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1,000 results • Page
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0
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3.0k
views
News:
Call For Book Chapters: Big Data Analytics in Genomics (Springer USA)
Book-Chapter
CFP
updated 7 months ago by
Ram
38k • written 7.4 years ago by
kc.w
▴ 10
0
votes
0
replies
3.0k
views
News:
sRNAbench: profiling of small RNAs and its sequence variants in single or multi-species high-throughput experiments
webserver
isomiRs
microRNA
small-RNA
updated 18 days ago by
Ram
38k • written 8.4 years ago by
David Langenberger
9.9k
14
votes
4
replies
3.0k
views
News:
FULL: NGS Data Analysis Workshop for Beginners in Munich (29 June - 1 Juli 2016)
RNA-Seq
next-gen
NGS
updated 8 months ago by
Ram
38k • written 7.1 years ago by
David Langenberger
9.9k
2
votes
0
replies
3.0k
views
News:
Short Course And Workshop On Rna-Seq Analysis
RNA-seq
updated 25 days ago by
Ram
38k • written 9.2 years ago by
jan.christian
▴ 60
4
votes
3
replies
3.0k
views
News:
CAFE v4.0 available
CAFE
phylogenetics
News
updated 3.5 years ago by
2018110660
• 0 • written 6.0 years ago by
Ben Fulton
▴ 150
3
votes
0
replies
3.0k
views
News:
Tumorportal - A Tool For Exploring A Pan-Cancer Dataset
tcga
cancer-genomics
updated 24 days ago by
Ram
38k • written 9.1 years ago by
Malachi Griffith
19k
12
votes
8
replies
3.0k
views
News:
'Potential Rna-Dna Binding Site In Alu Repeat', Or 'Why Should I Allow Multiple Mapping Positions When Analyzing Chipseq Data?'
chipseq
rna
updated 28 days ago by
Ram
38k • written 9.7 years ago by
David Langenberger
9.9k
7
votes
1
reply
2.9k
views
News:
A Multi-Split Mapping Algorithm For Circular Rna, Splicing, Trans-Splicing, And Fusion Detection
ngs
mapping
updated 25 days ago by
Ram
38k • written 9.1 years ago by
David Langenberger
9.9k
2
votes
2
replies
2.9k
views
News:
Upcoming Hands-On NGS Data Analysis Workshops 2018
RNA-Seq
DNA-Seq
Workshop
Mapping
Quality Control
News
5.3 years ago by
David Langenberger
9.9k
10
votes
1
reply
2.9k
views
News:
Ucsc: Dna Sequences In Web Pages Indexed By Bing.Com / Microsoft Research (All Phenotype And Literature Tracks)
web
ucsc
updated 25 days ago by
Ram
38k • written 9.2 years ago by
Pierre Lindenbaum
153k
3
votes
0
replies
2.9k
views
News:
Statistics and R for the Life Sciences from Harvard University (Start: 19 Jan 2015)
edX
statistics
updated 12 months ago by
Ram
38k • written 8.2 years ago by
rtliu
★ 2.2k
0
votes
0
replies
2.9k
views
News:
Travel and accommodation bursaries for workshops on Gene expression analysis, Metabolomics, RAD analysis or Population genomics in Environmental ‘Omi…
workshop
updated 16 months ago by
Ram
38k • written 8.7 years ago by
Daniel
★ 3.9k
5
votes
0
replies
2.8k
views
News:
Penn State now offers an Online Graduate Certificate: Applied Bioinformatics
bioinformatics-education
updated 19 days ago by
Ram
38k • written 8.6 years ago by
Istvan Albert
97k
3
votes
0
replies
2.8k
views
News:
Introduction to Python for Biologists and Advanced Python for Biologists courses
Python
updated 11 weeks ago by
Ram
38k • written 7.8 years ago by
Bert Overduin
★ 3.7k
3
votes
2
replies
2.8k
views
News:
Bioinformatics On Windows And Windows Cloud
windows
cloud
updated 4 weeks ago by
Ram
38k • written 10.4 years ago by
xied75
▴ 20
4
votes
2
replies
2.8k
views
News:
NCBI NOW (Next generation sequencing Online Workshop) October 13 - 23 , 2015
NCBI
mapping
DNA-Seq
RNA-Seq
NGS
News
updated 4.9 years ago by
f.hashemigorji
• 0 • written 7.5 years ago by
rtliu
★ 2.2k
0
votes
0
replies
2.8k
views
News:
Bioinformatics Hands-On Workshop: Discovering standard and non-standard RNA transcripts
workshop
transcripts
fusion-transcripts
RNA-Seq
updated 15 months ago by
Ram
38k • written 8.7 years ago by
David Langenberger
9.9k
0
votes
1
reply
2.8k
views
News:
Workshop: 16S rRNA gene Metabarcoding (Berlin. 3-7 April 2017)
R
next-gen
alignment
blast
News
4.2 years ago by
carlopecoraro2
★ 2.3k
4
votes
0
replies
2.8k
views
News:
New simulation dataset for 'A benchmark for RNA-seq quantification pipelines'
RNA-Seq
News
6.8 years ago by
Michael Love
★ 2.5k
0
votes
0
replies
2.8k
views
News:
WORKSHOP: Computational Approaches to Study Biological Mechanisms. Bringing together large scale ‘omics approaches and classical computational modell…
workshop
updated 16 months ago by
Ram
38k • written 8.7 years ago by
Daniel
★ 3.9k
6
votes
7
replies
2.8k
views
News:
New in DiffBind: dba.plotProfile() - Peak profiles and profile heatmaps
DiffBind
ChIP-seq
deepTools
visualization
ATAC-seq
6 months ago by
Rory Stark
★ 1.7k
2
votes
0
replies
2.8k
views
News:
New article on TCGA data & useful resource: Comprehensive Genomic Characterization of Long Non-coding RNAs across Human Cancers
RNA-Seq
long-noncoding-RNAs
updated 6 months ago by
Ram
38k • written 7.5 years ago by
EagleEye
7.4k
2
votes
3
replies
2.8k
views
News:
Summer Course On Analyzing Next-Generation Sequencing Data, June 10-20, Kellog Biological Station, Michigan State University
education
updated 4 weeks ago by
Ram
38k • written 10.2 years ago by
Istvan Albert
97k
10
votes
0
replies
2.8k
views
News:
Cfp: Camda 2013 Challenge: Big Data In Life Sciences
ngs
conference
updated 4 weeks ago by
Ram
38k • written 10.0 years ago by
okko.clevert
▴ 240
9
votes
5
replies
2.7k
views
News:
The NIH Software Discovery Index | We invite your comments
NIH
software-catalog
updated 14 months ago by
Ram
38k • written 8.5 years ago by
Sean Davis
26k
4
votes
0
replies
2.7k
views
News:
Wed 9/25 On-Line, Live Tutorial For Integrated Genome Browser
visualization
ChIP-seq
RNA-seq
igv
genome-browser
updated 27 days ago by
Ram
38k • written 9.5 years ago by
Ann
★ 2.3k
7
votes
0
replies
2.7k
views
News:
Correction for "A benchmark for RNA-seq quantification pipelines"
rna-seq
News
6.8 years ago by
rairizarry
▴ 70
13
votes
2
replies
2.7k
views
News:
A Summary Of All Encode Related News On The Openhelix Blog: Encode Floods The News
encode
updated 4 weeks ago by
Ram
38k • written 10.6 years ago by
Istvan Albert
97k
22
votes
3
replies
2.7k
views
News:
Biostar: 10,000 Question Milestone
meta
updated 4 weeks ago by
Ram
38k • written 9.8 years ago by
Istvan Albert
97k
5
votes
1
reply
2.7k
views
News:
Canadian Bioinformatics Workshops Series Announced For 2014
training
updated 26 days ago by
Ram
38k • written 9.3 years ago by
Obi Griffith
20k
3
votes
0
replies
2.7k
views
News:
DNA Variant Calling Workshop
SNP
next-gen
News
6.8 years ago by
Adele Feuerstein
▴ 460
0
votes
0
replies
2.7k
views
News:
LAST CALL: Hands-On NGS Data Analysis Workshops 2014
NGS
microRNA
workshop
RNA-Seq
updated 21 days ago by
Ram
38k • written 8.7 years ago by
David Langenberger
9.9k
4
votes
4
replies
2.6k
views
News:
Join The Dnanexus Developer Program
api
cloud
updated 28 days ago by
Ram
38k • written 9.8 years ago by
akislyuk
▴ 30
0
votes
0
replies
2.6k
views
News:
Workshops in Bioinformatics in 2019
assembly
RNA-Seq
R
Python
News
4.2 years ago by
carlopecoraro2
★ 2.3k
6
votes
1
reply
2.6k
views
News:
GMOD Online Training 2014 coming up
galaxy
chado
gmod
annotation
updated 21 days ago by
Ram
38k • written 8.9 years ago by
Mary
11k
11
votes
1
reply
2.6k
views
News:
NGS Data Analysis Workshop for Beginners in Munich (full)
RNA-Seq
training
NGS
workshop
updated 8 months ago by
Ram
38k • written 6.7 years ago by
David Langenberger
9.9k
4
votes
0
replies
2.6k
views
News:
Python for Scientists - FREE Ebook from O'Reilly
python
Data Analysis
News
7.5 years ago by
rtliu
★ 2.2k
2
votes
0
replies
2.6k
views
News:
WORKSHOP - Introduction to Python for biologists
python
RNA-Seq
next-gen
SNP
News
6.1 years ago by
oliverhooker
▴ 110
1
vote
0
replies
2.6k
views
News:
Workshop: Oxford Nanopore MinION Sequencing - Data Handling, Analysis and Applications, 1 November 2016, Edinburgh
training
minION
Oxford Nanopore
bioinformatics
News
6.5 years ago by
Bert Overduin
★ 3.7k
8
votes
0
replies
2.6k
views
News:
Plos Computational Biology: Translational Bioinformatics
publications
plos
updated 4 weeks ago by
Ram
38k • written 10.1 years ago by
Medhat
9.5k
4
votes
3
replies
2.6k
views
News:
-max_target_seqs 1 in NCBI standalone BLAST does not do what you think it does
software error
blast
News
updated 4.5 years ago by
Devon Ryan
103k • written 4.5 years ago by
5heikki
11k
10
votes
17
replies
2.6k
views
7 follow
News:
Tell us what you think of the ENA browser?
ena
News
updated 15 months ago by
predeus
★ 1.8k • written 6.4 years ago by
Laura
★ 1.8k
0
votes
0
replies
2.6k
views
News:
Call-for-Papers in Epigenomics (BMRI, impact factor 2.7)
epigenomics
papers
updated 18 days ago by
Ram
38k • written 8.5 years ago by
benoukraf
• 0
6
votes
1
reply
2.6k
views
News:
"Oxford University Press to Publish NAR Genomics and Bioinformatics"
journal
News
3.9 years ago by
Pierre Lindenbaum
153k
0
votes
3
replies
2.5k
views
News:
Physalia-courses: 16S rRNA gene Metabarcoding Workshop
SNP
gene
rna-seq
sequencing
sequence
News
4.5 years ago by
carlopecoraro2
★ 2.3k
3
votes
0
replies
2.5k
views
News:
SeqAhead - COST - Bioinformatics for Non-Coding RNAs: State-of-the-art Training Workshop: 30/6-3/7/2014, Athens, Greece
RNA-Seq
workshop
lncRNA
microRNA
updated 21 days ago by
Ram
38k • written 8.9 years ago by
IV
★ 1.3k
2
votes
0
replies
2.5k
views
News:
2nd Edition of the Biostar Handbook. New online course starts now.
biostar handbook
News
4.2 years ago by
Istvan Albert
97k
0
votes
0
replies
2.5k
views
News:
course: Advanced R Programming. Berlin
R
Programming
News
5.2 years ago by
carlopecoraro2
★ 2.3k
1
vote
0
replies
2.5k
views
News:
Bioconductor/R Workshop For High-Throughput Data Analysis (Web Version)
microarray
bioconductor
online
next-gen
updated 27 days ago by
Ram
38k • written 9.5 years ago by
voisin.greg.consultant
▴ 10
7
votes
1
reply
2.5k
views
News:
Integrated Genome Browser version 8.3 released - new native installer
ChIP-Seq
RNA-Seq
igv
igb
updated 12 months ago by
Ram
38k • written 8.2 years ago by
Ann
★ 2.3k
1,000 results • Page
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smoothing or binning bigWig file
List of Ongoing and Planned Long Read Sequencing studies?
Are We Rude/Do We Expect Too Much From People Asking Questions On This Forum?
Answer: Read lengths greater than insert length
A: Changing Output From Gene ID to Symbol When Running findMarkers from Scran
Answer: BLAST Database error: No alias or index file found for nucleotide database
Answer: How to get gene from PSIBLAST resuts
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Comment: split fasta file to train deep learning model
by
pinheirofabiano
▴ 10
@shenwei356, thank you very much for your help, perfect! But now I realized that some fasta sequences contain the letter "B", which is ou…
Comment: Most efficient way to run Diamond against a very very large database (i.e., NCBI
by
Mensur Dlakic
★ 23k
I think it depends on the speed of your local disks and the memory amount. On a single node, breaking up the database doesn't sound like a …
Comment: Sample size for population genetics
by
Jeremy Leipzig
21k
Other populations just make the model harder to generalize, not easier.
Comment: Are We Rude/Do We Expect Too Much From People Asking Questions On This Forum?
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Vincent Laufer
★ 2.5k
i think there is some of that - my most upvoted comment of all time was a dismissive comment i made while extremely tired. for context i ha…
Comment: Molecular biologist / clinical pharmacologist (f/m/d)
by
Jeremy
▴ 770
Is this job on site in Vienna or remote?
Comment: smoothing or binning bigWig file
by
rls_08
▴ 40
if you use bigwigCompare , that would not create a sliding window, but instead, it will output the mean for each bin, according to the -bin…
Comment: Sample size for population genetics
by
zimmer.schweiz
• 0
Thank you so much for your answer. For common polygenic diseases, would it make sense to increase the number of populations sampled, in ord…
Answer: Sample size for population genetics
by
Jeremy Leipzig
21k
For a rare penetrant monogenic disease? A few cases. For a common polygenic disease or trait? 500k-10M
Answer: using GRanges metadata to constrain overlap searches between objects
by
seidel
11k
Rather than do all overlaps all the time for all samples, why not restrict the data by sample when you can. The code below works about 4 ti…
Comment: How to get gene from PSIBLAST resuts
by
Tom
• 0
Hello, thank you for your answer, I have a question, Why the information from the GFF file and from the feature table is different? I see …
Comment: SNP ID (rsID) to Chr no. and Position
by
Jewahir
• 0
Yeah, thank you for that!!
Comment: 1000 genomes hg38 with dbSNP rsid
by
Ram
38k
It should be pretty straightforward. Just to save you some pain, run these on the 1000g VCF once you download it: 1. `vt decompose -s` to …
Comment: 1000 genomes hg38 with dbSNP rsid
by
Vince
▴ 150
Yeah, I had some hope that I wouldn't need to mess with doing this ...
Answer: counting the unmapped reads
by
chemkhi.ali13
• 0
> Hi all, > > I have a sam file, my supervisor asked me to count the number of > unmapped reads, which command I should use? > > sam…
Comment: 1000 genomes hg38 with dbSNP rsid
by
Ram
38k
In that case, you'll need to get the VCF from 1000g - that's probably going to be the only place where individual level data is available, …
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