next-gen
NGS
updated 8 months ago by
Ram
38k • written 7.1 years ago by
David Langenberger
9.9k
1,000 results • Page
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Answer: RPKM and FPKM quality control check and filtration
A: Decoy In Reference Assembly
A: Where Can I Download Human Reference Genome In Fasta Format? Hgref.Fa File
Comment: Plot in R: Presence of bacteria type A vs bacteria type B in different groups
Answer: Fastqc report analysis
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Comment: Snakemake vs Nextflow Upcoming bioinformatics Project
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Comment: My fastq files(paired end) have different read number
by
kimgeng
• 0
Oh, I see, Thank you however, I want to make vcf files with gatk haplotypecaller and GenotypeGVCFs. But I got some problems I have about 2.…
Answer: My fastq files(paired end) have different read number
by
ntsopoul
▴ 20
Yes, this is normal because depending on how you generate the bam file, the non-aligning reads are saved in the .bam file along the properl…
Answer: Can I use abundance from Tximport to compare the expression level of transcript
by
ntsopoul
▴ 20
No, you should not do that since the count matrix is not normalized. Also, the statistics for getting a pValue requires consideration of al…
Comment: Easy way to split VCF file by chromosome
by
Joana
• 0
You need to run bcftools index on your vcf file before running the suggested command.
Comment: Fastqc report analysis
by
ntsopoul
▴ 20
I think you are fine, no worries. Will you go ahead an align the fastq files to a genome? Do you know how?
Comment: Fastqc report analysis
by
npavliukovec
• 0
Thanks for your answer, it really helped me. Also, I added --illumina options, because then I checked MultiQC report for all of my samples …
Answer: Fastqc report analysis
by
ntsopoul
▴ 20
Hi there, Cool that you learn to do these things and welcome to the bioinformatic community. In my opinion, both of the reports look to h…
Comment: Creating loop for read groups using Picard
by
Pierre Lindenbaum
153k
duplicate of https://www.biostars.org/p/9558127/
Comment: ClusterProfiler enrichKEGG – remove organism name in plots?
by
Mensur Dlakic
★ 23k
Is there a problem in using program version that produced your top plot? Unless there is known bug in a program, or a super-useful feature…
Answer: Need help teasing out insertions and deletions with bcftools stats file.vcf > fi
by
Afif Elghraoui
• 0
Not in one step that I could find, but this works: deletions: ``` bcftools view --types indels --include 'ILEN<0' file.vcf | bcftools …
Comment: How to add gene information below the BSmooth result ?
by
diqixiaoyaoer
▴ 10
Thank you, sir. I have looked into your thesis. It's really great. I may have a try on Gviz if I don't have any idea about my question.
Comment: Snakemake vs Nextflow Upcoming bioinformatics Project
by
rackbersingh
• 0
Brilliant, thanks for the advice, i think after looking into what the community has said I have invested into learning the groovy language …
Comment: How can I easily remove overlapping transcripts, keeping only longest transcript
by
Juke34
7.7k
Change merge_loci to true
Comment: msigdbr returns the same genesets for mouse as in for human,
by
igor
13k
The addition of mouse-specific pathways to MSigDB is relatively recent. The package has not been updated to incorporate the latest version …
Comment: known-sites for Felis_catus_9.0 (GCA_000181335.4)
by
makarov
• 0
Thank you, I also found vcf files https://ftp.ensembl.org/pub/release-109/variation/vcf/felis_catus/
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