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899 results • Page 4 of 18
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News: PrecisionFDA and NCI-CPTAC Mislabeling Challenge is Launching on September 24th!
precision-medicine NCI FDA proteomics.RNA
updated 11 months ago by 43k • written 5.6 years ago by ▴ 150
3
votes
1
reply
1.4k
views
News: GATK returns to a fully open-source license
gatk
updated 11 months ago by 43k • written 6.9 years ago by 100k
0
votes
1
reply
611
views
News: Bioinformatics Training Program
next-gen-sequencing genome RNA-Seq
updated 10 months ago by 43k • written 4.8 years ago by • 0
0
votes
1
reply
723
views
News: Our New Publication "Machine learning to support social media empowered patients in cancer care and cancer treatment decisions"
Machine-Learning Health-Informatics
updated 11 months ago by 43k • written 5.5 years ago by ▴ 20
0
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1
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1.5k
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News: Live Webinar on RNA-Seq Data Analysis on 28 Feb 2018
splice-variants RNA-Seq alignment Strand-NGS
updated 11 months ago by 43k • written 6.2 years ago by ▴ 70
2
votes
1
reply
874
views
News: Gene set enrichment and pathway analysis in HT data
next-gen-sequencing RNA-Seq
updated 11 months ago by 43k • written 5.2 years ago by ★ 2.5k
0
votes
1
reply
648
views
News: International Conference on Renewable & Non-Renewable Energy
next-gen
updated 11 months ago by 43k • written 5.9 years ago by • 0
0
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1
reply
1.4k
views
News: Webinar on Leukocyte immunobiology by Dr. Mario Deng, Professor of Medicine, UCLA on 9 Aug 2017, 8am PST
UCLA transcriptome-analysis RNA-Seq Strand-NGS
updated 11 months ago by 43k • written 6.8 years ago by ▴ 70
0
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1
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1.8k
views
News: Spatio-temporal Transcriptome of LncRNAs in Human Brain
Parkinson lncRNA Alzheimer brain transcriptome
updated 11 months ago by 43k • written 6.8 years ago by ▴ 860
1
vote
1
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1.7k
views
News: Bioinformatics for Beginners @NIH, (Bethesda, MD, USA) Feb 13 - 16, 2018
beginners training
updated 11 months ago by 43k • written 6.5 years ago by ▴ 140
0
votes
1
reply
370
views
News: Online Course - Genomic Prediction
Genomic-Prediction Selective-Breeding
updated 3 months ago by 43k • written 3 months ago by ★ 2.5k
1
vote
1
reply
934
views
News: Webinar on Extensive Assessment of Gene Fusion Detection, Prioritization, Annotation and Characterization on 11 March 2020
detection webinar RNA-Seq gene-fusion
updated 10 months ago by 43k • written 4.2 years ago by ▴ 40
2
votes
1
reply
671
views
News: NGS & Microarray Custom Data Analysis Training Program
next-gen-sequencing RNA-Seq ChIP-Seq
updated 10 months ago by 43k • written 4.8 years ago by • 0
3
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1
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1.2k
views
News: UniProt: Change of FT and CC section in UniProtKB text format
uniprot protein
updated 10 months ago by 43k • written 4.6 years ago by ★ 2.4k
2
votes
1
reply
1.4k
views
News: of the Galaxy: 17.05 Release, Galaxy Community Conference, and more
event galaxy paper
updated 11 months ago by 43k • written 6.9 years ago by ▴ 610
0
votes
1
reply
1.1k
views
News: New Alexa skill provides voice-based access to Protein Data Bank data
protein-structure pdb
updated 11 months ago by 43k • written 6.5 years ago by • 0
1
vote
1
reply
1.9k
views
News: Bioinformatics Contest 2017. Results
contest
updated 11 months ago by 43k • written 7.1 years ago by ▴ 70
0
votes
0
replies
411
views
News: Course - Metabolomics in R/Bioconductor
R Data-Analysis Metabolomics Bioconductor
updated 6 months ago by 43k • written 6 months ago by ★ 2.5k
0
votes
0
replies
354
views
News: Become a Bioinformatics Pro: Easy Understanding Starts Here
Structural-Bioinformatics
updated 6 months ago by 43k • written 6 months ago by • 0
0
votes
0
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981
views
News: Training in Advanced Transcriptomics (RNASeq) Analysis @ NIH, USA
training RNA-Seq next-gen
updated 11 months ago by 43k • written 5.0 years ago by ▴ 140
1
vote
0
replies
321
views
News: Course - Developing R/Bioconductor Packages for Genomics
R package-development Genomics Bioconductor
updated 6 months ago by 43k • written 6 months ago by ★ 2.5k
0
votes
0
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2.4k
views
News: WORKSHOP - Landscape genetic data analysis using R
genome R RNA-Seq
updated 11 months ago by 43k • written 7.1 years ago by ▴ 110
0
votes
0
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428
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News: course - DNA METHYLATION IN ECOLOGY AND EVOLUTION
Non-Model-Organisms DNA-Methylation BS-seq
updated 8 months ago by 43k • written 9 months ago by ★ 2.5k
0
votes
0
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867
views
News: OmicsLogic Online Bioinformatics Program (March 2019) has started
genome RNA-Seq next-gen
updated 11 months ago by 43k • written 5.1 years ago by ▴ 340
3
votes
0
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1.3k
views
News: Nextflow Training Course
Pipeline Workflow NEXTFLOW
updated 10 months ago by 43k • written 4.5 years ago by ★ 2.5k
0
votes
0
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1.2k
views
News: Comparative Genomics Workshop (Berlin, 1-5 October 2018). Last Call
next-gen PACBIO
updated 11 months ago by 43k • written 5.7 years ago by ★ 2.5k
0
votes
0
replies
591
views
News: The precisionFDA BioCompute Object App-a-thon submission period ends in 1 week!
app-a-thon biocompute precisionFDA
updated 10 months ago by 43k • written 4.5 years ago by ▴ 70
0
votes
0
replies
1.0k
views
News: Population genomics course (Berlin, May 14-18)
genome next-gen R SNP
updated 11 months ago by 43k • written 6.1 years ago by ★ 2.5k
0
votes
0
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943
views
News: Comparative Genomics Workshop (Berlin, 1-5 October 2018)
snp assembly SV
updated 11 months ago by 43k • written 5.6 years ago by ★ 2.5k
4
votes
0
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1.2k
views
News: Workshop for genomic data visualization and interpretation
R RNA-Seq ggplot2 genomics
updated 11 months ago by 43k • written 5.4 years ago by 19k
0
votes
0
replies
1.3k
views
News: Training in Creating Plots, Graphs and Maps using R @ NIH, USA, Mar 6 - 9, 2018
R plots maps graphs
updated 11 months ago by 43k • written 6.2 years ago by ▴ 140
2
votes
0
replies
799
views
News: Course: RNA-seq Analyses in non-model organisms (Berlin 11-15 November 2019)
gene RNA-Seq next-gen
updated 11 months ago by 43k • written 4.9 years ago by ★ 2.5k
0
votes
0
replies
1.5k
views
News: Course: Advanced Python for Biologists. Berlin (Germany). 13-17 November 2017
Python
updated 11 months ago by 43k • written 6.6 years ago by ★ 2.5k
0
votes
0
replies
243
views
News: 3rd edition of the Winter School in Bioinformatics - Online February 26 - March 1
genomics reproducibility phylogenomics transcriptomics
3 months ago by carlopecoraro2 ★ 2.5k
0
votes
0
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1.7k
views
News: Metagenomics Workshop in October 2017 in Frankfurt, Germany
NGS workshop metagenomics
updated 11 months ago by 43k • written 6.8 years ago by 11k
5
votes
0
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991
views
News: Free online Ensembl REST API training
perl rest-api jupyter python ensembl
updated 11 months ago by 43k • written 5.4 years ago by 23k
0
votes
0
replies
1.0k
views
News: Call For Papers - PSB 2019 Special session on Biological Data Privacy
paper
updated 11 months ago by 43k • written 6.0 years ago by • 0
1
vote
0
replies
856
views
News: hackseqRNA: Computational RNA hackathon, Vancouver BC
hackathon RNA
updated 10 months ago by 43k • written 4.2 years ago by ▴ 50
0
votes
0
replies
2.0k
views
News: Metagenomics course. 9-13 April 2018
genome R Metagenomics
updated 11 months ago by 43k • written 6.2 years ago by ★ 2.5k
0
votes
0
replies
1.0k
views
News: Epigenomics Workshop in Berlin (28th May-1st June 2018)
RNA-Seq ChIP-Seq ATAC-seq
updated 11 months ago by 43k • written 6.1 years ago by ★ 2.5k
0
votes
0
replies
2.1k
views
News: Workshop: RADseq data analysis in Berlin
next-gen genome SNP
updated 11 months ago by 43k • written 7.0 years ago by ★ 2.5k
0
votes
0
replies
1.5k
views
News: BioVM 18.04 - call for testing and feedback
ubuntu virtual-machine linux biovm
updated 11 months ago by 43k • written 6.0 years ago by ▴ 320
0
votes
0
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1.6k
views
News: Registration deadline for 2017 CBW bioinformatics workshops is fast approaching
SNP ChIP-Seq Assembly RNA-Seq R
updated 11 months ago by 43k • written 7.1 years ago by ▴ 30
0
votes
0
replies
698
views
News: Training in Advanced Transcriptomics (RNA-Seq) Analysis
Transcriptome-analysis RNA-Seq Biomedical next-gen
updated 10 months ago by 43k • written 4.2 years ago by ▴ 140
0
votes
0
replies
1.4k
views
News: Hands-on machine learning workshop for biomedical data
genome machine-learning
updated 11 months ago by 43k • written 5.8 years ago by ▴ 10
0
votes
0
replies
439
views
News: Online course: Easily analyze single cell RNA-seq data with Cellenics®, a user-friendly web-based platform
scRNA-seq training single-cell-RNA-seq
updated 7 months ago by 43k • written 7 months ago by • 0
1
vote
0
replies
503
views
News: Course - Introduction to Deep Learning for biologists
Genomics Deep-Learning Python NGS
updated 10 months ago by 43k • written 10 months ago by ★ 2.5k
0
votes
0
replies
649
views
News: precisionFDA is launching the Truth Challenge V2: Calling Variants from Short and Long Reads in Difficult-to-Map Regions on May 1st!
gene genome
updated 10 months ago by 43k • written 4.0 years ago by ▴ 150
0
votes
0
replies
671
views
News: Gene Ontology Virtual User Meeting
Ontology GO Enrichment Gene-Ontology
updated 10 months ago by 43k • written 4.0 years ago by • 0
0
votes
0
replies
352
views
News: Course: Data Manipulation and Visualisation with Python
Python Data-Visualization Data-Manipulation
updated 7 months ago by 43k • written 7 months ago by ★ 2.5k
899 results • Page 4 of 18
Recent Votes
Detecting somatic variants in non-tumor tissue without normals
Answer: Sequence read length shorter than flow cell specification
Answer: Sequence read length shorter than flow cell specification
Comment: Why gatk VariantAnnotator required bam and coverage files
A: Generate Vcf.Gz File And Its Index File Vcf.Gz.Tbi
Visualization of ChIP-seq data using Heatmaps (Updated: 06/10/16)
Answer: How do I get the 3bp sequence on either side of a co-ordinate
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Scholar to ATpoint 82k
Popular Question to zdiazmar ▴ 30
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Recent Replies
Comment: Treatment VS Control in Single Cell RNAseq analysis by ATpoint 82k
Open a new question, with details.
Comment: Normalize scRNAseq data to housekeeping genes to compare several datasets by ATpoint 82k
I recommend https://bioconductor.org/books/3.18/OSCA.basic/normalization.html as well as the "advanced" section in this book.
Comment: Why gatk VariantAnnotator required bam and coverage files by QX • 0
thank you!
Comment: Treatment VS Control in Single Cell RNAseq analysis by kilcdincer ▴ 10
Hello, I have more or less same experimental setting and was wondering how you proceeded with your analysis? Can I reach its GitHub reposit…
Comment: BLAST using both nucleotides and taxonomic local databases by GenoMax 141k
> I ask this as some BLAST command fields as scinames or sblastnames do not give any output with a classic nt BLAST If that information is…
Answer: BLAST using both nucleotides and taxonomic local databases by 5heikki 11k
This has been discussed [many times][1] [1]: https://www.biostars.org/p/76551/
Answer: why renaming Idents in Seurat object doesn't work? by Bioinfotec ▴ 10
I think when you give indent to seuObj : Idents(seuObj) <- 'RNA_snn_res.0.1' You may wrongly assign other value to it such as …
Answer: ScRNAseq-How to correctly choose cell type marker genes by Bioinfotec ▴ 10
In fact, there is no gold standard for cell type annotation. To achieve correct cell type classification, you can combine the two methos. F…
Answer: ScRNA data question by Bioinfotec ▴ 10
In violin plot, a dot represents a cell. Actually, the straight lines you see in your infected image just means these cells have the same e…
Comment: Sequence read length shorter than flow cell specification by GenoMax 141k
> the have sent data with different sequencing read lengths: 55bp pair ended and 80bp single ended If they sent data that is not what you…
Comment: How to know synonymous and non-synonymous SNPs from transcriptome sequencing by rohitsatyam102 ▴ 840
I have some off-the-chart dN/dS values for few genes (>20) when using your script on VCF obtained from a 20K plasmodium genomes (pf7K). | …
Answer: Sequence read length shorter than flow cell specification by ATpoint 82k
It is the amount of reagent in the kit that determines read length. Sometimes index cycle reagents are allocated to R1/R2 or they used anot…
Comment: Why gatk VariantAnnotator required bam and coverage files by Pierre Lindenbaum 161k
you don't need the bam file https://gatk.broadinstitute.org/hc/en-us/articles/13832654601755-VariantAnnotator : VariantAnnotator …
Comment: GAPIT p-value significance threshold by ginellegrenier • 0
Hi, I was wondering if you have found a solution to this? Thanks!
Comment: PCA plot by jkim ▴ 170
cross posted in bioconductor. [https://support.bioconductor.org/p/9157968/][1] [1]: https://support.bioconductor.org/p/9157968/
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