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News: Training in Bioinformatics for Beginners @ NIH, USA, Sep 11-14,2018
training beginners
updated 11 months ago by 43k • written 5.7 years ago by ▴ 140
1
vote
0
replies
1.9k
views
News: Trinity RNAseq Workshop in Berlin
next-gen RNA-Seq Assembly
updated 11 months ago by 43k • written 6.5 years ago by ★ 2.5k
0
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2
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1.9k
views
News: Webinar: Multi-omics: Challenges, opportunities and application to biomarker discovery
biomarker next-gen-sequencing multiomics cancer
updated 11 months ago by 43k • written 6.8 years ago by ▴ 750
0
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0
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1.9k
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News: Workshop: Advanced Python for biologists
genome Assembly sequence
updated 11 months ago by 43k • written 7.1 years ago by ★ 2.5k
7
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8
replies
1.9k
views
News: A new Stack Exchange site for Research Computing
unix linux
updated 11 months ago by 43k • written 6.4 years ago by ▴ 690
0
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0
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1.9k
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News: Metabarcoding: Transforming the way in which biodiversity can be surveyed
next-gen-sequencing blast
updated 11 months ago by 43k • written 6.3 years ago by ★ 2.5k
4
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4
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1.8k
views
News: 12th International Conference on Advancements in Bioinformatics and Drug Discovery
genome Computational-Biology
updated 11 months ago by 43k • written 6.0 years ago by ▴ 20
4
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1
reply
1.8k
views
News: scRNA-seq data analysis Workshop in Berlin
RNA-Seq next-gen
updated 10 months ago by 43k • written 5.4 years ago by ★ 2.5k
0
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0
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1.8k
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News: Physalia-courses: R courses in Berlin (Germany)
Dataviz NGS Statistics R
updated 11 months ago by 43k • written 6.9 years ago by ★ 2.5k
0
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0
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News: Phylogenetic comparative methods for studying diversification and phenotypic evolution (PCME01)
R
updated 11 months ago by 43k • written 5.5 years ago by ▴ 60
4
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1
reply
1.8k
views
News: Bioinformatics Contest 2018
contest
updated 11 months ago by 43k • written 6.3 years ago by ▴ 40
1
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0
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1.8k
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News: Advanced Python for biologists (APYB02)
genome next-gen RNA-Seq
updated 11 months ago by 43k • written 6.2 years ago by ▴ 110
3
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0
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1.8k
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News: New web BLAST default parameters and search limits are now in place at NCBI
www-blast blast ncbi
updated 10 months ago by 43k • written 3.8 years ago by 141k
0
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0
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1.8k
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News: WORK SHOP Eukaryotic metabarcoding
blast next-gen gene rna-seq
updated 11 months ago by 43k • written 6.9 years ago by ▴ 110
0
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0
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1.8k
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News: Canadian Bioinformatics 2018 Workshop Series
R RNA-Seq SNP Assembly
updated 11 months ago by 43k • written 6.3 years ago by ▴ 30
1
vote
2
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1.8k
views
News: Course: Applied Statistics and Bioinformatics with R and Bioconductor
Statistics R Metagenomics Bioconductor
updated 11 months ago by 43k • written 6.8 years ago by ★ 2.5k
0
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0
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1.8k
views
News: 2 Python courses in Berlin
next-gen python
updated 11 months ago by 43k • written 6.8 years ago by ★ 2.5k
0
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0
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1.8k
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News: April 17th - Bioinformatics Workshop for Clinicians and Biologists at the University of Nebraska Medical Center
next-gen RNA-Seq
updated 11 months ago by 43k • written 6.0 years ago by ▴ 340
11
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11
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1.8k
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8 follow
News: Python Data Visualization Course. Last 3 spots left
next-gen
updated 10 months ago by 43k • written 5.4 years ago by ★ 2.5k
0
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0
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1.8k
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News: Bioinformatic Analysis of Next Generation Sequencing Data @NIH,USA February 6-9, 2018
analysis next-gen seq-data
updated 11 months ago by 43k • written 6.5 years ago by ▴ 140
0
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0
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1.8k
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News: WORKSHOP **Metagenomics, metatranscriptomics, and multi'omics for microbial community studies **
Metagenomics sequencing metatranscriptomics
updated 11 months ago by 43k • written 6.2 years ago by ★ 2.5k
1
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0
replies
1.8k
views
News: Data Visualization with Python
next-gen Python
updated 11 months ago by 43k • written 5.8 years ago by ★ 2.5k
0
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0
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1.8k
views
News: Course: Metabarcoding of microbial communities. Berlin, 16-20 April 2018
Microbial-Communities Metabarcoding
updated 11 months ago by 43k • written 6.3 years ago by ★ 2.5k
2
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7
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1.8k
views
News: Beyond pest control: What can we learn from parasites?
docking heme parasitism in-silico
updated 10 months ago by 43k • written 5.1 years ago by 54k
1
vote
0
replies
1.8k
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News: Workshop: Introduction to Python for biologists
genome next-gen gene
updated 11 months ago by 43k • written 7.1 years ago by ★ 2.5k
5
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0
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1.8k
views
News: Bioinformatics Contest 2019
bioinforussia bioinfcontest bioinfcontest2019
updated 10 months ago by 43k • written 5.4 years ago by ▴ 50
0
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0
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1.8k
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News: Course: Introduction to Bioinformatics using Linux. Berlin, 12-16 March 2018
next-gen alignment Assembly
updated 11 months ago by 43k • written 6.3 years ago by ★ 2.5k
0
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1
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1.8k
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News: Spatio-temporal Transcriptome of LncRNAs in Human Brain
Parkinson lncRNA Alzheimer brain transcriptome
updated 11 months ago by 43k • written 6.7 years ago by ▴ 860
0
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2
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1.8k
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News: Exponential growth of data in biomedicine needs a skilled and experienced workforce
R biotech gene RNA-Seq
updated 11 months ago by 43k • written 6.8 years ago by ▴ 70
10
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4
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News: 3rd Berlin Summer School in NGS Data Analysis (2 seats just became available)
NGS RNA-Seq DNA-Seq
updated 10 months ago by 43k • written 5.3 years ago by 11k
1
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0
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1.7k
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News: Quantitative geographic ecology using R: modelling genomes, niches, and communities (QGER01)
R
updated 11 months ago by 43k • written 6.1 years ago by ▴ 60
1
vote
1
reply
1.7k
views
News: Bioinformatics for Beginners @NIH, (Bethesda, MD, USA) Feb 13 - 16, 2018
beginners training
updated 11 months ago by 43k • written 6.5 years ago by ▴ 140
1
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0
replies
1.7k
views
News: 2018 Summer School for Computational Genomics
RNA-Seq computational-genomics
updated 11 months ago by 43k • written 6.3 years ago by ▴ 10
0
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0
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1.7k
views
News: Workshop on Next Generation Sequencing Data Analysis
next-gen RNA-Seq alignment
updated 11 months ago by 43k • written 6.7 years ago by • 0
0
votes
0
replies
1.7k
views
News: Metagenomics Workshop in October 2017 in Frankfurt, Germany
NGS workshop metagenomics
updated 11 months ago by 43k • written 6.8 years ago by 11k
1
vote
2
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1.7k
views
News: Workshop: Data analysis in high throughput biology. deadline today (2 places left)
next-gen R RNA-Seq
updated 11 months ago by 43k • written 7.0 years ago by ★ 2.5k
2
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1
reply
1.7k
views
News: Meet Dr. Giovanni Marco Dall'Olio
NGS training RNA-Seq
updated 10 months ago by 43k • written 5.1 years ago by 11k
0
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0
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1.7k
views
News: Workshop: Practical GWAS using Linux and R (23-27 October 2017, Berlin)
GWAS Linux R
updated 11 months ago by 43k • written 6.6 years ago by ★ 2.5k
0
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0
replies
1.7k
views
News: Webinar: How one researcher analyze piRNAs from 7,000 TCGA samples
Cancer RNA-Seq piRNAs Small-RNA Webinar
updated 11 months ago by 43k • written 7.1 years ago by ▴ 30
2
votes
0
replies
1.7k
views
News: Call for Abstracts: BOSC 2019: Bioinformatics Open Source Conference
BOSC Conference Open-Source
updated 10 months ago by 43k • written 5.1 years ago by ★ 2.2k
1
vote
1
reply
1.7k
views
News: 2nd Berlin Summer School in NGS Data Analysis 2018
DNA-Seq Workshop NGS RNA-Seq
updated 11 months ago by 43k • written 6.1 years ago by 11k
1
vote
2
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1.7k
views
News: Webinar: Generating interpretable maps of single cell chromatin accessibility and RNA-seq datasets with Similarity Weighted Nonnegative Embedding
scRNAseq webinar rna-seq single-cell
updated 10 months ago by 43k • written 5.0 years ago by ▴ 580
2
votes
0
replies
1.7k
views
News: Introduction to bioinformatics for DNA and RNA sequence analysis (IBDR01) - last few places
RNA-Seq next-gen workshop
updated 11 months ago by 43k • written 5.7 years ago by ▴ 60
1
vote
2
replies
1.7k
views
News: NCBI Datasets - try it out!
Assembly refseq genome ncbi
updated 10 months ago by 43k • written 4.1 years ago by ★ 3.7k
0
votes
0
replies
1.7k
views
News: Introduction to Python for biologists (Berlin). 2-6 October 2017 in Berlin (Germany).Deadlline
Python NGS sequencing blast
updated 11 months ago by 43k • written 6.7 years ago by ★ 2.5k
2
votes
7
replies
1.7k
views
News: Bioinformatics workshop or training courses
RNA-Seq next-gen ChIP-Seq
updated 11 months ago by 43k • written 5.7 years ago by ▴ 140
2
votes
0
replies
1.7k
views
News: Course - Metabolomics - Berlin, 25-29 November 2019
Metabolomics R Bioconductor
updated 10 months ago by 43k • written 4.8 years ago by ★ 2.5k
0
votes
0
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1.7k
views
News: Integrative Genomic Viewer (IGV) works with Amazon S3
amazon igv
updated 10 months ago by 43k • written 5.2 years ago by ▴ 620
0
votes
2
replies
1.7k
views
News: 2 Days Hands on Workshop on Transcriptome-Seq Data Analysis
RNA-Seq sequencing SNP Assembly
updated 11 months ago by 43k • written 6.9 years ago by • 0
0
votes
0
replies
1.7k
views
News: Webinar: ChIP-Seq / ATAC-Seq Analysis and Integration with Gene Expression Data
webinar RNA-Seq ChIP-Seq
updated 11 months ago by 43k • written 5.6 years ago by ▴ 30
895 results • Page 3 of 18
Recent Votes
Answer: Duplicate marking, read names, and the SRA
Comment: Installing/switching between versions of R/Rstudio/Bioconductor
Comment: Installing/switching between versions of R/Rstudio/Bioconductor
Comment: Installing/switching between versions of R/Rstudio/Bioconductor
Answer: Cellranger count error: Input FASTQ file ended prematurely
Comment: Load a full GFF3 into annotation track using arrow (Apollo)
Answer: ClusterProfiler enrichKEGG – remove organism name in plots?
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Recent Replies
Comment: Duplicate marking, read names, and the SRA by Luka • 0
>Curios if there a reference for this? [Apparently it's not deprecated yet][1], but will be soon and the SRA intends for it to be at some …
Comment: Installing/switching between versions of R/Rstudio/Bioconductor on personal mach by Ram 43k
I prefer RStudio for new projects as well. The moment I need versions though, RStudio becomes a burden. I wish one could launch RStudio fro…
Comment: what's the genomic location and name of gene responsible for orange and black pa by GenoMax 141k
According to ChatGPT: The gene responsible for the orange and black patches of fur in calico cats (and tortoiseshell cats) is the X-linked …
Comment: Installing/switching between versions of R/Rstudio/Bioconductor on personal mach by BioinfGuru ★ 1.7k
Certainly true. Switching versions is way simpler that way, at the cost of the familiarity of the Rstudio IDE - especially if the code is w…
Comment: Duplicate marking, read names, and the SRA by GenoMax 141k
> fastq-dump is deprecated Curios if there a reference for this? `fasterq-dump` seems to allow for parallel streams but `fastq-dump` is st…
Comment: Duplicate marking, read names, and the SRA by Luka • 0
>In many cases those remain recoverable using the -F option when you dump the data (cloud download not required) The -F option (or any equ…
Answer: Duplicate marking, read names, and the SRA by GenoMax 141k
To be specific, not every dataset in SRA loses the original identifiers. In many cases those remain recoverable using the `-F` option when …
Comment: Installing/switching between versions of R/Rstudio/Bioconductor on personal mach by Ram 43k
To use different versions of R and bioconductor, you don't really need RStudio. One can simply create new conda environments with the requi…
Comment: Installing/switching between versions of R/Rstudio/Bioconductor on personal mach by BioinfGuru ★ 1.7k
Done. Thank you.
Comment: Installing/switching between versions of R/Rstudio/Bioconductor by GenoMax 141k
Perhaps add the word linux/ubuntu to the title? You have noted that the instructions are for Ubuntu in text.
Comment: Installing/switching between versions of R/Rstudio/Bioconductor by BioinfGuru ★ 1.7k
Thanks @Ram I'll add that to the intro. I'm the admin on my machine so I haven't found it necessary to install any other way. I'll try a fr…
Comment: Downloading the raw microarray data from GEO by GenoMax 141k
No GPR files with this data unless you ask the submitters for them directly. You can find the matrix of data here: https://ftp.ncbi.nlm.nih…
Comment: Cellranger count error: Input FASTQ file ended prematurely by GenoMax 141k
That is odd. Thanks for following-up and providing an explanation.
Answer: Cellranger count error: Input FASTQ file ended prematurely by bp22 ▴ 70
Dear all, The reason for the error was due to the index (I1) fastq files, for example `SI-GA-A1_1_S1_L001_I1_001.fastq.gz` having a lo…
Comment: Installing/switching between versions of R/Rstudio/Bioconductor by Ram 43k
Your tutorial required `sudo` and thus is not doable for a majority of people. Any alternative to `sudo snap`?
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