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News: Bioinformatics Contest 2020. Call for problems
contest
updated 6 days ago by 39k • written 3.7 years ago by ▴ 830
2
votes
1
reply
2.4k
views
News: RNAseq data analysis with R/ Bioconductor - ONLINE COURSE
R RNA-Seq Bioconductor
updated 1 day ago by 39k • written 3.2 years ago by ★ 2.3k
8
votes
8
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2.3k
views
News: Coronavirus Genome Analysis: a new volume in the Biostar Handbook
biostar-handbook education
updated 1 day ago by 39k • written 3.3 years ago by 98k
0
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1
reply
1.7k
views
News: Course: Introduction to GWAS (BERLIN)
GWAS R Python Snakemake
updated 3 days ago by 39k • written 3.6 years ago by ★ 2.3k
8
votes
4
replies
1.6k
views
News: supporting vg users on biostars
variation-graph genome vg vgteam
updated 6 days ago by 39k • written 3.7 years ago by ★ 2.4k
6
votes
13
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1.5k
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News: Ensembl reduced functionality: 10th March-16th April 2020
BLAT VEP Ensembl service
updated 1 day ago by 39k • written 3.3 years ago by ★ 2.2k
1
vote
2
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1.5k
views
News: NCBI Datasets - try it out!
Assembly refseq genome ncbi
updated 1 day ago by 39k • written 3.2 years ago by ★ 3.5k
0
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1
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1.4k
views
News: :: FINALL CALL :: RNA-Seq Data Analysis Workshop for Beginners - Registraion to be closed
NGS RNA-Seq Training
updated 3 days ago by 39k • written 3.5 years ago by 9.9k
4
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0
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1.2k
views
News: ONLINE course - Metagenomics, metatranscriptomics, and multi'omics for microbial community studies
next-gen-sequencing
updated 1 day ago by 39k • written 3.2 years ago by ★ 2.3k
0
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1
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1.2k
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News: Online Workshop - A Practical Introduction to NGS Data Analysis (May 27-29,2020)
NGS DNA-seq Workshop
updated 15 minutes ago by 39k • written 3.1 years ago by 9.9k
1
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0
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1.2k
views
News: Population Genomics course online
R SNP next-gen
updated 1 day ago by 39k • written 3.2 years ago by ★ 2.3k
1
vote
0
replies
1.1k
views
News: Advanced Sequencing Technologies & Bioinformatics Analysis Course at CSHL: November 3 - 15, 2020
course sequencing workshop
updated 2 days ago by 39k • written 3.4 years ago by 20k
2
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0
replies
1.1k
views
News: Introduction to genome-wide association studies (GWAS)
Unix GWAS R
updated 2 days ago by 39k • written 3.4 years ago by ★ 2.3k
4
votes
2
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1.1k
views
News: Hands-On Workshop: How to use bisulfite-treated sequencing to study DNA methylation (BS-Seq, Bisulfite-Seq, WGBS)
Workshop methylation bisulfite
updated 3 days ago by 39k • written 3.7 years ago by ▴ 970
3
votes
0
replies
1.1k
views
News: Nextflow Training Course
Pipeline Workflow NEXTFLOW
updated 3 days ago by 39k • written 3.7 years ago by ★ 2.3k
3
votes
1
reply
1.1k
views
News: UniProt: Change of FT and CC section in UniProtKB text format
uniprot protein
updated 6 days ago by 39k • written 3.7 years ago by ★ 2.2k
0
votes
0
replies
1.0k
views
News: EMBL Course: Quantitative Proteomics: Strategies and Tools to Probe Biology
Data-analysis Proteomics
updated 3 days ago by 39k • written 3.6 years ago by • 0
0
votes
0
replies
995
views
News: 9th Programming for Evolutionary Biology Course - March 2-18 2020 in Berlin, Germany
NGS evolution workshop
updated 6 days ago by 39k • written 3.7 years ago by 9.9k
1
vote
0
replies
986
views
News: Course: GENOME ASSEMBLY USING OXFORD NANOPORE SEQUENCING
Assembly Nanopore
updated 6 days ago by 39k • written 3.7 years ago by ★ 2.3k
0
votes
1
reply
983
views
News: Course 16S Metabarcoding in Berlin (March 2020)
R Qiime2 Metabarcoding
updated 3 days ago by 39k • written 3.7 years ago by ★ 2.3k
6
votes
4
replies
982
views
News: Course online - Comparative Genomics
assembly genome next-gen alignment
updated 14 minutes ago by 39k • written 3.1 years ago by ★ 2.3k
4
votes
1
reply
978
views
News: Bioinformatics Workflows with Nextflow
Netflow reproducibility Workflows
updated 2 days ago by 39k • written 3.5 years ago by ★ 2.3k
1
vote
3
replies
934
views
News: 4th Berlin Summer School in NGS Data Analysis - October 5-9, 2020
NGS RNA-Seq DNA-Seq
updated 1 day ago by 39k • written 3.3 years ago by 9.9k
0
votes
0
replies
934
views
News: Physalia courses in February 2020 (Berlin)
assembly R SNP sequencing
updated 2 days ago by 39k • written 3.5 years ago by ★ 2.3k
0
votes
1
reply
912
views
News: Google Summer of Code 2020 announced for mentor organisations
internship GSoC
updated 3 days ago by 39k • written 3.5 years ago by 23k
0
votes
0
replies
910
views
News: scRNA-seq data analysis course in Berlin
scRNAseq R RNA-Seq RNA
updated 3 days ago by 39k • written 3.6 years ago by ★ 2.3k
0
votes
0
replies
891
views
News: Discovering the world of the Long-read nanopore Sequencing
assembly Pacbio nanopore sequencing
updated 3 days ago by 39k • written 3.5 years ago by ★ 2.3k
2
votes
0
replies
876
views
News: precisionFDA and Georgetown-ICBI are launching the Brain Cancer Predictive Modeling and Biomarker Discovery Challenge!
brain-tumor artificial-intelligence biomarkers
updated 3 days ago by 39k • written 3.6 years ago by ▴ 150
0
votes
0
replies
856
views
News: Course - Proteomics Using R/Bioconductor in Berlin
R Proteomics Bioconductor
updated 2 days ago by 39k • written 3.4 years ago by ★ 2.3k
7
votes
0
replies
851
views
News: New layout for NCBI BLAST FTP database site starting February 4, 2020
ftp blast blast_index blast-plus
updated 2 days ago by 39k • written 3.4 years ago by 130k
2
votes
0
replies
844
views
News: Long-read nanopore Sequencing course
software-error Long-reads assembly nanopore Pacbio
updated 3 days ago by 39k • written 3.4 years ago by ★ 2.3k
0
votes
0
replies
838
views
News: R Package design and development and reproducible data science for biologists - FREE ACCOMMODATION
R
updated 6 days ago by 39k • written 3.8 years ago by ▴ 110
0
votes
4
replies
826
views
News: Pan-Structural Variation hackathon in the Cloud!
SV sequencing
updated 2 days ago by 39k • written 3.3 years ago by 9.6k
6
votes
0
replies
809
views
News: CWL user support moving to https://cwl.discourse.group/; many thanks to Biostars for over 4 years of support!
cwl thanks
updated 3 days ago by 39k • written 3.6 years ago by ★ 1.9k
0
votes
0
replies
790
views
News: NGS Data Analysis Training for Researchers - March 25-27 in Munich
NGS data-analysis training workshop
updated 2 days ago by 39k • written 3.4 years ago by 9.9k
2
votes
0
replies
788
views
News: R/Bioconductor for Mass Spectrometry and Proteomics course in Berlin
R Proteomics Bioconductor
updated 6 days ago by 39k • written 3.8 years ago by ★ 2.3k
1
vote
0
replies
775
views
News: Submit to ACM COMPASS 2020 -- Now with a Global Health Track - Deadline extended to March 8th!!
global-health public-health
updated 1 day ago by 39k • written 3.3 years ago by 18k
0
votes
0
replies
767
views
News: EMBO Practical Course: Measuring Translational Dynamics by Ribosome Profiling
Ribosome-profiling Gene-expression
updated 3 days ago by 39k • written 3.6 years ago by • 0
2
votes
0
replies
760
views
News: Course - Landscape Genomics. Berlin
Genomics R
updated 3 days ago by 39k • written 3.7 years ago by ★ 2.3k
0
votes
0
replies
757
views
News: Programming with Bash and Python
Unix Bash Programming Python
updated 6 days ago by 39k • written 3.8 years ago by ★ 2.3k
1
vote
1
reply
755
views
News: Webinar on Extensive Assessment of Gene Fusion Detection, Prioritization, Annotation and Characterization on 11 March 2020
detection webinar RNA-Seq gene-fusion
updated 1 day ago by 39k • written 3.3 years ago by ▴ 40
0
votes
0
replies
753
views
News: UniProt: Functional annotation of different gene products in UniProtKB/Swiss-Prot
uniprot protein xml
updated 6 days ago by 39k • written 3.7 years ago by ★ 2.2k
0
votes
0
replies
748
views
News: Training in Bioinformatics for Beginners @NIH
omics biomedical
updated 6 days ago by 39k • written 3.8 years ago by ▴ 130
0
votes
0
replies
734
views
News: New Courses @ Edinburgh Genomics
alignment GATK R RNA-Seq Python
updated 1 day ago by 39k • written 3.3 years ago by ▴ 40
1
vote
0
replies
732
views
News: hackseqRNA: Computational RNA hackathon, Vancouver BC
hackathon RNA
updated 1 day ago by 39k • written 3.3 years ago by ▴ 50
1
vote
0
replies
731
views
News: 7th International Conference on Artificial Intelligence and Applications (AIAPP 2020)
robot artificial-intelligence machine-learning
updated 3 days ago by 39k • written 3.6 years ago by ▴ 10
1
vote
0
replies
725
views
News: Training in Metagenomics Data Analysis @ NIH,February 10-13,2020
Metagenomics Biomedical next-gen Data-analysis
updated 2 days ago by 39k • written 3.4 years ago by ▴ 130
0
votes
0
replies
717
views
News: Nextflow training course in Berlin
Pipeline Nextflow
updated 2 days ago by 39k • written 3.4 years ago by ★ 2.3k
0
votes
0
replies
715
views
News: Online Live TScourse: Python Machine Learning in Biology (July 20th-24th, 2020)
online-course Python Machine-learning
updated 2 hours ago by 39k • written 3.1 years ago by • 0
1
vote
0
replies
708
views
News: UniProt: Changes to Proteomes
uniprot proteome
updated 6 days ago by 39k • written 3.7 years ago by ★ 2.2k
142 results • Page 1 of 3
Recent Votes
Answer: Visualizing Graph Alignment Format via minigraph
Comment: Why does Ensembl VEP provide HGVSg for some variants and not others?
The .vcf format: is there a file format better suited for the era of pangenomics, and what would it be like?
ChatGPT optimized for bioinformatics questions
Trying to use hmmer to search genes over metagenome assembled genomes
Trying to use hmmer to search genes over metagenome assembled genomes
Comment: Why does Ensembl VEP provide HGVSg for some variants and not others?
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Recent Replies
Comment: BED files by Pierre Lindenbaum 155k
have a look at options `-wa` and `-wb`
Comment: BED files by lela2314 • 0
That is what I am doing but it does not seem to be working. I am doing: bedtools intersect -a enhancer_muscle2.bed -b chip_tfbs.bed > over…
Comment: The .vcf format: is there a file format better suited for the era of pangenomics by Pierre Lindenbaum 155k
shameless LLM : https://ai.tinybio.cloud/chat > The statement "VCF is the ideal file format for genomic information; no better file format…
Comment: BED files by Pierre Lindenbaum 155k
> I have been trying to solve what did you try ? (... and your answer will contain `bedtools intersect`)
Comment: The .vcf format: is there a file format better suited for the era of pangenomics by Vincent Laufer ★ 3.0k
@ram - this was as bit of a dirty tactic on my part: I stated it in the extreme to provoke disagreement. I agree with you - the irony is, d…
Comment: The .vcf format: is there a file format better suited for the era of pangenomics by Ram 39k
> .vcf is the ideal file format for genomic information; no better file format can be conceived whether in the era of singular linear refer…
Comment: GISTIC from ASCAT by Ram 39k
You can use pastebin or GitHub gist to paste more lines, maybe you're being restricted because you're a new user. Did GISTIC give you somet…
Comment: Why does Ensembl VEP provide HGVSg for some variants and not others? by Jeremy Leipzig 21k
you're right it's an off-by-one-error on my part. thanks
Comment: A question about the raw RNA-seq processing workflow by swbarnes2 13k
are files a,b and c all from the same sample? Or are you trying to align three different samples all together?
Comment: multiqc: group samples by population + boxplot ? by GenoMax 130k
Tagging: https://www.biostars.org/u/14100/ Rest of this line is required by biostars code.
Comment: Why does Ensembl VEP provide HGVSg for some variants and not others? by Vincent Laufer ★ 3.0k
@genomax thank you for clarifying that - end of an era!
Comment: Why does Ensembl VEP provide HGVSg for some variants and not others? by GenoMax 130k
FYI: Emily no longer works for/at Ensembl. That is the reason she has taken out `_ensembl` from her profile. https://www.biostars.org/u/23…
Comment: GISTIC from ASCAT by Hyper_Odin ▴ 280
Sorry, this is how much I could paste, there is an error in the website while pasting more lines
Comment: GISTIC from ASCAT by Hyper_Odin ▴ 280
Hi Ram, there you go Sample Chromosome Start Position End Position Seg.CN metastasis_H021-ARNHGQ0.47_6.segments_final.tx…
Comment: Why does Ensembl VEP provide HGVSg for some variants and not others? by Vincent Laufer ★ 3.0k
copy that. also granted your background i expected nothing less :-)
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