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News: Save time and money through improved onboarding of your NGS data scientists
NGS data-analysis
updated 10 weeks ago by 39k • written 3.4 years ago by 9.9k
2
votes
2
replies
1.7k
views
News: Introducing a new Instructor of Physalia-Courses: Dr. January Weiner
next-gen SNP sequence
updated 7 weeks ago by 39k • written 6.5 years ago by ★ 2.3k
0
votes
2
replies
2.4k
views
News: PART FUNDED SCHOLARSHIPS - Coding, data management, and Shiny applications using RStudio for evolutionary biologists and ecologists - May 2017
Rstudio R Shiny
updated 21 days ago by 39k • written 6.1 years ago by ▴ 110
3
votes
2
replies
288
views
News: Participate in a NCBI/NIAID Virtual Codeathon: VCF Files for Population Genomics, Jul 31 - Aug 4, 2023
VCF SARS-CoV-2 NCBI Codeathon
7 days ago by PeterC_NCBI ▴ 260
0
votes
2
replies
2.0k
views
News: Seqnews.Net: Discover And Share News On Next-Generation Sequencing
next-gen-sequencing
updated 3 months ago by 39k • written 10.5 years ago by 9.9k
13
votes
2
replies
2.7k
views
News: A Summary Of All Encode Related News On The Openhelix Blog: Encode Floods The News
encode
updated 3 months ago by 39k • written 10.7 years ago by 98k
0
votes
2
replies
1.3k
views
News: Webinar on fast and accurate DNA variant calling on 26 Apr 2017
variant-calling SNP gatk strand-ngs alignment
updated 21 days ago by 39k • written 6.1 years ago by ▴ 70
1
vote
2
replies
1.7k
views
News: Course: Applied Statistics and Bioinformatics with R and Bioconductor
Statistics R Metagenomics Bioconductor
updated 17 days ago by 39k • written 5.9 years ago by ★ 2.3k
6
votes
2
replies
1.6k
views
News: Belly Button Biodiversity Project Requests Your Analysis
biodiversity project
updated 3 months ago by 39k • written 10.5 years ago by 11k
2
votes
2
replies
1.2k
views
News: Course: Applied Statistics and Bioinformatics with R and Bioconductor. (Berlin, 22-26 January 2018)
R next-gen-sequencing
updated 15 days ago by 39k • written 5.5 years ago by ★ 2.3k
0
votes
2
replies
1.4k
views
News: Free Webinar: Sequence alignment: the central step in reference based Next Generation Sequencing data analysis
next-gen SAM alignment sangenix
updated 7 weeks ago by 39k • written 6.4 years ago by ▴ 750
0
votes
2
replies
1.0k
views
News: :: FINAL CALL :: Next-Generation Sequencing Data Analysis: A Practical Introduction (December 12-14, 2022 in Munich, Germany)
rnaseq dnaseq sequencing ngs workshop
6 months ago by David Langenberger 9.9k
2
votes
2
replies
1.9k
views
News: Briefings In Bioinformatics International, Interdisciplinary, Multi-Level Bioinformatics Training And Education
education
updated 3 months ago by 39k • written 9.7 years ago by 154k
6
votes
2
replies
2.3k
views
News: Interested in de novo transcriptome assembly using Trinity? Check out our interview to Brian Haas
alignment RNA-Seq
updated 6 weeks ago by 39k • written 6.2 years ago by ★ 2.3k
3
votes
2
replies
2.4k
views
News: Samtools/htslib v1.2 released
htslib samtools bcftools
updated 11 weeks ago by 39k • written 8.3 years ago by 103k
11
votes
2
replies
1.3k
views
News: ASA discusses limitations of p-values what are the alternatives?
statistics p-value
updated 8 weeks ago by 39k • written 7.2 years ago by 14k
2
votes
2
replies
2.5k
views
News: ENCODE 2015: Research Applications and Users Meeting
workshop mouse-encode encode
updated 10 weeks ago by 39k • written 8.0 years ago by 35k
0
votes
2
replies
2.2k
views
News: MinION Community Meeting: Thursday Dec 3rd (now live)
minion
updated 9 months ago by 39k • written 7.5 years ago by 98k
2
votes
2
replies
536
views
News: Free online seminars/journal club
seminars journal-clubs
updated 12 weeks ago by 39k • written 2.9 years ago by ▴ 40
15
votes
2
replies
10k
views
News: Breaking News - Illumina MiniSeq
next-gen-sequencing
updated 10 months ago by 39k • written 7.4 years ago by ★ 1.3k
0
votes
2
replies
1.7k
views
News: Webinar: Multi-omics: Challenges, opportunities and application to biomarker discovery
biomarker next-gen-sequencing multiomics cancer
updated 20 days ago by 39k • written 5.9 years ago by ▴ 750
1
vote
2
replies
410
views
News: Gene Set Enrichment Analysis in R/Bioconductor
Gene-Set-Enrichment-Analysis R Cancer-Genomics GSEA
7 months ago by carlopecoraro2 ★ 2.3k
1
vote
2
replies
1.5k
views
News: Workshop: Data analysis in high throughput biology. deadline today (2 places left)
next-gen R RNA-Seq
updated 21 days ago by 39k • written 6.1 years ago by ★ 2.3k
6
votes
2
replies
1.9k
views
News: RNA-Seq Data Analysis Workshop in Leipzig, Germany (09 - 12 October 2017)
NGS RNA-Seq workshop
updated 17 days ago by 39k • written 5.9 years ago by 9.9k
2
votes
2
replies
1.7k
views
News: BioC 2015, Bioconductor Annual Conference, July 20-22, Seattle, WA
Bioconductor Conference
updated 11 months ago by 39k • written 8.1 years ago by ★ 1.6k
0
votes
2
replies
1.9k
views
News: RNA-Seq Data Analysis Workshop in Berlin, Germany (13 - 16 March 2018)
NGS RNA-Seq sequencing
updated 14 days ago by 39k • written 5.4 years ago by 9.9k
6
votes
2
replies
2.4k
views
News: RNA-Seq Data Analysis Workshop in Berlin, Germany (full)
NGS RNA-Seq workshop
updated 7 weeks ago by 39k • written 6.5 years ago by 9.9k
5
votes
2
replies
3.4k
views
News: Tuesday 10/29 Live Tour Of New Features In Integrated Genome Browser 8
genome-browser RNA-seq ChIP-seq
updated 3 months ago by 39k • written 9.6 years ago by ★ 2.3k
4
votes
2
replies
2.9k
views
News: NCBI NOW (Next generation sequencing Online Workshop) October 13 - 23 , 2015
NCBI DNA-Seq NGS RNA-Seq
updated 9 weeks ago by 39k • written 7.7 years ago by ★ 2.2k
0
votes
2
replies
450
views
News: Course - Metagenomics, metatranscriptomics, and multi'omics for microbial community Studies
Metagenomics Metatranscriptomics Multiomics
updated 10 weeks ago by 39k • written 10 weeks ago by ★ 2.3k
1
vote
2
replies
888
views
News: Sage Bionetworks is seeking researchers and data scientists to participate in software user research!
research software
updated 6 days ago by 39k • written 4.3 years ago by ▴ 30
14
votes
2
replies
5.1k
views
News: Open Targets, identifying targets for drug development in the treatment of diseases.
database Drug open-targets
updated 8 weeks ago by 39k • written 7.0 years ago by ★ 5.2k
2
votes
2
replies
1.2k
views
News: GeNets: a unified web platform for network-based genomic analyses
networks pathways RNA-Seq visualization
updated 8 days ago by 39k • written 5.0 years ago by ★ 5.2k
1
vote
2
replies
1.4k
views
News: My own brand-new blog for bioinformatics learning
learning
updated 3 months ago by 39k • written 5.5 years ago by ▴ 100
6
votes
2
replies
2.1k
views
News: Galaxy-specific Biostar Instance
galaxy biostars
updated 3 months ago by 39k • written 9.1 years ago by ▴ 380
6
votes
2
replies
901
views
News: Temporarily reduced functionality of Ensembl and Ensembl Genomes
Ensembl
updated 6 days ago by 39k • written 4.3 years ago by ★ 2.2k
5
votes
2
replies
1.3k
views
News: Google Dataset Search
google
updated 8 days ago by 39k • written 4.7 years ago by 154k
0
votes
2
replies
717
views
News: 20% Off - Next-Generation Sequencing Data Analysis: A Practical Introduction (May 3-5, 2023 in Munich, Germany)
NGS DNA-Seq variant-calling RNA-Seq workshop
5 weeks ago by David Langenberger 9.9k
2
votes
2
replies
772
views
News: Interested in Machine Learning?
deep-learning machine-learning
updated 2 days ago by 39k • written 4.1 years ago by ★ 2.3k
3
votes
2
replies
1.0k
views
News: Course "Data Crunching: from hell to heaven", Udine, Italy, 25-27 July, 2018
NGS next-generation-sequencing
updated 9 days ago by 39k • written 5.0 years ago by ★ 3.0k
0
votes
2
replies
1.5k
views
News: 2 Days Hands on Workshop on Transcriptome-Seq Data Analysis
RNA-Seq sequencing SNP Assembly
updated 20 days ago by 39k • written 6.0 years ago by • 0
5
votes
2
replies
4.3k
views
News: GeneSCF (Gene Enrichment Tool): Advice to users
kegg GeneSCF GO annotation
updated 3 months ago by 39k • written 6.4 years ago by 7.5k
13
votes
2
replies
1.2k
views
News: Thank you Biostars!
meta
updated 2 days ago by 39k • written 4.1 years ago by ▴ 140
0
votes
2
replies
503
views
News: Seascape Genomics in R
Genomics Seascape R
updated 5 months ago by 39k • written 7 months ago by ★ 2.3k
2
votes
2
replies
2.0k
views
News: De Novo Transcriptome Analysis (Assembly and Differential Gene Expression in Non-Model Organisms)
Assembly RNA-Seq
updated 8 weeks ago by 39k • written 6.9 years ago by ▴ 310
0
votes
2
replies
1.5k
views
News: M.Phil Program in Bioinformatics
education career
updated 10 weeks ago by 39k • written 7.6 years ago by • 0
6
votes
2
replies
1.4k
views
News: Biostars On The Genome Technology Cover
biostars
updated 3 months ago by 39k • written 10.4 years ago by 98k
3
votes
2
replies
854
views
News: BETA Testing Opportunity for new RNA-seq data analysis tool
beta-testing RNA-seq multi-omics ngs
updated 6 days ago by 39k • written 4.4 years ago by • 0
1
vote
2
replies
1.5k
views
News: Webinar: Generating interpretable maps of single cell chromatin accessibility and RNA-seq datasets with Similarity Weighted Nonnegative Embedding
scRNAseq webinar rna-seq single-cell
updated 2 days ago by 39k • written 4.1 years ago by ▴ 580
3
votes
2
replies
1.1k
views
News: Genome Informatics meeting software list
meetings genomics informatics software
updated 15 days ago by 39k • written 5.6 years ago by 26k
1,000 results • Page 4 of 20
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Comment: ggsave() bug in ggplot2?
Comment: BioInformatics, Software
Comment: Single Cell Rna Seq Using BD Rhapsody
Comment: DP meaning in VCF files
Answer: Help with running ATAC using Encode pipeline
Comment: sorting BAM file
Comment: Create customized gene annotation file
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Popular Question to mari.johnson • 0
Commentator to barslmn ★ 1.6k
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Answer: How to extract haplotype data from phased bcf files by Pierre Lindenbaum 154k
use %TGT (translated genotype) $ bcftools query -f '[%CHROM %POS %TGT\n]'
Comment: convert data frame with character column to data frame with integer column by Basti ★ 1.5k
You would better give an example with values because we don't know what is in each variable so we cannot give you a precise code, but seems…
Comment: RNASeq gene labeling and mRNA filter from bulkRNA data. by ATpoint 72k
This information is annotated in GTF files. You can get them for almost every annotated species from Ensembl. There is a column `gene_bioty…
Answer: DE genes across multiple scRNAseq clusters-are they significantly enriched? by ATpoint 72k
First of all, with thousands of DEGs you might want to choose a DE framework that allows testing against a fold change threshold, such as `…
Comment: PacBio Pipeline and Tools for Variant Call by Kiran ▴ 80
Thanks a lot William, I am Clear now
Comment: The famous WGS dataset, Ashkenazi Trio? by cmdcolin ★ 3.0k
what is valuable information to you
Answer: Why weblogo of biopython doesn't work? by minakshiboruahassam • 0
The weblogo3 application is giving same file even if u run the scripts separately on python standalone or whatever. The weblogo command is …
Answer: Make a BedGraph file by rfran010 ▴ 80
I would suggest bedtools makewindows to generate your 3,000bp bins then bedtools coverage to generate fraction of repeats over your windows…
Answer: What is the best way to clean bulk RNA-seq data? by rfran010 ▴ 80
Honestly, I am a fan of visualizing to select a threshold since these can depend on the specific experiment. I would even just run standard…
Answer: Help with running ATAC using Encode pipeline by rfran010 ▴ 80
Read all instructions carefully Specifically, this info is under the "Input JSON file specification" section with details in the followin…
Answer: BioInformatics, Software by rfran010 ▴ 80
There have been some good suggestions, but it seems like you may be asking one of two questions, either (1) how to do bioinformatics? or (2…
Answer: Genome assembly statistical tools by Bryan • 0
I'll follow up what a few others have mentioned, but I like stats.sh within the BBTools package for raw assembly stats. I'll then polish my…
Comment: how to design a guide RNA by rfran010 ▴ 80
I agree this is very basic CRISPR mechanism and you'd be better off reading sites that could explain better than me. However, there is a lo…
Comment: ATAC peak-calling: same peak ID across multiple experimental conditions? by rfran010 ▴ 80
You want to use the MACS2 score columns? You can retain these with bedtools option `-c` . This will retain the score columns from any merge…
Comment: best annotation approach for peaks by rfran010 ▴ 80
The number of regions annotated as "Promoters" is the same regardless of TSS length? You can add this argument to annotatePeak (for mouse M…
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