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Recent Replies
Comment: ADMIXTURE and R, color meaning on barplot in studing population ancestry, K valu
by
dr.fakharunnisa
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0
Hello
I am trying to concentrate on the github link provided by you but it is complicated for beginners perspective. I have run admixture …
Comment: ceres score in crispr screen
by
seidel
10k
I see. Well given the bowtie2 error, I would say the most straightforward thing to do is make sure you can run bowtie2. You can try this wi…
Answer: Can Singularity be installed on a single-node server or does it have to be HPC?
by
tothepoint
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710
Singularity is designed to be lightweight and efficient, making it suitable for deployment on both single-node servers and HPC environments.
Comment: RNA Editing data from RNA-seq
by
Genetics
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0
I donot have DNAseq data. HAve RNAseq fastq file.
Comment: RNA Editing data from RNA-seq
by
Genetics
•
0
Thank you for you reply.
I have fastq file(RNAseq data). As I want to use RNAItool which required input files as BAM.I have to conver fastq…
Answer: how to get an average ROC curve after 10-fold cross validation in r
by
Mensur Dlakic
★
22k
You can take the man of 10 values for each of those quantities except for ROC curve, but they won't necessarily be accurate. They will be c…
Comment: How to choose --mind value for plink SNPs filtering
by
Fabio Marroni
★
2.9k
Did the error message mention --mind? And how many individuals are in your data set? According to the [manual][1] you should set --mind to …
Comment: scATAC-seq workflow
by
bioinformatics.girl
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0
I've read this. Clearly I'm looking for a straightforward step-by-step clarification of the processing. Starting from my data that I briefl…
Comment: How to find the most frequent alternative-splicing event from DEXSEQ data?
by
STARDUST
•
0
To be honest, i wanted to know only **which type of change**. since you mentioned about the specific exons, if it is possible i wanted to k…
Comment: scATAC-seq workflow
by
Pierre Lindenbaum
152k
> if anyone could provide a straightforward workflow
https://www.frontiersin.org/articles/10.3389/fcell.2022.981859/full "scATACpipe: A …
Comment: DESeq2 results function runs very slow on Windows 10
by
i.sudbery
16k
This would also explain the performance difference - the code is running on multiple cores on the Apple, but only a single core on Windows.
Comment: RNA Editing data from RNA-seq
by
i.sudbery
16k
You usually need DNA sequencing data as well as RNAseq data to identify RNA editing events.
Comment: How to find the most frequent alternative-splicing event from DEXSEQ data?
by
i.sudbery
16k
What do you mean be "most frequent alternative splicing event"? Do you mean which type of change (cassette exon, alternative 5' splice-site…
Comment: High downstream gene expression
by
i.sudbery
16k
I don't see genes in this location on the standard sheep genome either. The image you've included above doesn't show the gene annotation. B…
Comment: f-index in treemix
by
kk.mahsa
▴
140
I found the answer and I share it with you.
setwd("directory/of/Treemix/results")
source("plotting_funcs.R")
get_f("…
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