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News: MAY 10 DEADLINE: Apply to Penn State’s Grad Certificate in Applied Bioinformatics – 100% ONLINE
online-bioinformatics learn-bioinformatics
updated 8 months ago by 37k • written 7.8 years ago by ▴ 10
3
votes
0
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1.9k
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News: Big Data in Healthcare Symposium, Luxembourg, 28/29 October 2015
big-data conference medicine health
updated 4 months ago by 37k • written 7.4 years ago by ▴ 130
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1
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1.9k
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News: Call for Book Chapter- Essentials of Bioinformatics Vol. I-III (Springer)
medicine sequencing agriculture
updated 7 weeks ago by 37k • written 5.3 years ago by • 0
1
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0
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1.8k
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News: Computational Biology student/post doc In the UK or EU? Come to our Bioinformatics Student Symposium!
student sequencing genome symposium
updated 4 months ago by 37k • written 7.4 years ago by ▴ 10
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0
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News: Managing and Exploring Next Generation Sequencing Data course at EMBL-EBI, UK
CRAM sequence next-gen-sequencing Assembly
updated 11 months ago by 37k • written 8.4 years ago by • 0
0
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2
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News: NVIDIA GPU Conference sponsorship for Biostars + updated advertising terms
biostars meta
updated 9 months ago by 37k • written 8.0 years ago by 96k
2
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0
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1.8k
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News: Workshop on Computational and Data Challenges in Genomic Sequencing
sequencing genome
updated 4 months ago by 37k • written 7.3 years ago by ▴ 20
2
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0
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1.8k
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News: NCI Up for a Challenge (U4C) in Breast Cancer Epidemiology
cancer-epidemiology
updated 5 weeks ago by 37k • written 7.6 years ago by 26k
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0
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News: Call for abstracts: Computational Toxicology symposium at 2015 ACS national meeting, Boston
AOP cheminformatics toxicogenomics
updated 8 months ago by 37k • written 7.9 years ago by ▴ 640
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News: Importance of Sequencing in Characterizing Patterns of Ebola Transmission and Mutation
genome-sequencing Ebola
updated 12 months ago by 37k • written 8.2 years ago by ▴ 640
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6
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News: No more hidden solutions in bioinformatics
precision-medicine genome-sequencing
updated 9 days ago by 37k • written 7.7 years ago by ★ 1.2k
0
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4
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1.7k
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News: What NGS courses would you like us to prepare for 2016? (one week left)
NGS Survey Workshop
updated 5 months ago by 37k • written 7.1 years ago by 9.8k
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0
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News: New MOOC: Algorithms for DNA Sequencing
alignment Assembly genomics mooc
updated 3 months ago by 37k • written 7.5 years ago by ▴ 80
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1
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1.7k
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News: Contest: Antibody Marathon Match Problem: ABCSpeedup
contest News
updated 10 months ago by 37k • written 8.1 years ago by 152k
8
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0
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1.7k
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News: Please help! IGB grant and survey
igb ChIP-Seq RNA-Seq genome
updated 9 months ago by 37k • written 7.9 years ago by ★ 2.3k
4
votes
3
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1.7k
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News: Proteomics and Genomics Submit your Research Journals
Research Genomics Journals Proteomics
updated 8 weeks ago by 37k • written 7.6 years ago by • 0
2
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2
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1.7k
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News: BioC 2015, Bioconductor Annual Conference, July 20-22, Seattle, WA
Bioconductor Conference
updated 6 months ago by 37k • written 7.8 years ago by ★ 1.6k
3
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4
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1.7k
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News: OmicCircos was updated
R OmicCircos
updated 8 months ago by 37k • written 7.9 years ago by ▴ 50
5
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0
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1.7k
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News: The future of the postdoc
sequencing Postdoc
updated 7 months ago by 37k • written 7.8 years ago by ★ 1.2k
0
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0
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1.6k
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News: Informatics and Statistics on Metabolomics Workshop
workshop
updated 6 months ago by 37k • written 7.0 years ago by ▴ 30
0
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0
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1.6k
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News: Live webinar on Integrated Analysis using Metadata Framework and Correlation Analysis
proteomics genomics metabolomics transcriptomics
updated 8 months ago by 37k • written 7.9 years ago by ▴ 70
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0
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1.6k
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News: 8th National Symposium cum Workshop on Recent Trends in Structural Bioinformatics and Computer Aided Drug Design [SBCADD 2016]
SNP alignment sequence genome
updated 5 months ago by 37k • written 7.2 years ago by • 0
4
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1
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News: NCBI BLAST URL domain changes to take effect December 1, 2014
blast ncbi
updated 11 months ago by 37k • written 8.2 years ago by ★ 2.2k
1
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0
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News: Announcement: Workshop GATK Best Practices for Variant Discovery, 20-21 April 2015, Edinburgh, UK
SNP next-gen
updated 9 months ago by 37k • written 8.0 years ago by ★ 3.7k
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News: Festival of Genomics, San Mateo 2015
dna genome event next-gen-sequencing
updated 3 months ago by 37k • written 7.5 years ago by • 0
8
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4
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News: supporting vg users on biostars
vg graph vgteam genome News variation
updated 6 weeks ago by 4.4k • written 3.4 years ago by ★ 2.3k
3
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0
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News: Human Genome Project: Twenty-five years of big biology
Human-Genome-Project
updated 4 months ago by 37k • written 7.3 years ago by 7.0k
0
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0
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News: Live Webinar on Streamlining large scale analysis using the Strand NGS Pipeline Manager on 24 Feb 2016.
RNA-Seq DNA-seq strand-ngs ChIP-Seq
updated 6 months ago by 37k • written 7.0 years ago by ▴ 70
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News: ecSeq's RNA-Seq Experts - Prof. Dr. Ivo Hofacker
RNA-Seq NGS
updated 5 months ago by 37k • written 7.2 years ago by 9.8k
2
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0
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News: The Mozilla Fellowship for Science - Deadline Aug 14, 2015
open-science open-data
updated 3 months ago by 37k • written 7.5 years ago by 4.9k
1
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4
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1.4k
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News: Bioconductor Development Visualization
bioconductor
updated 6 months ago by 37k • written 7.8 years ago by 26k
6
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0
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1.4k
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News: BOSC 2015 slides and videos
BOSC BOSC2015
updated 3 months ago by 37k • written 7.5 years ago by ★ 2.2k
3
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0
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1.4k
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News: Restructuring the 1000 Genomes FTP site
sequencing SNP alignment
updated 4 months ago by 37k • written 7.4 years ago by ★ 1.8k
6
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13
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1.3k
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News: Ensembl reduced functionality: 10th March-16th April 2020
Ensembl VEP BLAT service News
4 months ago by Ben_Ensembl ★ 2.1k
3
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0
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News: Large scale cancer RNA-Seq study (more than 5k samples were analyzed in this study)
RNA-Seq cancer
updated 7 months ago by 37k • written 7.8 years ago by 9.8k
0
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0
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1.3k
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News: Need help with your NGS data analysis?
experts NGS consulting
updated 4 months ago by 37k • written 7.4 years ago by 9.8k
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0
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1.2k
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News: News: Bioinformatics workshop in Glasgow Summer 2018
glasgow workshop summer-school
updated 7 weeks ago by 37k • written 4.6 years ago by ▴ 40
0
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0
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1.2k
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News: Request for Application - bioCADDIE Pilot Project on Harvester for DDI Schema
data-discovery harvester
updated 3 months ago by 37k • written 7.4 years ago by • 0
5
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1
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1.2k
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News: Bioinformatics Contest 2017
Contest
updated 7 weeks ago by 37k • written 6.1 years ago by 7.0k
0
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0
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1.2k
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News: EMBO Practical Course: Microbial Metagenomics
Genomic-technologies
updated 7 weeks ago by 37k • written 3.3 years ago by • 0
1
vote
1
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1.2k
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News: Genomic Medicine Meeting VIII: NHGRI's Genomic Medicine Portfolio; livestream June 8-9
precision-medicine
updated 25 days ago by 37k • written 7.6 years ago by 11k
0
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0
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1.2k
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News: Knowledge-Driven NGS Solutions
Epigenetics NGS DNA-Seq Data-Analysis RNA-Seq
updated 12 weeks ago by 37k • written 7.5 years ago by 9.8k
2
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0
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1.0k
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News: Biotech Weekly - First issue is out! - Weekly curated news about all things biotech
biotech
updated 7 weeks ago by 37k • written 7.6 years ago by ▴ 30
8
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1
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975
views
News: Clustered `nr` database is now available for web blast @NCBI
nr blast
updated 11 months ago by ★ 22k • written 12 months ago by 125k
0
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3
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940
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News: Less Than One Month Remaining until the Submission Deadline for Phase 1 of the NCTR Indel Calling from Oncopanel Sequencing Data Challenge!
oncopanel indel-calling
updated 6 weeks ago by 37k • written 7 months ago by ▴ 10
0
votes
2
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866
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News: :: FINAL CALL :: Next-Generation Sequencing Data Analysis: A Practical Introduction (December 12-14, 2022 in Munich, Germany)
rnaseq dnaseq sequencing ngs workshop
10 weeks ago by David Langenberger 9.8k
0
votes
0
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845
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News: Pre-Register for the NCTR Indel Calling from Oncopanel Sequencing Data Challenge with FDA’s National Center for Toxicological Research (NCTR) and pre…
oncopanel indel-calling
updated 6 weeks ago by 37k • written 9 months ago by ▴ 10
0
votes
0
replies
789
views
News: Training in Metagenomics Data Analysis @ NIH
next-gen Metagenomics training
updated 7 weeks ago by 37k • written 3.4 years ago by ▴ 130
0
votes
1
reply
763
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News: ::FINAL CALL:: Online Course | A Practical Introduction to NGS Data Analysis | March 30 - April 1, 2022
DNA-Seq RNA-Seq Workshop
10 months ago by David Langenberger 9.8k
0
votes
0
replies
760
views
News: New tag for messages related with www.mygoblet.org
goblet
updated 7 months ago by 37k • written 7.8 years ago by • 0
235 results • Page 2 of 5
Recent Votes
A: from .BAM to .BAI using samtools
Comment: bgzip error 4
Answer: Gene Set Enrichment Analysis, pathway, metabolism
Answer: Gene Set Enrichment Analysis, pathway, metabolism
Answer: Gene Set Enrichment Analysis, pathway, metabolism
Answer: Gene Set Enrichment Analysis, pathway, metabolism
Answer: Gene Set Enrichment Analysis, pathway, metabolism
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Popular Question to tianshenbio ▴ 160
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Recent Replies
Answer: trainGlimmerHMM Error while training a genome by congliu37 • 0
Hello, I got the same error using ~20,000 genes for training and it was solved by reducing training gene set. I assume GlimmerHMM was no…
Comment: How to Calulate Allele Frequency from a VCF File? by Jeremy Leipzig 21k
That's correct. You don't have biallelic alleles in mitochondria, so you can use either the Allele depth (AD) or depth of coverage (DP) for…
Comment: How to calculate tumor mutation burden (TMB)? by Fabio Marroni ★ 2.9k
I just published a [post][1] on my blog, in which I include a simple R function for computing TMB. Try to see if that helps. I followed the…
Comment: Gene Set Enrichment Analysis, pathway, metabolism by Rob ▴ 160
Thank you FrankStarling, ATpoint, jv, these were so helpful.
Comment: translate CDS to prot formatted with nt nubers by Pierre Lindenbaum 152k
> with nucleotide numbers and DNA/prot aligned line by line what does it mean ? Create a Minimal, Reproducible Example to enable others t…
Comment: How to translate CDS to an amino acid sequence by vvasta • 0
I tried several of the online DNA translation tools but have not found one that would output DNA/prot alignment with nucleotide number w…
Comment: How possible deadlocks are there while migrating from MYISAM to InnoDb? by Pierre Lindenbaum 152k
but you already knew it. https://www.biostars.org/p/9551097/#9551098
Comment: How possible deadlocks are there while migrating from MYISAM to InnoDb? by Pierre Lindenbaum 152k
your question is not related to bioinformatics. Ask stackoverflow.com.
Comment: Statistical test for checking cis regulation? by Fabio Marroni ★ 2.9k
Hi lumos. It is not very clear to me what kind of information are you using for the test and how are you measuring cis-regulation. Are you …
Comment: Error 134 while aligning using hisat2 by Fabio Marroni ★ 2.9k
Other instances of the same error were indeed related to disk [space][1]. Can you post the output of the command: `df -h /bams/`? Another p…
Comment: **Error: unable to open file or unable to determine types for file** by Pierre Lindenbaum 152k
``` Please ensure that your file is TAB delimited (e.g., cat -t FILE). - Also ensure that your file has integer chromosome coordinates in t…
Comment: bgzip error 4 by Pierre Lindenbaum 152k
I/O error. Where are you writing , which filesytem ? do you have enough space ? what is the output of gzip < chr1.vcf.gz > chr1.vcf.gz…
Comment: Error: unable to open file or unable to determine types for file bed file by Neel ▴ 10
**Error: unable to open file or unable to determine types for file** Hi i am trying to run this commands **bedtools intersect -a Ec_k1…
Answer: Anti-miRNA oligonuclotide identification by Asan Emirsale • 0
You should find complementary sequences to make the miRNA silent. Should it be the Biopython or another tool. The solution might be as simp…
Comment: counting reads in a fastq file using a refrence fasta file by vaslanzadeh ▴ 10
Thanks, this works but it is extremely slow, is there any other alternatives?
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