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News: Google Summer of Code and Open Bioinformatics Foundation is looking for students
open source job Forum News
updated 4.1 years ago by ▴ 10 • written 7.0 years ago by 7.7k
8
votes
3
replies
1.5k
views
News: fastp 0.22 released, with new FASTQ deduplication feature.
fastp
updated 18 months ago by 127k • written 19 months ago by ★ 2.4k
7
votes
3
replies
1.5k
views
News: New NCBI Datasets home and documentation pages provide easier access
ncbi gene SARS-CoV-2 genome
updated 23 months ago by 97k • written 23 months ago by ▴ 50
8
votes
3
replies
1.6k
views
News: Impact of outdated gene annotations on pathway enrichment analysis
david go ontology pathway enrichment News
6.5 years ago by pld 5.0k
0
votes
2
replies
457
views
News: Seascape Genomics in R
Genomics Seascape R
updated 3 months ago by 38k • written 5 months ago by ★ 2.3k
0
votes
2
replies
1.8k
views
News: NVIDIA GPU Conference sponsorship for Biostars + updated advertising terms
biostars meta
updated 11 months ago by 38k • written 8.1 years ago by 97k
0
votes
2
replies
3.0k
views
News: Course: Practical GWAS using Linux and R. 23-27 October 2017, Berlin (Germany)
GWAS R Linux Bioinformatics News
5.6 years ago by carlopecoraro2 ★ 2.3k
0
votes
2
replies
669
views
News: Online Course - A Practical Introduction to NGS Data Analysis (February 01-03, 2023)
NGS DNAseq variant-calling RNAseq
8 weeks ago by David Langenberger 9.9k
0
votes
2
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1.5k
views
News: 2 Days Hands on Workshop on Transcriptome-Seq Data Analysis
RNA-Seq sequencing SNP Assembly rna-seq News
5.8 years ago by clovergenls • 0
0
votes
2
replies
2.3k
views
News: PART FUNDED SCHOLARSHIPS - Coding, data management, and Shiny applications using RStudio for evolutionary biologists and ecologists - May 2017
R Rstudio Shiny apps News
6.0 years ago by oliverhooker ▴ 110
1
vote
2
replies
1.6k
views
News: Course: Applied Statistics and Bioinformatics with R and Bioconductor
R Statistics Bioconductor Metagenomics News
updated 5.7 years ago by ▴ 10 • written 5.7 years ago by ★ 2.3k
6
votes
2
replies
871
views
News: Temporarily reduced functionality of Ensembl and Ensembl Genomes
Ensembl News
4.1 years ago by Ben_Ensembl ★ 2.2k
5
votes
2
replies
4.2k
views
News: GeneSCF (Gene Enrichment Tool): Advice to users
kegg GeneSCF GO annotation
updated 6 weeks ago by 38k • written 6.2 years ago by 7.4k
8
votes
2
replies
655
views
News: Save time and money through improved onboarding of your NGS data scientists
NGS data-analysis
updated 10 days ago by 38k • written 3.2 years ago by 9.9k
0
votes
2
replies
2.2k
views
News: MinION Community Meeting: Thursday Dec 3rd (now live)
minion
updated 7 months ago by 38k • written 7.3 years ago by 97k
1
vote
2
replies
357
views
News: Gene Set Enrichment Analysis in R/Bioconductor
Gene-Set-Enrichment-Analysis R Cancer-Genomics GSEA
4 months ago by carlopecoraro2 ★ 2.3k
5
votes
2
replies
1.4k
views
News: #scRNABIO & organoids meeting
single cell sequencing organoids microfluidics News
4.6 years ago by aln ▴ 320
3
votes
2
replies
820
views
News: BETA Testing Opportunity for new RNA-seq data analysis tool
beta rnaseq omics multi-omics ngs News
updated 4.2 years ago by 47k • written 4.2 years ago by • 0
2
votes
2
replies
1.2k
views
News: R 3.2.3 is out
R News
7.2 years ago by Antonio R. Franco ★ 5.0k
5
votes
2
replies
692
views
News: The precisionFDA BioCompute Object App-a-thon has been extended to October 18!
challenge BioCompute bioinformatics News
3.7 years ago by hollystephens723 ▴ 70
3
votes
2
replies
3.5k
views
News: Course/Workshop: Informatics For Rna-Sequence Analysis (June, 2013)
RNA-seq
updated 4 weeks ago by 38k • written 10.2 years ago by 20k
2
votes
2
replies
1.9k
views
News: 2017 NIH SUMMER INTERNSHIP PROGRAM IN BIOMEDICAL RESEARCH (SIP)--applications open
training NIH News
6.4 years ago by Sean Davis 26k
1
vote
2
replies
1.4k
views
News: NCBI Datasets - try it out!
ncbi refseq Assembly genome News
3.0 years ago by vkkodali_ncbi ★ 3.4k
2
votes
2
replies
1.7k
views
News: BioC 2015, Bioconductor Annual Conference, July 20-22, Seattle, WA
Bioconductor Conference
updated 8 months ago by 38k • written 7.9 years ago by ★ 1.6k
13
votes
2
replies
1.1k
views
News: Thank you Biostars!
acknowledgement thank you biostars forum News
3.9 years ago by Glory Basumata ▴ 140
1
vote
2
replies
2.0k
views
News: Workshop: Metagenomics, Metatranscriptomics, and multi'omics for microbial community studies (9-13 April 2018 in Berlin)
Metagenomics Bioinformatics Metatranscriptomics News
5.1 years ago by carlopecoraro2 ★ 2.3k
3
votes
2
replies
1.0k
views
News: Genome Informatics meeting software list
software genomics informatics meetings News
5.4 years ago by Sean Davis 26k
1
vote
2
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1.6k
views
News: Making efficient NGS data analysis softwares - GATB-Core Library Tutorial
tutorial GATB next-gen tool News
updated 6.5 years ago by 127k • written 6.5 years ago by ▴ 140
6
votes
2
replies
2.0k
views
News: Galaxy-specific Biostar Instance
galaxy biostars
updated 6 weeks ago by 38k • written 8.9 years ago by ▴ 380
2
votes
2
replies
915
views
News: Bioinformatics Solutions on AWS
Cloud AWS
updated 21 months ago by 38k • written 23 months ago by ▴ 20
11
votes
2
replies
1.3k
views
News: ASA discusses limitations of p-values what are the alternatives?
statistics p-value News
7.0 years ago by dariober 14k
2
votes
2
replies
2.4k
views
News: ENCODE 2015: Research Applications and Users Meeting
workshop mouse-encode encode
updated 6 days ago by 38k • written 7.8 years ago by 34k
6
votes
2
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2.2k
views
News: Interested in de novo transcriptome assembly using Trinity? Check out our interview to Brian Haas
rna-seq alignment RNA-Seq News
6.1 years ago by carlopecoraro2 ★ 2.3k
1
vote
2
replies
547
views
News: Ensembl reduced functionality, early March
ensembl service News
3.2 years ago by Emily 23k
1
vote
2
replies
367
views
News: Course: Network Analysis in R
NetworkAnalyis R
9 weeks ago by carlopecoraro2 ★ 2.3k
1
vote
2
replies
1.2k
views
News: Webinar on Diagnosis of Rare Diseases using NGS Based Multi-gene Testing- Case studies by Dr.Aparna Ganapathy on 18 Apr 2018
dna-seq variant calling rare disease strand ngs News
4.9 years ago by Genomics ▴ 70
9
votes
2
replies
14k
views
News: Bio-Linux 8 is now available
genome rna-seq alignment Assembly next-gen
updated 15 months ago by 38k • written 8.7 years ago by ★ 2.2k
6
votes
2
replies
1.9k
views
News: RNA-Seq Data Analysis Workshop in Leipzig, Germany (09 - 12 October 2017)
RNA-Seq workshop NGS News
updated 5.7 years ago by • 0 • written 5.7 years ago by 9.9k
10
votes
2
replies
3.0k
views
News: Biostars based Q&A for Bioconductor: http://support.bioconductor.org
RNA-Seq bioconductor
updated 14 months ago by 38k • written 8.5 years ago by 153k
2
votes
2
replies
749
views
News: Interested in Machine Learning?
machinelearning deeplearning News
3.9 years ago by carlopecoraro2 ★ 2.3k
1
vote
2
replies
567
views
News: Online training - Introduction to Nextflow
Bionfirmatics Pipeline Workflow Netflow
7 months ago by carlopecoraro2 ★ 2.3k
0
votes
2
replies
1.8k
views
News: RNA-Seq Data Analysis Workshop in Berlin, Germany (13 - 16 March 2018)
sequencing NGS RNA-Seq News
5.2 years ago by David Langenberger 9.9k
6
votes
2
replies
1.4k
views
News: Biostars On The Genome Technology Cover
biostars
updated 6 weeks ago by 38k • written 10.2 years ago by 97k
14
votes
2
replies
5.0k
views
News: Open Targets, identifying targets for drug development in the treatment of diseases.
Tools Bioinformatics Drug open targets database News
4.3 years ago by Denise CS ★ 5.2k
1
vote
2
replies
1.3k
views
News: My own brand-new blog for bioinformatics learning
learning
updated 6 weeks ago by 38k • written 5.3 years ago by ▴ 100
5
votes
2
replies
1.3k
views
News: Google Dataset Search
google News
updated 4.4 years ago by ▴ 10 • written 4.6 years ago by 153k
0
votes
2
replies
1.6k
views
News: Webinar: Multi-omics: Challenges, opportunities and application to biomarker discovery
next-gen multiomics sequencing biomarker cancer News
5.8 years ago by Persistent LABS ▴ 750
0
votes
2
replies
300
views
News: Course - Metagenomics, metatranscriptomics, and multi'omics for microbial community Studies
Metagenomics Metatranscriptomics Multiomics
updated 10 days ago by 38k • written 10 days ago by ★ 2.3k
0
votes
2
replies
491
views
News: Reduced functionality of Ensembl and Ensembl Genomes on the 13th November
ensembl downtime News
3.4 years ago by Emily 23k
1
vote
2
replies
554
views
News: New chat server (Discord) for bioinformatics
community
11 weeks ago by Samuel Lampa ★ 1.3k
1,000 results • Page 4 of 20
Recent Votes
smoothing or binning bigWig file
List of Ongoing and Planned Long Read Sequencing studies?
Are We Rude/Do We Expect Too Much From People Asking Questions On This Forum?
Answer: Read lengths greater than insert length
A: Changing Output From Gene ID to Symbol When Running findMarkers from Scran
Answer: BLAST Database error: No alias or index file found for nucleotide database
Answer: How to get gene from PSIBLAST resuts
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Recent Replies
Comment: split fasta file to train deep learning model by pinheirofabiano ▴ 10
@shenwei356, thank you very much for your help, perfect! But now I realized that some fasta sequences contain the letter "B", which is ou…
Comment: Most efficient way to run Diamond against a very very large database (i.e., NCBI by Mensur Dlakic ★ 23k
I think it depends on the speed of your local disks and the memory amount. On a single node, breaking up the database doesn't sound like a …
Comment: Sample size for population genetics by Jeremy Leipzig 21k
Other populations just make the model harder to generalize, not easier.
Comment: Are We Rude/Do We Expect Too Much From People Asking Questions On This Forum? by Vincent Laufer ★ 2.5k
i think there is some of that - my most upvoted comment of all time was a dismissive comment i made while extremely tired. for context i ha…
Comment: Molecular biologist / clinical pharmacologist (f/m/d) by Jeremy ▴ 770
Is this job on site in Vienna or remote?
Comment: smoothing or binning bigWig file by rls_08 ▴ 40
if you use bigwigCompare , that would not create a sliding window, but instead, it will output the mean for each bin, according to the -bin…
Comment: Sample size for population genetics by zimmer.schweiz • 0
Thank you so much for your answer. For common polygenic diseases, would it make sense to increase the number of populations sampled, in ord…
Answer: Sample size for population genetics by Jeremy Leipzig 21k
For a rare penetrant monogenic disease? A few cases. For a common polygenic disease or trait? 500k-10M
Answer: using GRanges metadata to constrain overlap searches between objects by seidel 11k
Rather than do all overlaps all the time for all samples, why not restrict the data by sample when you can. The code below works about 4 ti…
Comment: How to get gene from PSIBLAST resuts by Tom • 0
Hello, thank you for your answer, I have a question, Why the information from the GFF file and from the feature table is different? I see …
Comment: SNP ID (rsID) to Chr no. and Position by Jewahir • 0
Yeah, thank you for that!!
Comment: 1000 genomes hg38 with dbSNP rsid by Ram 38k
It should be pretty straightforward. Just to save you some pain, run these on the 1000g VCF once you download it: 1. `vt decompose -s` to …
Comment: 1000 genomes hg38 with dbSNP rsid by Vince ▴ 150
Yeah, I had some hope that I wouldn't need to mess with doing this ...
Answer: counting the unmapped reads by chemkhi.ali13 • 0
> Hi all, > > I have a sam file, my supervisor asked me to count the number of > unmapped reads, which command I should use? > > sam…
Comment: 1000 genomes hg38 with dbSNP rsid by Ram 38k
In that case, you'll need to get the VCF from 1000g - that's probably going to be the only place where individual level data is available, …
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