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News: Summary of AGBT 2015
AGBT2015 AGBT
updated 10 days ago by 38k • written 8.1 years ago by ▴ 640
2
votes
2
replies
2.4k
views
News: ENCODE 2015: Research Applications and Users Meeting
workshop mouse-encode encode
updated 5 days ago by 38k • written 7.8 years ago by 34k
1
vote
2
replies
357
views
News: Gene Set Enrichment Analysis in R/Bioconductor
Gene-Set-Enrichment-Analysis R Cancer-Genomics GSEA
4 months ago by carlopecoraro2 ★ 2.3k
3
votes
2
replies
2.8k
views
News: Bioinformatics On Windows And Windows Cloud
windows cloud
updated 4 weeks ago by 38k • written 10.4 years ago by ▴ 20
1
vote
2
replies
367
views
News: Course: Network Analysis in R
NetworkAnalyis R
8 weeks ago by carlopecoraro2 ★ 2.3k
1
vote
2
replies
554
views
News: New chat server (Discord) for bioinformatics
community
10 weeks ago by Samuel Lampa ★ 1.3k
0
votes
2
replies
297
views
News: Course - Metagenomics, metatranscriptomics, and multi'omics for microbial community Studies
Metagenomics Metatranscriptomics Multiomics
updated 9 days ago by 38k • written 9 days ago by ★ 2.3k
0
votes
2
replies
1.4k
views
News: M.Phil Program in Bioinformatics
education career
updated 9 days ago by 38k • written 7.4 years ago by • 0
1
vote
1
reply
741
views
News: ONLINE TRAINING -GENOME ASSEMBLY USING OXFORD NANOPORE SEQUENCING
genome assembly Nanopore
updated 6 weeks ago by 38k • written 2.2 years ago by ★ 2.3k
3
votes
1
reply
2.5k
views
News: Ngs Session At Biocomp Bg 2012 Conference!
next-gen-sequencing
updated 4 weeks ago by 38k • written 10.9 years ago by ▴ 50
1
vote
1
reply
475
views
News: QC for Next Generation Sequencing
NGS QC
updated 17 days ago by 38k • written 17 months ago by • 0
5
votes
1
reply
2.7k
views
News: Canadian Bioinformatics Workshops Series Announced For 2014
training
updated 25 days ago by 38k • written 9.3 years ago by 20k
3
votes
1
reply
1.4k
views
News: Frederick Sanger ( 1918 - 2013 )
sanger-institute
updated 25 days ago by 38k • written 9.4 years ago by 153k
8
votes
1
reply
2.5k
views
News: An Interesting Article On Bioinformatics Education With Some Press For Biostar
meta biostars
updated 5 weeks ago by 38k • written 9.7 years ago by 11k
8
votes
1
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3.1k
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News: LAST DAY TO REGISTER - NGS Workshop 2015: A Practical Introduction to NGS Data Analysis (Oxford, UK)
RNA-Seq workshop
updated 17 days ago by 38k • written 8.4 years ago by 9.9k
0
votes
1
reply
374
views
News: API for accessing SARS-COV-2 genomic data
rpackage sars genomics api covid
updated 9 months ago by 127k • written 9 months ago by • 0
4
votes
1
reply
395
views
News: Online Course - A Practical Introduction to NGS Data Analysis (September 26-28, 2022)
workshop ngs data-analysis
updated 8 months ago by 38k • written 8 months ago by 9.9k
1
vote
1
reply
1.7k
views
News: 2013 Gmod Summer School - Now Accepting Applications!
galaxy
updated 4 weeks ago by 38k • written 9.9 years ago by ▴ 280
0
votes
1
reply
606
views
News: The NCBI Datasets command-line tool now provides ortholog data
ncbi gene json refseq
updated 6 weeks ago by 38k • written 2.1 years ago by ▴ 50
4
votes
1
reply
2.1k
views
News: ENCODE Users' Meeting
encode ucsc conference functional-genomics ensembl
updated 7 months ago by 38k • written 7.8 years ago by 23k
6
votes
1
reply
1.7k
views
News: Are protein domains indivisible?
Athropy Domains Proteins
updated 5 days ago by 38k • written 7.8 years ago by ★ 4.2k
2
votes
1
reply
2.5k
views
News: Workshop: Programming For Evolutionary Biology
programming RNA-seq
updated 4 weeks ago by 38k • written 10.2 years ago by 9.9k
1
vote
1
reply
1.2k
views
News: Genomic Medicine Meeting VIII: NHGRI's Genomic Medicine Portfolio; livestream June 8-9
precision-medicine
updated 11 weeks ago by 38k • written 7.8 years ago by 11k
0
votes
1
reply
869
views
News: Results are now Available for the precisionFDA Truth Challenge V2
genome
updated 6 weeks ago by 38k • written 2.6 years ago by ▴ 150
1
vote
1
reply
1.6k
views
News: Article: Crowdfunding Genomics And Bioinformatics
crowdfunding
updated 25 days ago by 38k • written 9.4 years ago by 8.2k
3
votes
1
reply
388
views
News: Free web seminars related to small non-coding RNA bioinformatics
smallRNA microRNA
updated 3 months ago by 38k • written 10 months ago by ▴ 60
5
votes
1
reply
2.4k
views
News: Advanced Course: R programming and development 15-16. January 2015 (Thursday-Friday), EMBL Heidelberg
programming course R
updated 17 days ago by 38k • written 8.4 years ago by ★ 1.7k
1
vote
1
reply
2.4k
views
News: Benefits of DNA Testing - Xcode Life sciences provides preventive healthcare solution
personal-genomics genetic-testing
updated 10 weeks ago by 38k • written 7.8 years ago by • 0
10
votes
1
reply
2.9k
views
News: Ucsc: Dna Sequences In Web Pages Indexed By Bing.Com / Microsoft Research (All Phenotype And Literature Tracks)
web ucsc
updated 24 days ago by 38k • written 9.2 years ago by 153k
2
votes
1
reply
1.6k
views
News: Us Researchers: Help Influence Stem Education With New Nsf Strategies (Deadline Next Tuesday)
education genomics
updated 24 days ago by 38k • written 9.2 years ago by 11k
1
vote
1
reply
2.2k
views
News: Bioinformatics for Cancer Genomics Workshop
Cancer-Genomics
updated 8 months ago by 38k • written 7.2 years ago by ▴ 30
3
votes
1
reply
2.3k
views
News: Variathon V0.1 - 2013 - Comparing Existing Or New Pipelines For Variant Calling In Terms Of Accuracy And Efficiency
ngs conference
updated 4 weeks ago by 38k • written 10.1 years ago by 153k
2
votes
1
reply
1.9k
views
News: Igb 8 Webinar Starts At 1 Pm Eastern
visualization genome-browser bam rna-seq
updated 26 days ago by 38k • written 9.4 years ago by ★ 2.3k
0
votes
1
reply
146
views
News: Courses in March. -still a few seats available
Bioconductor Genomics R
updated 5 weeks ago by 38k • written 5 weeks ago by ★ 2.3k
5
votes
1
reply
987
views
News: Paid opportunity: need microbiome experts for a survey and test of robustness
survey
updated 6 weeks ago by 38k • written 2.5 years ago by 21k
7
votes
1
reply
2.5k
views
News: Integrated Genome Browser version 8.3 released - new native installer
ChIP-Seq RNA-Seq igv igb
updated 11 months ago by 38k • written 8.2 years ago by ★ 2.3k
1
vote
1
reply
1.8k
views
News: 'Spring School 2013 - Epigenetics Of Civilization Diseases', May 27Th - 31St 2013, In Leipzig, Germany
epigenetics
updated 4 weeks ago by 38k • written 10.3 years ago by 9.9k
6
votes
1
reply
1.7k
views
News: Contest: Antibody Marathon Match Problem: ABCSpeedup
contest
updated 12 days ago by 38k • written 8.2 years ago by 153k
7
votes
1
reply
2.9k
views
News: A Multi-Split Mapping Algorithm For Circular Rna, Splicing, Trans-Splicing, And Fusion Detection
ngs mapping
updated 24 days ago by 38k • written 9.1 years ago by 9.9k
2
votes
1
reply
1.7k
views
News: Structure viewer for Ebola virus proteins
ebola structure
updated 17 days ago by 38k • written 8.4 years ago by ▴ 260
0
votes
1
reply
403
views
News: Sex Chromosome Evolution course
Genomics Sex-Chromosome-Evolution
updated 7 weeks ago by 38k • written 11 weeks ago by ★ 2.3k
1
vote
1
reply
1.6k
views
News: Igb Service Interruption - Backup Site Address
genome-browser RNA-seq
updated 25 days ago by 38k • written 9.4 years ago by ★ 2.3k
0
votes
1
reply
306
views
News: Courses in January - still a few seats available
R-Shiny Genomics Unix R
updated 7 weeks ago by 38k • written 3 months ago by ★ 2.3k
11
votes
1
reply
2.6k
views
News: NGS Data Analysis Workshop for Beginners in Munich (full)
RNA-Seq training NGS workshop
updated 8 months ago by 38k • written 6.7 years ago by 9.9k
0
votes
1
reply
3.0k
views
News: Call For Book Chapters: Big Data Analytics in Genomics (Springer USA)
Book-Chapter CFP
updated 7 months ago by 38k • written 7.4 years ago by ▴ 10
4
votes
1
reply
2.1k
views
News: 2014 ISCB Wikipedia Article Competition announcement
ISCB competition Wikipedia
written 8.6 years ago by ★ 2.0k
4
votes
1
reply
1.9k
views
News: Mark2Cure launches tool to help crowd-source curation of the biomedical literature
crowd-sourcing
updated 3 months ago by 38k • written 8.2 years ago by 20k
0
votes
1
reply
334
views
News: Introduction to Deep Learning course
DeepLearning MachineLearning bigdata
updated 11 months ago by 21k • written 11 months ago by ★ 2.3k
0
votes
1
reply
721
views
News: Hands-On RNA-Seq Data Analysis Workshop in Leipzig, Germany (October 25-28, 2022)
RNA-Seq Transcriptomics NGS Workshop
8 months ago by David Langenberger 9.9k
5
votes
1
reply
1.2k
views
News: Bioinformatics Contest 2017
Contest
updated 3 months ago by 38k • written 6.2 years ago by 7.0k
460 results • Page 3 of 10
Recent Votes
Answer: multiallelic variants
Answer: LIMMA calculates identical adj.P.Val for different proteins from proteomics
Comment: Hard clip fastq
Answer: Hard clip fastq
Answer: Hard clip fastq
Answer: Hard clip fastq
Comment: Protein name in GenBank
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Recent Replies
Answer: GetBM - GERP conservation score for GRCm39 by Kyle • 0
Final solution thanks to Ben's help:: snp_gr <-makeGRangesFromDataFrame(tester, seqnames.field = "seqnames", start.field = "start"…
Comment: GetBM - GERP conservation score for GRCm39 by Kyle • 0
Perfect answer, thanks Ben!
Answer: MapSplice2 gives error if the thread count (-p value) is greater than 2 by vishal.koparde ▴ 10
Any updates??
Comment: how to know what adapter sequences to trim for RNA-seq? by lunarskye222 • 0
Do you happen to know if the middle part of this udi barcode (GATCGGAAGAGCACACGTCTGAACTCCAGTCACGTCTACATATCTCG) is also part of the TruSeq a…
Comment: Hard clip fastq by GenoMax 127k
If you simply want the reads to be compatible in length then do not adapter trim.
Comment: Hard clip fastq by samuel ▴ 180
@ATpoint, so no adapter trimming first? Just trim the raw fastq?
Answer: Confused on strandedness, what are antisense transcripts? by dsull ★ 4.0k
RNA pol always transcribes 5' -> 3'. This has nothing to do with +/-. Think of it on the DNA level: If the mRNA made is the same sequenc…
Comment: Protein name in GenBank by GenoMax 127k
If you must do this programmatically then collect all cases where things differ in order of words (or number of words) like the example abo…
Answer: Hard clip fastq by GenoMax 127k
You can also use `reformat.sh` from [**BBMap suite**][1] as follows reformat.sh -Xmx2g in1=R1.fq.gz in2=R2.fq.gz out1=R1_trim.fq.gz …
Answer: Hard clip fastq by ATpoint 70k
Use `seqtk trimfq`. It makes sense to trim first to your desired length and then run identical downstream processing for a fair comparison.…
Comment: Protein name in GenBank by Mensur Dlakic ★ 23k
I think you either take time to do it properly, or you will end up missing some proteins. BLAST sequence search, even on 1500 genomes, can …
Comment: Log2 FC Threshold by ATpoint 70k
Since OP is using GEO2R which uses limma the appropriate function (need to run manually, GEO2R does not support) is `limma::treat()` rather…
Answer: Adding median value to VlnPlot in Seurat by Ming Tommy Tang ★ 2.9k
If you know ggplot2, you can `get_expression_data` function in here https://divingintogeneticsandgenomics.rbind.io/post/how-to-do-gene-corr…
Answer: how to know what adapter sequences to trim for RNA-seq? by Ming Tommy Tang ★ 2.9k
You may use fastp which detect adaptors by itself https://github.com/OpenGene/fastp#adapters
Answer: Variant Calling with Multiple Individuals in Freebayes by Ming Tommy Tang ★ 2.9k
It looks like you can provide multiple bam files and output a gVCF file https://github.com/freebayes/freebayes#usage
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