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News: Bioinformatics National Certification Examination (BINC)
BINC
updated 12 months ago by 43k • written 8.0 years ago by • 0
4
votes
3
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1.0k
views
News: You may need to cleanup duplicate NCBI BLAST nt database volumes on your system
databases NCBI BLAST
7 months ago by PeterC_NCBI ▴ 410
0
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3
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1.4k
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News: :: FINAL CALL :: A Practical Introduction to NGS Data Analysis (Nov 29 - Dec 1, 2023 in Munich, Germany) - only 2 seats left
DNA-Seq NGS RNA-Seq Workshop
5 months ago by David Langenberger 11k
0
votes
3
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2.3k
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News: Eukaryotic Metabarcoding workshop
next-gen blast alignment
updated 12 months ago by 43k • written 7.4 years ago by ★ 2.5k
15
votes
3
replies
6.9k
views
News: Top Bioinformatics Contributions Of 2013
bioinformatics
updated 13 months ago by 43k • written 10.4 years ago by ★ 1.1k
1
vote
3
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1.2k
views
News: 4th Berlin Summer School in NGS Data Analysis - October 5-9, 2020
NGS RNA-Seq DNA-Seq
updated 10 months ago by 43k • written 4.2 years ago by 11k
22
votes
3
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3.0k
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News: Biostar: 10,000 Question Milestone
meta
updated 13 months ago by 43k • written 10.9 years ago by 100k
4
votes
3
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2.2k
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News: India Recently Started Personal Genome Profiling, Commercially.
genome-profiling
updated 13 months ago by 43k • written 10.9 years ago by ▴ 990
6
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3
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2.4k
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News: Become a Professional Biinformatician in NGS, Microarray in very fair price. Register for ArrayGen training program as soon as possible to get good a…
ChIP-Seq next-gen RNA-Seq
updated 12 months ago by 43k • written 7.2 years ago by • 0
3
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3
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2.1k
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News: Workshop: Berlin. Data manipulation and visualization with Python. 13-17 March (Registration deadline is today!!)
next-gen RNA-Seq genome SNP
updated 12 months ago by 43k • written 7.2 years ago by ★ 2.5k
13
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2
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1.5k
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News: Thank you Biostars!
meta
updated 10 months ago by 43k • written 4.9 years ago by ▴ 140
11
votes
2
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2.4k
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News: Ensembl 76 is out
Genome-browser Ensembl
updated 2.3 years ago by 43k • written 9.7 years ago by 23k
0
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2
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710
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News: Seascape Genomics in R
Genomics Seascape R
updated 16 months ago by 43k • written 18 months ago by ★ 2.5k
2
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2
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2.6k
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News: Interview Dealing with RADseq data: some tips from our instructors
NGS RADseq
updated 11 months ago by 43k • written 6.5 years ago by ★ 2.5k
14
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2
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5.5k
views
News: Open Targets, identifying targets for drug development in the treatment of diseases.
database Drug open-targets
updated 12 months ago by 43k • written 7.8 years ago by ★ 5.2k
2
votes
2
replies
2.2k
views
News: 2017 NIH SUMMER INTERNSHIP PROGRAM IN BIOMEDICAL RESEARCH (SIP)--applications open
NIH training
updated 12 months ago by 43k • written 7.4 years ago by 26k
7
votes
2
replies
2.3k
views
News: Annotation of Zebrafish pri-miRNAs promoters and CAGE-seq detected active Drosha processing events.
Drosha-processing moRNAs pri-miRNAs zebrafish
updated 20 months ago by 43k • written 8.3 years ago by ★ 2.4k
12
votes
2
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1.5k
views
News: Free online Ensembl course, now with a fixed sign-up link
ensembl course training
updated 12 months ago by 43k • written 7.2 years ago by 23k
3
votes
2
replies
3.1k
views
News: Bioinformatics On Windows And Windows Cloud
windows cloud
updated 14 months ago by 43k • written 11.4 years ago by ▴ 20
1
vote
2
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1.7k
views
News: Workshop: Data analysis in high throughput biology. deadline today (2 places left)
next-gen R RNA-Seq
updated 11 months ago by 43k • written 7.0 years ago by ★ 2.5k
5
votes
2
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3.4k
views
News: Summary of AGBT 2015
AGBT2015 AGBT
updated 13 months ago by 43k • written 9.1 years ago by ▴ 650
5
votes
2
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917
views
News: The precisionFDA BioCompute Object App-a-thon has been extended to October 18!
BioCompute challenge
updated 10 months ago by 43k • written 4.8 years ago by ▴ 70
0
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2
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2.5k
views
News: MinION Community Meeting: Thursday Dec 3rd (now live)
minion
updated 20 months ago by 43k • written 8.4 years ago by 100k
4
votes
2
replies
2.9k
views
News: New ebook: From cell line to Command line to learn computational biology
unix snakemake computational-biology RNA-seq
5 months ago by Ming Tommy Tang ★ 3.9k
1
vote
2
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1.7k
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News: Webinar: Generating interpretable maps of single cell chromatin accessibility and RNA-seq datasets with Similarity Weighted Nonnegative Embedding
scRNAseq webinar rna-seq single-cell
updated 10 months ago by 43k • written 5.0 years ago by ▴ 580
6
votes
2
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1.1k
views
News: Temporarily reduced functionality of Ensembl and Ensembl Genomes
Ensembl
updated 10 months ago by 43k • written 5.2 years ago by ★ 2.4k
2
votes
2
replies
2.0k
views
News: Briefings In Bioinformatics International, Interdisciplinary, Multi-Level Bioinformatics Training And Education
education
updated 13 months ago by 43k • written 10.6 years ago by 161k
1
vote
2
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1.8k
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News: Making efficient NGS data analysis softwares - GATB-Core Library Tutorial
next-gen GATB
updated 12 months ago by 43k • written 7.6 years ago by ▴ 140
2
votes
2
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1.4k
views
News: GeNets: a unified web platform for network-based genomic analyses
networks pathways RNA-Seq visualization
updated 11 months ago by 43k • written 5.8 years ago by ★ 5.2k
0
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2
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1.9k
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News: Webinar: Multi-omics: Challenges, opportunities and application to biomarker discovery
biomarker next-gen-sequencing multiomics cancer
updated 11 months ago by 43k • written 6.8 years ago by ▴ 750
2
votes
2
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1.9k
views
News: BioC 2015, Bioconductor Annual Conference, July 20-22, Seattle, WA
Bioconductor Conference
updated 21 months ago by 43k • written 9.0 years ago by ★ 1.6k
0
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2
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3.4k
views
News: Course: Practical GWAS using Linux and R. 23-27 October 2017, Berlin (Germany)
GWAS Linux R
updated 11 months ago by 43k • written 6.6 years ago by ★ 2.5k
2
votes
2
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1.4k
views
News: R 3.2.3 is out
R
updated 12 months ago by 43k • written 8.3 years ago by ★ 5.1k
3
votes
2
replies
2.6k
views
News: Samtools/htslib v1.2 released
htslib samtools bcftools
updated 13 months ago by 43k • written 9.2 years ago by 104k
1
vote
2
replies
892
views
News: Online training - Introduction to Nextflow
Bionfirmatics Pipeline Workflow Netflow
20 months ago by carlopecoraro2 ★ 2.5k
8
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2
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2.3k
views
News: The bioinformatics chat is a new podcast about bioinformatics. In the first episode we discuss Scallop, a transcriptome assembler
podcast Assembly RNA-Seq
updated 11 months ago by 43k • written 7.0 years ago by ▴ 120
2
votes
2
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1.1k
views
News: Bioinformatics Solutions on AWS
Cloud AWS
updated 2.8 years ago by 43k • written 3.0 years ago by ▴ 20
3
votes
2
replies
682
views
News: Participate in a NCBI/NIAID Virtual Codeathon: VCF Files for Population Genomics, Jul 31 - Aug 4, 2023
VCF SARS-CoV-2 NCBI Codeathon
10 months ago by PeterC_NCBI ▴ 410
0
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2
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1.4k
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News: Webinar on fast and accurate DNA variant calling on 26 Apr 2017
variant-calling SNP gatk strand-ngs alignment
updated 11 months ago by 43k • written 7.0 years ago by ▴ 70
0
votes
2
replies
880
views
News: Course - Metagenomics, metatranscriptomics, and multi'omics for microbial community Studies
Metagenomics Metatranscriptomics Multiomics
updated 13 months ago by 43k • written 13 months ago by ★ 2.5k
5
votes
2
replies
1.5k
views
News: Google Dataset Search
google
updated 11 months ago by 43k • written 5.6 years ago by 161k
0
votes
2
replies
1.0k
views
News: Training - Introduction to Deep Learning
Deep-Learning Machine-Learning Python-Programming
updated 10 months ago by 43k • written 3.7 years ago by ★ 2.5k
0
votes
2
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1.3k
views
News: :: FINAL CALL :: Next-Generation Sequencing Data Analysis: A Practical Introduction (December 12-14, 2022 in Munich, Germany)
rnaseq dnaseq sequencing ngs workshop
17 months ago by David Langenberger 11k
2
votes
2
replies
1.6k
views
News: User-friendly Bioinformatics From RNA Seq to Biological Interpretation
machine-learning RNA-seq
updated 11 months ago by 43k • written 5.7 years ago by ▴ 10
6
votes
2
replies
1.5k
views
News: Biostars On The Genome Technology Cover
biostars
updated 14 months ago by 43k • written 11.3 years ago by 100k
0
votes
2
replies
2.1k
views
News: RNA-Seq Data Analysis Workshop in Berlin, Germany (13 - 16 March 2018)
NGS RNA-Seq sequencing
updated 11 months ago by 43k • written 6.3 years ago by 11k
1
vote
2
replies
755
views
News: Ensembl reduced functionality, early March
ensembl
updated 10 months ago by 43k • written 4.3 years ago by 23k
0
votes
2
replies
1.6k
views
News: M.Phil Program in Bioinformatics
education career
updated 13 months ago by 43k • written 8.5 years ago by • 0
2
votes
2
replies
730
views
News: Free online seminars/journal club
seminars journal-clubs
updated 13 months ago by 43k • written 3.8 years ago by ▴ 40
2
votes
2
replies
730
views
News: ISO usability testers for NCBI comparative genome viewer
comparative eukaryotic alignment pangenome
2.2 years ago by SanjidaR_NCBI ▴ 60
1,000 results • Page 4 of 20
Recent Votes
Answer: Filtration Of Reads With Length Lower Than 30 From Bam
Answer: How to compare the quality of assemblies
Comment: How to compare the quality of assemblies
Bedtools merge but only if intersection exists
Answer: Korean reference file
Comment: Korean human genome reference file
C: samtools sort bam file
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Recent Replies
Comment: Filtration Of Reads With Length Lower Than 30 From Bam by Hagen • 0
thanks! This saved me quite some time, I was about to write code to calculate the aligned length from the CIGAR.
Comment: Per base sequence content failed miserably by Kai Xin • 0
will look into that. Thank you very much
Comment: Korean human genome reference file by SeoGyun • 0
Thanks..... But I want to do imputation, so I have to make it as a vcf file, but the site only has a fatsa file....
Comment: miRNAs quantification using mirdeep2 tool by Ashok • 0
thank you for your reply https://github.com/rajewsky-lab/mirdeep2/blob/master/TUTORIAL.md i saw this github tutorial for miRNA quantifica…
Comment: Load a full GFF3 into annotation track using arrow (Apollo) by cmdcolin ★ 3.8k
Hi there, I let a developer know of this thread and they said they can check it out next week. Feel free to post to the https://github.com/…
Comment: How to get the reference panel for UKBB by 航太郎 • 0
Thanks for your guide!
Comment: Removing duplicates by joe ▴ 500
I'd try those OP @samuel recommends My guess is you're new to ONT, fast5 is the 'raw data' which is current over time...other than generat…
Comment: RNA seq differential expression analysis by swbarnes2 14k
No. Find a tutorial, try it, then if you have specific questions, ask of the galaxy help site.
Answer: Adding CB tag to bam file by swbarnes2 14k
Shouldn't you use PicardTools for this?
Comment: Downloaded pdb's on rcsb.org by Ram 43k
Sure. Or, one could do: bash try.bash "Homo sapiens" AHR | xargs -I v_pdb curl -s -o v_pdb.pdb https://files.rcsb.org/view/v_pdb.pdb
Comment: Downloaded pdb's on rcsb.org by iamsmor • 0
thank you so much
Comment: Downloaded pdb's on rcsb.org by GenoMax 141k
This may be the best option. Get the PDB ID's $ ./get.sh "Mus musculus" AHR 4M4X 5NJ8 5V0L 8H77 Then use `curl` to g…
Comment: Downloaded pdb's on rcsb.org by Ram 43k
It gives you the first 25 results though. I'll see if I can change that. EDIT: I've updated that number to 250. I'm hoping you won't need …
Comment: Downloaded pdb's on rcsb.org by iamsmor • 0
thank you very much
Answer: Downloaded pdb's on rcsb.org by Ram 43k
I'm going to build off of OP's query and give them a simple script: ```bash organism=$(echo $1 | sed 's/ /%20/g') gene=$2 curl -s https:/…
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