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8
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761
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News: FINAL CALL - Single-Cell RNA-Seq Data Analysis: A Practical Introduction (May 6-8, 2024 in Berlin)
single-cell sequencing
18 days ago by David Langenberger 11k
3
votes
2
replies
550
views
News: Announcement: Research Topic "Mechanistic, Machine Learning and Hybrid Models of the 'Other' Endocrine Regulatory Systems in Health and Disease", Vol…
mathematical-modelling endocrinology ML systems-biology machine-learning
25 days ago by Johannes W. Dietrich • 0
12
votes
2
replies
435
views
News: 8th Berlin Summer School in NGS Data Analysis (June 10-14, 2024) - already half booked
Workshop RNA-Seq DNA-Seq Illumina
13 days ago by David Langenberger 11k
0
votes
0
replies
195
views
News: Online course: Reproducibility in Bioinformatics
Singularity Version-Control Docker Containers
updated 26 days ago by 43k • written 26 days ago by ★ 2.5k
0
votes
0
replies
183
views
News: Online course: Meta-analysis in R
Meta-Analysis Statistics R
updated 5 days ago by 43k • written 5 days ago by ★ 2.5k
0
votes
0
replies
177
views
News: Online course: Meta-analysis in R
Meta-Analysis R
updated 12 days ago by 43k • written 12 days ago by ★ 2.5k
0
votes
0
replies
171
views
News: Online course: Network Analysis in R
NetworkAnalyis R
9 days ago by carlopecoraro2 ★ 2.5k
1
vote
0
replies
168
views
News: Landscape Genomics course in Switzerland
LFMM Landscape-Genomics Sambada R Local-Adaptation
updated 15 days ago by 43k • written 17 days ago by ★ 2.5k
0
votes
0
replies
168
views
News: Final Call - Bioinformatics Pipeline Development with Nextflow (May 27-29, 2024)
workshop RNA-seq nextflow DNA-seq
updated 7 days ago by 43k • written 7 days ago by 11k
0
votes
0
replies
168
views
News: Course - Agent-Based Modelling Using NetLogo - University of Lodz, Poland
Netlogo Individual-Based-Models Agent-Based-Models
updated 5 days ago by 43k • written 5 days ago by ★ 2.5k
0
votes
0
replies
159
views
News: Online course: Analysis of Prokaryotic Pangenomes (Last call)
Prokaryotic Bacterial-Genomics Pangenomics
updated 26 days ago by 43k • written 26 days ago by ★ 2.5k
0
votes
0
replies
141
views
News: Online course: Eukaryotic Metabarcoding
Metabarcoding Biodiversity R eDNA
22 days ago by carlopecoraro2 ★ 2.5k
0
votes
0
replies
138
views
News: Deadline Approaching: PETs for Public Health Challenge
privacy public-health-challenge
updated 8 days ago by 43k • written 8 days ago by ▴ 380
0
votes
0
replies
137
views
News: Online course: Food Traceability Using Genomic Tools
Nanopore Genomic-Tools Illumina Food-Traceability
updated 20 days ago by 43k • written 20 days ago by ★ 2.5k
0
votes
0
replies
125
views
News: upcoming online statistical courses
Statistics R Data-Analysis
updated 2 days ago by 43k • written 3 days ago by ★ 2.5k
1
vote
0
replies
123
views
News: Online Live Course: Introduction to Machine Learning in R
Rstats TScourses Rlang Rproject
updated 12 days ago by 43k • written 12 days ago by ▴ 70
2
votes
0
replies
115
views
News: Online Course Generalised Additive Mixed Models (GAMM): modelling space-time correlation structures
GAMM Rlang Rstats Rproject
updated 12 days ago by 43k • written 12 days ago by ▴ 70
2
votes
0
replies
114
views
News: Online Course Introduction to Network Analysis and Modelling
Python Network-Analysis
updated 12 days ago by 43k • written 12 days ago by ▴ 70
0
votes
0
replies
113
views
News: Online course: Multivariate Data Analysis with R and vegan
Multivariate-Statistics vegan R
updated 15 days ago by 43k • written 15 days ago by ★ 2.5k
2
votes
0
replies
111
views
News: Online course: Genome Annotation
Genome-Assembly RNA-seq Genome-Annotation
updated 14 days ago by 43k • written 14 days ago by ★ 2.5k
2
votes
0
replies
107
views
News: Course Functional Programming with R
Rstats TScourses Rproject KeepLearning Rlang
13 days ago by Transmitting Science communication ▴ 70
0
votes
0
replies
74
views
News: Online course: DNA methylation
Pacbio Nanopore DnaMethylation Evolution
1 day ago by carlopecoraro2 ★ 2.5k
2
votes
0
replies
64
views
News: Interested in Spatial Omics?
Bioconductor Spatial-Omics Spatial-Transcriptomics
updated 11 hours ago by 43k • written 11 hours ago by ★ 2.5k
23 results • Page 1 of 1
Recent Votes
Comment: TCGA2STAT Error: Firehose connection
Answer: HaplotypeCaller - only SNPs
Comment: Bwa sampe - BGI
Comment: Redirection of Duplicate PMIDs
Answer: Redirection of Duplicate PMIDs
A: Should I Remove All Positions Containing A Gap In A Multiple Alignment Prior To
Should I Remove All Positions Containing A Gap In A Multiple Alignment Prior To Creating A Phylogenetic Tree?
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Recent Replies
Comment: GTF file for Rhinolophus sinicus by GenoMax 141k
I was able to get the GTF file. I tried the fasta genome and it seemed to work but I did not complete the download. If you choose to ignore…
Comment: some error in building kraken2 database by Art1ess • 0
I have 2 files output, no error logs... the .kreport file: 100.00 160136511 160136511 U 0 unclassified head .res…
Comment: TCGA2STAT Error: Firehose connection by LauferVA 4.2k
agree. from a data-centric (rather than software centric) standpoint, it shouldn't be hard to get the TCGA data you are looking for from o…
Comment: Redirection of Duplicate PMIDs by LauferVA 4.2k
yep. in this case id definitely start with the grant numbers themselves as others have indicated. i did not recommend this before due to un…
Comment: GTF file for Rhinolophus sinicus by atowns21 • 0
This download doesn't seem to work for me. There is a message on the website saying "Warning: contaminated. Status: RefSeq GCF_001888835.1 …
Answer: HaplotypeCaller - only SNPs by Pierre Lindenbaum 161k
Filter the vcf dowstream after haplotypecaller using bcftools or gatk variantfiltration
Answer: Gene set enrichment analysis differences between 2020 and 2024 by geneontologyhelp ▴ 360
We have releases about monthly in order to keep our data accurate and reflect current understanding. In 4 years, there have been about 40 r…
Comment: How do I use the STARSolo aligner with MGI DNBelab C series HT scRNAseq librarie by GenoMax 141k
Let us know when you find out. Would be a useful thing to know what the data looks like.
Comment: How do I use the STARSolo aligner with MGI DNBelab C series HT scRNAseq librarie by atowns21 • 0
Yes, that is a very good idea. Thanks for the help!
Comment: How do I use the STARSolo aligner with MGI DNBelab C series HT scRNAseq librarie by GenoMax 141k
Only thing would be to try them out. See if you can detect them in the data you have. You could also simply look for unique representativ…
Comment: How to calculate identity percentage between proteins contained in a FASTA file? by GenoMax 141k
`clustal omega` can calculate distance matrix between two proteins (makes sense if your proteins are of similar size). You could try that: …
Comment: Should I use unpaired reads from trimmomatic by swbarnes2 14k
If the unpaired are _2, files, the _1 must exist somewhere. But the simple answer is probably going to be to just use all the _2 only. Yo…
Comment: Is it Acceptable to Have Uniform Quality Scores in a FASTQ File? by GenoMax 141k
> The needless granularity (fake precision) was obvious from the start You are assuming that all data generated is always of great quality…
Answer: Blasting two protein sequences vs two nucleotide sequences by Istvan Albert 100k
There are various versions of blast, that search in translated spaces, see blastx and tblastn https://blast.ncbi.nlm.nih.gov/Blast.cgi …
Answer: Should I use unpaired reads from trimmomatic by Istvan Albert 100k
If you have lots of data, both paired and unpaired, then the best strategy is probably to treat them separately and merge the counts at the…
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