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152 results • Page 1 of 4
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726
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161
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108k
views
100 follow
News: The Biostar Handbook. A bioinformatics e-book for beginners.
training handbook
updated 5 days ago by 1.6k • written 6.3 years ago by 96k
32
votes
6
replies
12k
views
7 follow
News: Ncbi Releases Entrez Direct, The Entrez Utilities On The Unix Command Line
ncbi genbank pubmed command-line entrez
updated 17 days ago by 38k • written 9.1 years ago by 153k
17
votes
6
replies
8.4k
views
News: Final registration deadline: September 15th - Bioinformatics Hands-On NGS Data Analysis Workshops 2014
methylation RNA-seq
updated 13 days ago by 38k • written 9.0 years ago by 9.9k
9
votes
5
replies
8.2k
views
News: A New Rest Based Api For Kegg: Kyoto Encyclopedia Of Genes And Genomes
kegg api
updated 24 days ago by 38k • written 10.3 years ago by ▴ 50
15
votes
18
replies
7.3k
views
6 follow
News: New Free Community Tutorial Website For Bioinformatics Learning
ChIP-seq genome snp RNA-seq
updated 20 days ago by 38k • written 9.7 years ago by ▴ 610
21
votes
7
replies
7.1k
views
News: Survey: Rna-Seq Analysis For Differential Gene/Transcript Expression [Updated With Results]
transcript RNA-seq gene
updated 24 days ago by 38k • written 10.3 years ago by ▴ 250
12
votes
8
replies
6.4k
views
News: rRNA Depletion / Poly-A Selection Responsible for RNA-seq Bias
rRNA-depletion RNA-seq-bias
updated 13 days ago by 38k • written 8.7 years ago by ▴ 640
15
votes
3
replies
6.4k
views
News: Top Bioinformatics Contributions Of 2013
bioinformatics
updated 18 days ago by 38k • written 9.3 years ago by ★ 1.1k
19
votes
11
replies
6.3k
views
News: Solid Software Tools: Denovo Assembly/Xsq Tools Pipeline Mirrored At Biostar
SOLID
updated 25 days ago by 38k • written 10.5 years ago by 96k
31
votes
4
replies
6.1k
views
News: Rosalind: A Novel Bioinformatics Education Platform
education
updated 25 days ago by 38k • written 10.5 years ago by ▴ 310
25
votes
7
replies
5.8k
views
News: Pubmed Commons : A System That Enables Researchers To Share Their Opinions About Scientific Publications
ncbi pubmed
updated 18 days ago by 38k • written 9.4 years ago by 153k
45
votes
19
replies
5.6k
views
8 follow
News: Gamestorming For Bioinformatics
gamestorming
updated 25 days ago by 38k • written 10.5 years ago by 27k
6
votes
0
replies
5.0k
views
News: Game Changer? Illumina Nextseq 500
illumina
updated 17 days ago by 38k • written 9.2 years ago by ★ 1.3k
6
votes
7
replies
4.8k
views
News: Illumina Nextseq 500 And Hiseq X Ten: Newer Tech Lowering Cost Per Mbp
Illumina
updated 17 days ago by 38k • written 9.2 years ago by ▴ 640
2
votes
0
replies
4.7k
views
News: LAST CALL: Two days left to register for our workshop 'RNA-seq Bioinformatics: A Practical Introduction'
RNA-Seq workshop
updated 13 days ago by 38k • written 8.7 years ago by 9.9k
0
votes
0
replies
4.6k
views
News: Bioinformatics Training Courses - Metagenomics and NGS data analysis - Sydney and Canberra, Australia
metagenomics training next-gen-sequencing
updated 13 days ago by 38k • written 8.8 years ago by 49k
7
votes
3
replies
4.2k
views
News: Pathway Commons 2 - Search And Visualize Public Biological Pathway Information. Single Point Of Access.
api cytoscape
updated 18 days ago by 38k • written 9.3 years ago by ★ 1.2k
3
votes
0
replies
4.2k
views
News: Free Online Harvardx Course, Data Analysis For Genomics, Starts April 7
methylation bioconductor ChIP-seq RNA-seq R
updated 13 days ago by 38k • written 9.0 years ago by ★ 2.2k
24
votes
7
replies
4.0k
views
News: #Bioinformatics Crowdcoding
crowd-coding
updated 20 days ago by 38k • written 9.7 years ago by 153k
1
vote
0
replies
4.0k
views
News: Hands-On Training in RNA-seq Bioinformatics: A Practical Introduction - Mapping, Visualization, Basic Analyses
next-gen RNA-Seq workshop
updated 13 days ago by 38k • written 8.8 years ago by 9.9k
23
votes
7
replies
4.0k
views
News: Research accounts on GitHub
github git
updated 13 days ago by 38k • written 8.9 years ago by 153k
8
votes
6
replies
3.7k
views
News: Last Call: Upcoming Workshop - Rna-Seq Bioinformatics: A Practical Introduction
RNA-seq
updated 24 days ago by 38k • written 10.2 years ago by 9.9k
6
votes
9
replies
3.6k
views
News: 1000 Genomes : The Initial Phase 3 variant list and phased genotypes.
1000genomes
updated 13 days ago by 38k • written 8.7 years ago by 153k
3
votes
3
replies
3.6k
views
News: A Tale Of Next Generation Sequencing Platforms: Ion Torrent, Pacific Biosciences And Illumina Miseq
sequencing
updated 26 days ago by 38k • written 10.6 years ago by 96k
3
votes
2
replies
3.5k
views
News: Course/Workshop: Informatics For Rna-Sequence Analysis (June, 2013)
RNA-seq
updated 24 days ago by 38k • written 10.2 years ago by 20k
0
votes
0
replies
3.5k
views
News: Journal Of Bioinformatics Research Studies- Call For Papers
publication biology
updated 13 days ago by 38k • written 9.0 years ago by • 0
11
votes
2
replies
3.4k
views
News: Coursera: Computational Molecular Evolution
course
updated 23 days ago by 38k • written 9.8 years ago by 153k
5
votes
2
replies
3.4k
views
News: Tuesday 10/29 Live Tour Of New Features In Integrated Genome Browser 8
genome-browser RNA-seq ChIP-seq
updated 19 days ago by 38k • written 9.4 years ago by ★ 2.3k
6
votes
1
reply
3.4k
views
News: Symposium And Rna-Seq Data Analysis Workshop Charlotte May 13-14
RNA RNA-seq training
updated 13 days ago by 38k • written 9.0 years ago by ★ 2.3k
9
votes
4
replies
3.4k
views
News: Conference Announcement - Camda 2013
conference classification
updated 24 days ago by 38k • written 10.2 years ago by ▴ 240
5
votes
1
reply
3.3k
views
News: Broad Gatk Haplotypecaller Speed Improved 2-4 X By Cooperation With Intel, And Incremental Multi-Sample Calling Made Possible!
gatk variant-calling
updated 13 days ago by 38k • written 9.0 years ago by ★ 5.2k
12
votes
7
replies
3.3k
views
News: Welcome Ensembl REST with more endpoints!
ensembl rest-api
updated 10 days ago by 38k • written 8.4 years ago by ★ 5.2k
2
votes
0
replies
3.3k
views
News: Bioinformatics Open Days 2Nd Edition - 14 And 15 Of March, 2013 At The University Of Minho, Campus Gualtar, Braga, Portugal.
conference
updated 24 days ago by 38k • written 10.2 years ago by ▴ 20
17
votes
9
replies
3.2k
views
News: My Ncbi Curriculum Vitae Web Application: Sciencv
ncbi
updated 19 days ago by 38k • written 9.5 years ago by 153k
5
votes
2
replies
3.2k
views
News: Summary of AGBT 2015
AGBT2015 AGBT
updated 3 days ago by 38k • written 8.1 years ago by ▴ 640
8
votes
1
reply
3.1k
views
News: LAST DAY TO REGISTER - NGS Workshop 2015: A Practical Introduction to NGS Data Analysis (Oxford, UK)
RNA-Seq workshop
updated 10 days ago by 38k • written 8.4 years ago by 9.9k
11
votes
0
replies
3.1k
views
News: BWA 0.7.11 is out, supports ALT contigs
BWA
updated 6 days ago by 38k • written 8.2 years ago by 103k
2
votes
0
replies
3.1k
views
News: Promoter Design Challenge: Design A Plant Promoter And We Will Construct It.
plant-promoter transcription-factor
updated 24 days ago by 38k • written 10.1 years ago by ▴ 20
12
votes
0
replies
3.1k
views
News: Looking For Feedback On The Json Output For Ncbi E-Utilities
ncbi eutils
updated 24 days ago by 38k • written 10.3 years ago by ▴ 360
9
votes
3
replies
3.0k
views
News: New Human Genome Assembly (Grch38) Released
human-genome assembly
updated 18 days ago by 38k • written 9.2 years ago by 153k
0
votes
0
replies
3.0k
views
News: sRNAbench: profiling of small RNAs and its sequence variants in single or multi-species high-throughput experiments
webserver isomiRs microRNA small-RNA
updated 10 days ago by 38k • written 8.4 years ago by 9.9k
2
votes
0
replies
3.0k
views
News: Short Course And Workshop On Rna-Seq Analysis
RNA-seq
updated 17 days ago by 38k • written 9.2 years ago by ▴ 60
12
votes
8
replies
3.0k
views
News: 'Potential Rna-Dna Binding Site In Alu Repeat', Or 'Why Should I Allow Multiple Mapping Positions When Analyzing Chipseq Data?'
chipseq rna
updated 20 days ago by 38k • written 9.7 years ago by 9.9k
3
votes
0
replies
2.9k
views
News: Tumorportal - A Tool For Exploring A Pan-Cancer Dataset
tcga cancer-genomics
updated 16 days ago by 38k • written 9.1 years ago by 19k
7
votes
1
reply
2.9k
views
News: A Multi-Split Mapping Algorithm For Circular Rna, Splicing, Trans-Splicing, And Fusion Detection
ngs mapping
updated 17 days ago by 38k • written 9.1 years ago by 9.9k
10
votes
1
reply
2.9k
views
News: Ucsc: Dna Sequences In Web Pages Indexed By Bing.Com / Microsoft Research (All Phenotype And Literature Tracks)
web ucsc
updated 17 days ago by 38k • written 9.2 years ago by 153k
5
votes
0
replies
2.8k
views
News: Penn State now offers an Online Graduate Certificate: Applied Bioinformatics
bioinformatics-education
updated 11 days ago by 38k • written 8.6 years ago by 96k
3
votes
2
replies
2.8k
views
News: Bioinformatics On Windows And Windows Cloud
windows cloud
updated 24 days ago by 38k • written 10.3 years ago by ▴ 20
2
votes
3
replies
2.8k
views
News: Summer Course On Analyzing Next-Generation Sequencing Data, June 10-20, Kellog Biological Station, Michigan State University
education
updated 24 days ago by 38k • written 10.1 years ago by 96k
10
votes
0
replies
2.7k
views
News: Cfp: Camda 2013 Challenge: Big Data In Life Sciences
ngs conference
updated 24 days ago by 38k • written 10.0 years ago by ▴ 240
152 results • Page 1 of 4
Recent Votes
Answer: What is the difference between agilent_wholegenome and agilent_wholegenome_4x44k
C: Converting an output de-novo transcriptome assembled with Trinity to a .gff3 fil
unplaced, unlocalized, ... scaffolds from hg19 to GRCh38
C: extracting heterozygous snp from a vcf file
Comment: March 13-16: Virtual Nextflow and nf-core training event in 5 languages
Answer: Where do find virulence gene information in a gff/gtf file?
Comment: split fasta file to train deep learning model
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Popular Question to santos48 ▴ 40
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Recent Replies
Answer: samtools idxstats not removing ChrM by Jen ▴ 40
![enter image description here][1] I think I got it to work using "MT" rather than "ChrM" (code below) samtools idxstats chipse…
Answer: how to get pfam id of proteins belonging to a particular family along with seque by GenoMax 126k
Visit: https://www.uniprot.org/uniprotkb?query=(taxonomy_id:9606) Click on `customize columns`. Search with keyword `pfam` and check the…
Comment: how to get pfam id of proteins belonging to a particular family along with seque by Pierre Lindenbaum 153k
use the data in the download section ? $ wget -qO - "https://ftp.ebi.ac.uk/pub/databases/interpro/current_release/protein2ipr.dat.gz" …
Comment: Problem in converting SAM to BAM file by DROP SEQ by benformatics 3.4k
i think picard is expecting read groups. you may need to add them: https://gatk.broadinstitute.org/hc/en-us/articles/360037226472-AddOrRepl…
Comment: samtools idxstats not removing ChrM by benformatics 3.4k
i'm not sure this is doing what you expect? you should try filtering your bam directly and then running idx stats samtools view -h yo…
Comment: samtools idxstats not removing ChrM by Jeremy Leipzig 21k
can we see the output from this? `samtools idxstats chipseq/results/bowtie2/PPARg/PPARg_Input_Rep1_aln_sorted.bam` conversely just as an e…
Comment: Nextflow Stringtie: command not found Error by ATpoint 70k
It's bad practice to delete posts that received an answer ( = a user invested time - in this case me but it of course applies generally). D…
Comment: Converting an output de-novo transcriptome assembled with Trinity to a .gff3 fil by EkHe • 0
Hi @juke34, if you're able, can you please clarify something for me (based on the answer you've given here)? Thanks a lot in advance. I als…
Answer: Practical Haplotype Graph -- Pathing Error by lcj34 ▴ 220
FYI - The latest PHG docker version (tag 1.4) has a fix for this issue.
Comment: Nextflow: No space left on device, process using output directory as input? by Maxime Garcia ▴ 220
Nextflow should only link inputs (unless stated otherwise), so even if you use outdir as input it should not be much of an issue, but still…
Comment: Problem in converting SAM to BAM file by DROP SEQ by lieven.sterck 14k
Hi https://www.biostars.org/u/126271/, welcome. it might be good to add some more info on your "question". Now it only shows an error mes…
Comment: Trying to install Roary with Conda results in error message by tobiwan • 0
Thank you for your answer I'm using Ubuntu 22.04.2 LTS, command line used: conda install roary. Or do you need a screenshot of the whole …
Comment: Nextflow: No space left on device, process using output directory as input? by colindaven 4.5k
Yes, don't use the outdir as an input. You might get infinite loops.
Comment: UnicodeDecodeError: 'utf-8' codec can't decode byte 0x8b in position 1: invalid by wangjincheng • 0
I tried unzipped file, it shows the same error
Comment: UnicodeDecodeError: 'utf-8' codec can't decode byte 0x8b in position 1: invalid by Pierre Lindenbaum 153k
> use python package to load and analysis vcf.gz files looks like it doesn't like gzipped file. Are you sure this software can read gzip…
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