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Yes, definitely lots of noise and few peaks for such an experiment. Which celltype is that, and which lab protocol did you use?
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What do you mean by gene lists?
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Thank you so much for your responses.
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I think you could try doing this, but it wouldn't be appropriate. You'd be bringing long-read errors, which I believe are higher than short…
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I divided my contigs using R, but it was more complex than the program Pierre Lindenbaum made (https://jvarkit.readthedocs.io/en/latest/Vcf…
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Just wait until it is finished. It's seems to be running. I just checked my logs and on our HPC with four cores such as process for a decoy…
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