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1,000 results • Page
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2
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2.8k
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News:
WORKSHOP - Introduction to Python for biologists
next-gen
python
SNP
RNA-Seq
updated 11 months ago by
Ram
43k • written 7.1 years ago by
oliverhooker
▴ 110
0
votes
0
replies
2.8k
views
News:
course: Advanced R Programming. Berlin
R
updated 10 months ago by
Ram
43k • written 6.2 years ago by
carlopecoraro2
★ 2.4k
0
votes
3
replies
2.8k
views
News:
Physalia-courses: 16S rRNA gene Metabarcoding Workshop
RNA-seq
sequencing
SNP
gene
sequence
updated 11 months ago by
Ram
43k • written 7.4 years ago by
carlopecoraro2
★ 2.4k
4
votes
2
replies
2.8k
views
News:
New ebook: From cell line to Command line to learn computational biology
unix
snakemake
computational-biology
RNA-seq
4 months ago by
Ming Tommy Tang
★ 3.9k
4
votes
5
replies
2.8k
views
News:
Kover will provide support via Biostars
kmer
kover
machine-learning
updated 11 months ago by
Ram
43k • written 7.8 years ago by
Alexandre Drouin
▴ 90
0
votes
0
replies
2.8k
views
News:
Workshops in Bioinformatics in 2019
assembly
R
RNA-Seq
Python
updated 10 months ago by
Ram
43k • written 5.2 years ago by
carlopecoraro2
★ 2.4k
1
vote
0
replies
2.7k
views
News:
Genomic Data Visualization and Interpretation Workshop
Bioconductor
ggplot
GenVisR
RNA-Seq
R
updated 10 months ago by
Ram
43k • written 6.7 years ago by
carlopecoraro2
★ 2.4k
13
votes
8
replies
2.7k
views
News:
NCBI is going to eliminate GI identifiers
ncbi
GI
updated 11 months ago by
Ram
43k • written 8.0 years ago by
Anima Mundi
★ 2.9k
2
votes
2
replies
2.6k
views
News:
Interview Dealing with RADseq data: some tips from our instructors
NGS
RADseq
updated 10 months ago by
Ram
43k • written 6.5 years ago by
carlopecoraro2
★ 2.4k
3
votes
6
replies
2.6k
views
News:
Brief Getting Started with Broad Firecloud tutorial posted
RNA-Seq
updated 11 months ago by
Ram
43k • written 7.8 years ago by
Sean Davis
26k
6
votes
2
replies
2.6k
views
News:
RNA-Seq Data Analysis Workshop in Berlin, Germany (full)
NGS
RNA-Seq
workshop
updated 11 months ago by
Ram
43k • written 7.3 years ago by
David Langenberger
11k
13
votes
9
replies
2.6k
views
7 follow
News:
Inviting NEW Biostars moderators to join Biostars slack channel
slack
moderator
5 months ago by
GenoMax
140k
0
votes
5
replies
2.6k
views
News:
Workshop: Data manipulation and visualization with Python
next-gen
genome
SNP
sequence
updated 11 months ago by
Ram
43k • written 7.4 years ago by
carlopecoraro2
★ 2.4k
2
votes
1
reply
2.6k
views
News:
RNAseq data analysis with R/ Bioconductor - ONLINE COURSE
R
RNA-Seq
Bioconductor
updated 9 months ago by
Ram
43k • written 4.0 years ago by
carlopecoraro2
★ 2.4k
0
votes
2
replies
2.6k
views
News:
PART FUNDED SCHOLARSHIPS - Coding, data management, and Shiny applications using RStudio for evolutionary biologists and ecologists - May 2017
Rstudio
R
Shiny
updated 10 months ago by
Ram
43k • written 7.0 years ago by
oliverhooker
▴ 110
2
votes
0
replies
2.6k
views
News:
Summer School in Bioinformatics & NGS Data Analysis
NGS
summer-school
ChIP-seq
RNA-seq
DNA-seq
updated 11 months ago by
Ram
43k • written 7.8 years ago by
Leszek
4.2k
7
votes
5
replies
2.5k
views
News:
Physalia-Course: Introduction to Linux and workflows for biologists (Berlin)
next-gen
Unix
Assembly
alignment
updated 10 months ago by
Ram
43k • written 7.0 years ago by
carlopecoraro2
★ 2.4k
1
vote
0
replies
2.5k
views
News:
Course: Gene set enrichment and pathway analysis in R . Berlin 12-16 March 2018
Pathway-Analysis
R
Gene
updated 10 months ago by
Ram
43k • written 6.4 years ago by
carlopecoraro2
★ 2.4k
3
votes
0
replies
2.5k
views
News:
Workshop: GATK Best Practices for Variant Discovery, Edinburgh, 17-19 July 2017
GATK
workshop
variant-calling
updated 10 months ago by
Ram
43k • written 7.0 years ago by
Bert Overduin
★ 3.7k
6
votes
2
replies
2.5k
views
News:
Interested in de novo transcriptome assembly using Trinity? Check out our interview to Brian Haas
alignment
RNA-Seq
updated 11 months ago by
Ram
43k • written 7.1 years ago by
carlopecoraro2
★ 2.4k
0
votes
0
replies
2.5k
views
News:
Thinking of learning Linux/Python?
genome
snp
next-gen-sequencing
updated 11 months ago by
Ram
43k • written 7.5 years ago by
carlopecoraro2
★ 2.4k
1
vote
0
replies
2.5k
views
News:
Genetic data analysis/exploration using R
RNA-Seq
snp
R
data-analysis
updated 10 months ago by
Ram
43k • written 7.0 years ago by
oliverhooker
▴ 110
12
votes
3
replies
2.4k
views
News:
Google Summer of Code and Open Bioinformatics Foundation is looking for students
GSoC
open-source
updated 11 months ago by
Ram
43k • written 8.0 years ago by
Philipp Bayer
8.3k
2
votes
0
replies
2.4k
views
News:
Course: Applied Statistics and Bioinformatics with R and Bioconductor. (Berlin, 22-26 January 2018)
Statistics
R
BioCounductor
updated 10 months ago by
Ram
43k • written 6.5 years ago by
c.pecoraro3486
▴ 20
19
votes
4
replies
2.4k
views
News:
How to analyze NGS data: An overview of nine different IT solutions
NGS
RNA-Seq
DNA-Seq
updated 11 months ago by
Ram
43k • written 7.4 years ago by
David Langenberger
11k
9
votes
4
replies
2.4k
views
7 follow
News:
fastp 0.22 released, with new FASTQ deduplication feature.
fastp
updated 8 months ago by
Ram
43k • written 2.6 years ago by
chen
★ 2.5k
0
votes
0
replies
2.4k
views
News:
WORKSHOP - Landscape genetic data analysis using R
genome
R
RNA-Seq
updated 10 months ago by
Ram
43k • written 7.0 years ago by
oliverhooker
▴ 110
6
votes
3
replies
2.4k
views
News:
Become a Professional Biinformatician in NGS, Microarray in very fair price. Register for ArrayGen training program as soon as possible to get good a…
ChIP-Seq
next-gen
RNA-Seq
updated 11 months ago by
Ram
43k • written 7.2 years ago by
Seema
• 0
0
votes
0
replies
2.4k
views
News:
Intro to Python for Biologists
next-gen
RNA-Seq
SNP
updated 10 months ago by
Ram
43k • written 6.4 years ago by
oliverhooker
▴ 110
14
votes
1
reply
2.4k
views
News:
The Gene Ontology Handbook (open access)
training
handbook
GO
updated 11 months ago by
Ram
43k • written 7.3 years ago by
Christophe Dessimoz
▴ 740
0
votes
1
reply
2.4k
views
News:
Hands-on training in Bioinformatics and Biomedical Data Science
NGS
training
updated 10 months ago by
Ram
43k • written 5.5 years ago by
sahil
▴ 10
2
votes
0
replies
2.4k
views
News:
Bioinformatics Specialization on Coursera is On Demand
Assembly
education
alignment
sequencing
RNA-Seq
updated 11 months ago by
Ram
43k • written 7.9 years ago by
phcompeau
▴ 50
1
vote
2
replies
2.3k
views
News:
Workshop: Metagenomics, Metatranscriptomics, and multi'omics for microbial community studies (9-13 April 2018 in Berlin)
Metatranscriptomics
Metagenomics
updated 10 months ago by
Ram
43k • written 6.1 years ago by
carlopecoraro2
★ 2.4k
3
votes
4
replies
2.3k
views
News:
Training in Metagenomics Data Analysis @NIH, USA, Nov 14 - 17, 2017
metagenomics
microbiome
training
updated 11 months ago by
Ram
43k • written 7.5 years ago by
AABI
▴ 130
0
votes
3
replies
2.3k
views
News:
Eukaryotic Metabarcoding workshop
next-gen
blast
alignment
updated 11 months ago by
Ram
43k • written 7.3 years ago by
carlopecoraro2
★ 2.4k
8
votes
2
replies
2.3k
views
News:
The bioinformatics chat is a new podcast about bioinformatics. In the first episode we discuss Scallop, a transcriptome assembler
podcast
Assembly
RNA-Seq
updated 10 months ago by
Ram
43k • written 7.0 years ago by
roma
▴ 120
0
votes
1
reply
2.3k
views
News:
Webinar on Unique Molecular Identifier (UMI)-powered Ultra-sensitive Variant Calling using Strand NGS - Case Study
Strand-NGS
NGS
RNA-Seq
UMI
dna-seq
updated 10 months ago by
Ram
43k • written 6.4 years ago by
Genomics
▴ 70
2
votes
0
replies
2.3k
views
News:
Course on "Genomic data visualisation and manipulation using Python"
genome
next-gen
RNA-Seq
updated 10 months ago by
Ram
43k • written 6.6 years ago by
oliverhooker
▴ 60
1
vote
0
replies
2.3k
views
News:
Multivariate analysis of ecological communities in R with the VEGAN package (VGNR01)
R
updated 10 months ago by
Ram
43k • written 6.0 years ago by
oliverhooker
▴ 60
0
votes
0
replies
2.3k
views
News:
Want to learn more about data visualization with Python? Read our interview to Dr. Martin Jones.
genome
next-gen-sequencing
updated 11 months ago by
Ram
43k • written 7.2 years ago by
carlopecoraro2
★ 2.4k
3
votes
1
reply
2.3k
views
News:
NCBI : New API Keys for the E-utilities
pubmed
eutils
ncbi
api
updated 10 months ago by
Ram
43k • written 6.4 years ago by
Pierre Lindenbaum
160k
0
votes
0
replies
2.3k
views
News:
Fully funded PhD studentships in Quantitative Biology, Universite de Lausanne, Lausanne, Switzerland
snp
R
genome
RNA-Seq
updated 10 months ago by
Ram
43k • written 5.4 years ago by
cara
• 0
1
vote
0
replies
2.3k
views
News:
The power and promise of Genome-Wide Association Studies
Meta-analysis
NGS
GWAS
Linux
R
updated 10 months ago by
Ram
43k • written 6.7 years ago by
carlopecoraro2
★ 2.4k
6
votes
0
replies
2.3k
views
News:
Bioinformatics internships with Google Summer of Code 2019
intern
Ensembl
GSOC
updated 10 months ago by
Ram
43k • written 5.1 years ago by
Emily
23k
0
votes
0
replies
2.3k
views
News:
Genomics Summer School- 6 weeks NGS Data Analysis Program
Data-Analysis
Exome
DNA-Seq
RNA-Seq
updated 10 months ago by
Ram
43k • written 7.0 years ago by
piyushkumartiwari
• 0
2
votes
0
replies
2.2k
views
News:
Advanced Transcriptomics (RNASeq) Analysis @ NIH, USA, October 31-November 3, 2017
ngs
next-gen
RNA-Seq
training
updated 11 months ago by
Ram
43k • written 7.5 years ago by
AABI
▴ 130
0
votes
0
replies
2.2k
views
News:
Workshop on Machine Learning for Transcriptomics Data
next-gen
RNA-Seq
updated 10 months ago by
Ram
43k • written 5.9 years ago by
elia.brodsky
▴ 340
3
votes
5
replies
2.2k
views
News:
Published: GeneSCF: a real-time based functional enrichment tool with support for multiple organisms
kegg
gene-enrichment
cancer
gene-ontology
updated 11 months ago by
Ram
43k • written 7.5 years ago by
EagleEye
7.5k
3
votes
5
replies
2.2k
views
News:
(18 August - "Enzyme Stability Prediction") A free webinar on on-going CAFA5 (Critical Assessment of Functional Annotation of proteins) challenge
gene-ontology
CAFA
protein
7 months ago by
Alexander
▴ 200
5
votes
0
replies
2.2k
views
News:
[UPDATED] Hands-On NGS Data Analysis Workshops 2019
NGS
Bisulfite-Seq
RNA-Seq
DNA-Seq
updated 10 months ago by
Ram
43k • written 5.3 years ago by
David Langenberger
11k
1,000 results • Page
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Recent Votes
Answer: log2(TPM+1)
Comment: Error in openning FastQC
Comment: F*up Night style events for Bioinformatics ? Comment if you're interested!
Answer: F*up Night style events for Bioinformatics ? Comment if you're interested!
Answer: F*up Night style events for Bioinformatics ? Comment if you're interested!
Comment: F*up Night style events for Bioinformatics ? Comment if you're interested!
Comment: F*up Night style events for Bioinformatics ? Comment if you're interested!
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Recent Replies
Comment: Is it reasonable to discard reads that show variation of quality across its leng
by
GenoMax
140k
This is going to be tough to diagnose. Are you going to align to a reference? If so go ahead with the alignments to see if alignments turn …
Comment: Is it reasonable to discard reads that show variation of quality across its leng
by
BRENO
• 0
Thank you for replying. I have separated the reads with at least one N on them and they account for 0.2% of the total reads in the file (8'…
Comment: Error running local blastn in R using system2
by
Mensur Dlakic
★ 26k
The `-db data/nt_euk` switch means that in your current directory you have a subdirectory called `data`, and all the `nt_euk` files are in …
Comment: Low number of both surviving reads after trimming
by
Jay
• 0
Thank you for your opinion. I will try with lower LEADING and TRAILING bases. By the way, I tried to set `keepBothReads:true` through sear…
Comment: Error in openning FastQC
by
GenoMax
140k
At this point it would be beneficial to learn some of the basics of command line. Please use this UNIX tutorial since you seem to be new to…
Comment: vcf file: number of samples does not match number of columns
by
Pierre Lindenbaum
160k
> ore or have any suggestions for fixing it? it's a problem with your upstream process. You'd better fix it.
Comment: Error in openning FastQC
by
friszd
• 0
after running fastqc -o output.html input.fastq, terminal returns: " Specified output directory 'output.html' does not exist " , when i run…
Comment: Is it reasonable to discard reads that show variation of quality across its leng
by
GenoMax
140k
The question you should be looking into is why the Q scores are dropping there? Are there `N` calls indicating some issue with that cycle?
Comment: Error in openning FastQC
by
GenoMax
140k
What is `ctrl+c ctrl+v`? You may actually be killing the running fastqc process. If you run `fastqc` interactively (like what was shown ab…
Comment: F*up Night style events for Bioinformatics ? Comment if you're interested!
by
Dave Carlson
★ 1.7k
Ugh. I've definitely done this one before as well. And was none too happy about it.
Comment: Error in openning FastQC
by
friszd
• 0
fastqc -o output.html input.fastq ctrl+c ctrl+v
Comment: Error running local blastn in R using system2
by
GenoMax
140k
What do you see if you `cat nt_euk.nal`? Do the number of pieces mentioned in that file match with what you locally have?
Comment: Low number of both surviving reads after trimming
by
GenoMax
140k
It is your data and if you want to do that it is up to you. You may be throwing away essentially good data (you should remove the nextera s…
Comment: F*up Night style events for Bioinformatics ? Comment if you're interested!
by
Istvan Albert
100k
Some things never change ... the most common mistake is still the one on top there
Comment: Low number of both surviving reads after trimming
by
Ram
43k
I see that the code content was not added again, just the formatting modified. The output is still mangled. Compare it to the output you se…
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