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8
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2
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770
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News: FINAL CALL - Single-Cell RNA-Seq Data Analysis: A Practical Introduction (May 6-8, 2024 in Berlin)
single-cell sequencing
20 days ago by David Langenberger 11k
3
votes
2
replies
556
views
News: Announcement: Research Topic "Mechanistic, Machine Learning and Hybrid Models of the 'Other' Endocrine Regulatory Systems in Health and Disease", Vol…
mathematical-modelling endocrinology ML systems-biology machine-learning
26 days ago by Johannes W. Dietrich • 0
12
votes
2
replies
440
views
News: 8th Berlin Summer School in NGS Data Analysis (June 10-14, 2024) - already half booked
Workshop RNA-Seq DNA-Seq Illumina
15 days ago by David Langenberger 11k
0
votes
0
replies
199
views
News: Online course: Reproducibility in Bioinformatics
Singularity Version-Control Docker Containers
updated 27 days ago by 43k • written 27 days ago by ★ 2.5k
0
votes
0
replies
186
views
News: Online course: Meta-analysis in R
Meta-Analysis Statistics R
updated 6 days ago by 43k • written 6 days ago by ★ 2.5k
0
votes
0
replies
181
views
News: Online course: Meta-analysis in R
Meta-Analysis R
updated 13 days ago by 43k • written 13 days ago by ★ 2.5k
0
votes
0
replies
176
views
News: Online course: Network Analysis in R
NetworkAnalyis R
11 days ago by carlopecoraro2 ★ 2.5k
1
vote
0
replies
172
views
News: Landscape Genomics course in Switzerland
LFMM Landscape-Genomics Sambada R Local-Adaptation
updated 16 days ago by 43k • written 19 days ago by ★ 2.5k
0
votes
0
replies
171
views
News: Final Call - Bioinformatics Pipeline Development with Nextflow (May 27-29, 2024)
workshop RNA-seq nextflow DNA-seq
updated 8 days ago by 43k • written 8 days ago by 11k
0
votes
0
replies
171
views
News: Course - Agent-Based Modelling Using NetLogo - University of Lodz, Poland
Netlogo Individual-Based-Models Agent-Based-Models
updated 6 days ago by 43k • written 7 days ago by ★ 2.5k
0
votes
0
replies
162
views
News: Online course: Analysis of Prokaryotic Pangenomes (Last call)
Prokaryotic Bacterial-Genomics Pangenomics
updated 27 days ago by 43k • written 27 days ago by ★ 2.5k
0
votes
0
replies
144
views
News: Online course: Eukaryotic Metabarcoding
Metabarcoding Biodiversity R eDNA
23 days ago by carlopecoraro2 ★ 2.5k
0
votes
0
replies
141
views
News: Deadline Approaching: PETs for Public Health Challenge
privacy public-health-challenge
updated 9 days ago by 43k • written 9 days ago by ▴ 380
0
votes
0
replies
141
views
News: Online course: Food Traceability Using Genomic Tools
Nanopore Genomic-Tools Illumina Food-Traceability
updated 21 days ago by 43k • written 21 days ago by ★ 2.5k
1
vote
0
replies
127
views
News: Online Live Course: Introduction to Machine Learning in R
Rstats TScourses Rlang Rproject
updated 13 days ago by 43k • written 14 days ago by ▴ 70
0
votes
0
replies
127
views
News: upcoming online statistical courses
Statistics R Data-Analysis
updated 3 days ago by 43k • written 4 days ago by ★ 2.5k
2
votes
0
replies
121
views
News: Online Course Generalised Additive Mixed Models (GAMM): modelling space-time correlation structures
GAMM Rlang Rstats Rproject
updated 13 days ago by 43k • written 14 days ago by ▴ 70
2
votes
0
replies
120
views
News: Online Course Introduction to Network Analysis and Modelling
Python Network-Analysis
updated 13 days ago by 43k • written 14 days ago by ▴ 70
0
votes
0
replies
117
views
News: Online course: Multivariate Data Analysis with R and vegan
Multivariate-Statistics vegan R
updated 16 days ago by 43k • written 17 days ago by ★ 2.5k
2
votes
0
replies
115
views
News: Online course: Genome Annotation
Genome-Assembly RNA-seq Genome-Annotation
updated 15 days ago by 43k • written 15 days ago by ★ 2.5k
2
votes
0
replies
112
views
News: Course Functional Programming with R
Rstats TScourses Rproject KeepLearning Rlang
14 days ago by Transmitting Science communication ▴ 70
3
votes
0
replies
108
views
News: Interested in Spatial Omics?
Bioconductor Spatial-Omics Spatial-Transcriptomics
updated 1 day ago by 43k • written 1 day ago by ★ 2.5k
0
votes
0
replies
80
views
News: hands-on introduction to generalized linear models (GLMs) using R
Generalized-Linear-Models GLM R
updated 16 hours ago by 43k • written 1 day ago by ★ 2.5k
0
votes
0
replies
78
views
News: Online course: DNA methylation
Pacbio Nanopore DnaMethylation Evolution
3 days ago by carlopecoraro2 ★ 2.5k
0
votes
0
replies
75
views
News: 8th Berlin Summer School in NGS Data Analysis - Apply Now
variantcalling DNAseq illumina RNAseq transcriptomics
21 hours ago by David Langenberger 11k
25 results • Page 1 of 1
Recent Votes
Answer: Figures are disappeared from html report of SnpEff
Comment: How to trim transcripts using information from NCBI contamination screen report
Filtering rRNA contamination (indicated by GC content plots) from RNA-seq data
Filtering rRNA contamination (indicated by GC content plots) from RNA-seq data
A: What is the VEP Impact column?
is oxford nanopore technology data paired or single end sequencing?
is oxford nanopore technology data paired or single end sequencing?
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Recent Awards • All
Popular Question to Hamtaro ▴ 50
Popular Question to Nicolas Rosewick 11k
Popular Question to Assa Yeroslaviz ★ 1.8k
Popular Question to Keem Uarren Eiryll • 0
Centurion to analyst ▴ 30
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Popular Question to camillab. ▴ 160
Recent Replies
Comment: Is it possible to get a list of representative genomes from a past RefSeq releas by GenoMax 141k
At this point you should email NCBI help desk and ask them this question. If you get an answer then please post it back in this thread.
Comment: Figures are disappeared from html report of SnpEff by Pierre Lindenbaum 161k
the javascript in your html is deprecated or your firefox is just tool old.
Comment: Why gatk VariantAnnotator required bam and coverage files by Pierre Lindenbaum 161k
> I would like to ask why they may require the bam file for this function? hum.. if you want to add the coverage, where do you think gatk …
Comment: Figures are disappeared from html report of SnpEff by analyst ▴ 30
By following above approach I got this ![enter image description here][1] [1]: /media/images/b47490eb-d4c4-4f39-a7b2-f5b7b6b8
Comment: Highest variable features in single cell data by Kazo • 0
I apologize for the confusion. What I meant to say is that, for example, the Trbv17 gene appears among the variable genes. However, when I …
Answer: why renaming Idents in Seurat object doesn't work? by Assa Yeroslaviz ★ 1.8k
I manage to find a workwround, but I don't understand what I did wrong here. my solution was to extract the cluster column as vector and…
Answer: Finding orthologs between genome error by Adrian Altenhoff ★ 1.1k
Hi, thanks for letting us know. In a recent software update, we introduced a problem with the written splice information in the cached …
Comment: Fetch table from clinvar database according to a list of rsid by ashaneev07 ▴ 20
so which one should i prefer? i don't need the entire results i need the condition-Germline table only. (for eg:-from, https://www.ncbi.nlm…
Comment: To get p-values for the TPM by dsull ★ 5.8k
OK, not sure why your intention is to use RSEM p-values for, but at least tell us the commands you ran then otherwise how are we supposed t…
Comment: Fetch table from clinvar database according to a list of rsid by Pierre Lindenbaum 161k
> Don't forget to follow up on your threads. If an answer was helpful, you should upvote it; if the answer resolved your question, you shou…
Comment: different FeatureCounts output for the same data by sehriban.buyukkilic ▴ 10
Sure, I'll inquire about the version of Rsubread. I'll keep you posted if it works :) Thanks
Comment: different FeatureCounts output for the same data by sehriban.buyukkilic ▴ 10
Yeah, let me show you my featureCounts result, it looks like this. It's too low. [1]: /media/images/eb8293fe-e6ae-4b02-92e2-0ba2075b
Comment: Adding CB tag to bam file by Pierre Lindenbaum 161k
samtools addreplacerg is for read groups. This is not what OP asked.
Comment: Adding CB tag to bam file by Maria • 0
When I try ``` samtools addreplacerg -r "@CB\tID:$cell" -o $cell.bam $LINE``` the CB tag gets add to the header, but the tag in every line …
Answer: Figures are disappeared from html report of SnpEff by Pierre Lindenbaum 161k
the remote website providing the javascript or/and the images is down or you're now behind a proxy. Check the firefox console: https://fire…
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