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News: PART FUNDED SCHOLARSHIPS - Coding, data management, and Shiny applications using RStudio for evolutionary biologists and ecologists - May 2017
Rstudio R Shiny
updated 4 months ago by 40k • written 6.5 years ago by ▴ 110
0
votes
5
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News: Workshop: Data manipulation and visualization with Python
next-gen genome SNP sequence
updated 5 months ago by 40k • written 6.9 years ago by ★ 2.4k
1
vote
1
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2.4k
views
News: R package PopGenome: http://popgenome.weebly.com/
R population-genomics popgenome VCF
updated 6 months ago by 40k • written 8.4 years ago by ▴ 50
15
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4
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News: Call For Nominations: 2013 Benjamin Franklin Award
benjamin-franklin-award award
updated 7 months ago by 40k • written 10.6 years ago by 157k
6
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1
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News: FastQC Version 0.11.1 released
genome next-gen-sequencing
updated 6 months ago by 40k • written 9.3 years ago by ★ 2.2k
3
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0
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News: Workshop: GATK Best Practices for Variant Discovery, Edinburgh, 17-19 July 2017
GATK workshop variant-calling
updated 4 months ago by 40k • written 6.5 years ago by ★ 3.7k
6
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2
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News: Interested in de novo transcriptome assembly using Trinity? Check out our interview to Brian Haas
alignment RNA-Seq
updated 5 months ago by 40k • written 6.6 years ago by ★ 2.4k
3
votes
1
reply
2.4k
views
News: Variathon V0.1 - 2013 - Comparing Existing Or New Pipelines For Variant Calling In Terms Of Accuracy And Efficiency
ngs conference
updated 7 months ago by 40k • written 10.6 years ago by 157k
1
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0
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News: Genetic data analysis/exploration using R
RNA-Seq snp R data-analysis
updated 4 months ago by 40k • written 6.6 years ago by ▴ 110
7
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5
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News: Physalia-Course: Introduction to Linux and workflows for biologists (Berlin)
next-gen Unix Assembly alignment
updated 4 months ago by 40k • written 6.5 years ago by ★ 2.4k
0
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0
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News: Total RNA Commercial Kit Comparison Study
microarray NGS RNA-Seq qPCR
updated 6 months ago by 40k • written 8.9 years ago by ▴ 40
2
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0
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News: Course: Applied Statistics and Bioinformatics with R and Bioconductor. (Berlin, 22-26 January 2018)
Statistics R BioCounductor
updated 4 months ago by 40k • written 6.0 years ago by ▴ 20
3
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0
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News: Samtools/htslib/bcftools 1.1 released
htslib samtools
updated 6 months ago by 40k • written 9.0 years ago by 103k
0
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0
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2.3k
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News: Intro to Python for Biologists
next-gen RNA-Seq SNP
updated 4 months ago by 40k • written 5.9 years ago by ▴ 110
0
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0
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2.3k
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News: WORKSHOP - Landscape genetic data analysis using R
genome R RNA-Seq
updated 4 months ago by 40k • written 6.5 years ago by ▴ 110
2
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0
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News: The NAR annual Web Server Issue is here..
web-servers
updated 6 months ago by 40k • written 8.3 years ago by ★ 5.1k
2
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0
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News: Bioinformatics Specialization on Coursera is On Demand
Assembly education alignment sequencing RNA-Seq
updated 5 months ago by 40k • written 7.4 years ago by ▴ 50
4
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0
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2.3k
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News: 2nd UK Bioinformatics Student Symposium on 7 Oct '15 at TGAC, Norwich
symposium
updated 11 months ago by 40k • written 8.1 years ago by ▴ 100
0
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1
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2.3k
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News: Hands-on training in Bioinformatics and Biomedical Data Science
NGS training
updated 4 months ago by 40k • written 5.0 years ago by ▴ 10
12
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3
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News: Google Summer of Code and Open Bioinformatics Foundation is looking for students
GSoC open-source
updated 5 months ago by 40k • written 7.5 years ago by 7.9k
4
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0
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2.3k
views
News: Upcoming Workshop: Ensembl Perl APIs
ensembl APIs Perl workshops
updated 6 months ago by 40k • written 8.9 years ago by ★ 5.2k
6
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3
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News: Become a Professional Biinformatician in NGS, Microarray in very fair price. Register for ArrayGen training program as soon as possible to get good a…
ChIP-Seq next-gen RNA-Seq
updated 5 months ago by 40k • written 6.7 years ago by • 0
4
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0
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views
News: Google Genomics and Broad Institute Team Up to Tackle Genomic Data
google broad gatk
updated 9 months ago by 40k • written 8.3 years ago by ★ 5.2k
1
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0
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News: APPLICATION DEADLINE IS DECEMBER 5 for Penn State Applied Bioinformatics Program – 100% Online
education courses online
updated 6 months ago by 40k • written 8.9 years ago by ▴ 10
0
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1
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2.2k
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News: Nature Index: Novogene is teaming up with laboratories worldwide for life sciences and human health research
NGS Nature Sequencing
updated 9 months ago by 40k • written 18 months ago by ▴ 360
2
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0
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News: Course on "Genomic data visualisation and manipulation using Python"
genome next-gen RNA-Seq
updated 4 months ago by 40k • written 6.1 years ago by ▴ 60
14
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1
reply
2.2k
views
News: The Gene Ontology Handbook (open access)
training handbook GO
updated 5 months ago by 40k • written 6.8 years ago by ▴ 740
0
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0
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News: Want to learn more about data visualization with Python? Read our interview to Dr. Martin Jones.
genome next-gen-sequencing
updated 5 months ago by 40k • written 6.7 years ago by ★ 2.4k
0
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1
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News: Webinar on Unique Molecular Identifier (UMI)-powered Ultra-sensitive Variant Calling using Strand NGS - Case Study
Strand-NGS NGS RNA-Seq UMI dna-seq
updated 4 months ago by 40k • written 5.9 years ago by ▴ 70
0
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0
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News: Coursera Bioinformatics Specialization will start in August 31 2015
Coursera
updated 11 months ago by 40k • written 8.1 years ago by ★ 2.2k
1
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2
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2.2k
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News: Workshop: Metagenomics, Metatranscriptomics, and multi'omics for microbial community studies (9-13 April 2018 in Berlin)
Metatranscriptomics Metagenomics
updated 4 months ago by 40k • written 5.6 years ago by ★ 2.4k
0
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0
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News: Fully funded PhD studentships in Quantitative Biology, Universite de Lausanne, Lausanne, Switzerland
snp R genome RNA-Seq
updated 4 months ago by 40k • written 5.0 years ago by • 0
0
votes
3
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2.2k
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News: Eukaryotic Metabarcoding workshop
next-gen blast alignment
updated 5 months ago by 40k • written 6.8 years ago by ★ 2.4k
19
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4
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2.2k
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News: How to analyze NGS data: An overview of nine different IT solutions
NGS RNA-Seq DNA-Seq
updated 5 months ago by 40k • written 6.9 years ago by 10k
1
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0
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2.2k
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News: Multivariate analysis of ecological communities in R with the VEGAN package (VGNR01)
R
updated 4 months ago by 40k • written 5.5 years ago by ▴ 60
0
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0
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2.2k
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News: Genomics Summer School- 6 weeks NGS Data Analysis Program
Data-Analysis Exome DNA-Seq RNA-Seq
updated 4 months ago by 40k • written 6.5 years ago by • 0
0
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0
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2.2k
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News: Second Annual International Environmental Omics conference to be held in Liverpool, UK. September 15th-18th
Conference
updated 6 months ago by 40k • written 9.2 years ago by ★ 3.9k
2
votes
0
replies
2.2k
views
News: Advanced Transcriptomics (RNASeq) Analysis @ NIH, USA, October 31-November 3, 2017
ngs next-gen RNA-Seq training
updated 5 months ago by 40k • written 7.0 years ago by ▴ 130
3
votes
3
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2.2k
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News: Innocentive Challenge: Identify Organisms From A Stream Of Dna Sequences And Get $1,000,000
ngs
updated 7 months ago by 40k • written 10.4 years ago by ▴ 830
8
votes
2
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2.2k
views
News: The bioinformatics chat is a new podcast about bioinformatics. In the first episode we discuss Scallop, a transcriptome assembler
podcast Assembly RNA-Seq
updated 4 months ago by 40k • written 6.5 years ago by ▴ 120
3
votes
4
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2.2k
views
News: Training in Metagenomics Data Analysis @NIH, USA, Nov 14 - 17, 2017
metagenomics microbiome training
updated 5 months ago by 40k • written 7.0 years ago by ▴ 130
3
votes
0
replies
2.2k
views
News: 2013 Gmod Community Survey
gff3 galaxy biomart
updated 7 months ago by 40k • written 10.7 years ago by ▴ 280
0
votes
0
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2.2k
views
News: Workshop on Machine Learning for Transcriptomics Data
next-gen RNA-Seq
updated 4 months ago by 40k • written 5.4 years ago by ▴ 340
6
votes
0
replies
2.2k
views
News: Bioinformatics internships with Google Summer of Code 2019
intern Ensembl GSOC
updated 4 months ago by 40k • written 4.6 years ago by 23k
10
votes
7
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2.2k
views
News: Free draft copy of book on bioinformatics tools
alignment Assembly RNA-seq next-gen
updated 8 months ago by 40k • written 8.4 years ago by ★ 1.1k
0
votes
0
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2.2k
views
News: Bioinformatics, Statistics and R for Next Generation Sequencing Data Analysis
next-gen-sequencing
updated 4 months ago by 40k • written 5.9 years ago by ▴ 170
5
votes
0
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2.2k
views
News: [UPDATED] Hands-On NGS Data Analysis Workshops 2019
NGS Bisulfite-Seq RNA-Seq DNA-Seq
updated 4 months ago by 40k • written 4.8 years ago by 10k
13
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9
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2.2k
views
News: Inviting NEW Biostars moderators to join Biostars slack channel
slack moderator
updated 4 months ago by 40k • written 5.3 years ago by 134k
0
votes
0
replies
2.1k
views
News: Conference Announcement - Camda 2014
conference
updated 7 months ago by 40k • written 9.6 years ago by ▴ 240
0
votes
0
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2.1k
views
News: Eukaryotic metabarcoding Workshop. February 26th-March 2nd, 2018 in Berlin
USEARCH Obitools Metabarcoding
updated 4 months ago by 40k • written 5.9 years ago by ★ 2.4k
1,000 results • Page 4 of 20
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Answer: TPM RNA-seq data for differential expression analysis
A: Error When Installing Emboss
Answer: Subclustering of intergated cells from scRNA-seq data
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Comment: Subclustering of intergated cells from scRNA-seq data by fifty_fifty ▴ 60
thank you. This is exactly what I was looking for
Answer: Search RCSB with a list of protein names? by Mensur Dlakic ★ 25k
This is not the most elegant solution, but it should work with previous suggestions. In this remote directory: http://ftp.wwpdb.org/p…
Answer: Automate the Splitting of a VCF File by Sample (bcftools) by Ram 40k
The manual says you can split samples out at once using the `+split` plugin. So, `bcftools +split -Oz -o <PATH> file.vcf.gz` should do the …
Comment: differences between trajectories in conditions with Monocle3 or other tools by Amitm ★ 2.2k
Phate (or Monocle) doesn't do UMAP. If you have done UMAP already (using seurat) then you could use the cell barcode to UMAP cluster label …
Comment: Error: cannot open file 2 for reading From Cufflinks Version 2.2.1 When Attempti by Y • 0
I figured out how to make it work. The bams have to be comma separated not just by space: cd "${input_directory_with_associated_bam_fi…
Comment: Search RCSB with a list of protein names? by Joseph • 0
Hey, this is so close to what I'm looking for - I clarified in my edit. This is a great way to batch download lots of PDBs in RCSB by their…
Comment: Search RCSB with a list of protein names? by Joseph • 0
This is a really neat package, but I don't think it does exactly what I want, so I've clarified my question. This seems like it grabs a PD…
Comment: How to get the gft file to run velocyto for velocity analysis? by Chris ▴ 200
Yes, thank you! I figured it out but I got an error: velocyto run10x -m Hg38_rmsk.gtf WT/outs /cellranger/reference/refdata-cellranger…
Comment: How to get the gft file to run velocyto for velocity analysis? by bk11 ★ 1.3k
You can get from here- [UCSC][1]. Just click on get output botton. [1]: https://genome.ucsc.edu/cgi-bin/hgTables?hgsid=611454127_NtvlaW…
Answer: Search RCSB with a list of protein names? by bk11 ★ 1.3k
You can use `Bio3D` an R Package for this. [http://thegrantlab.org/bio3d_v2/tutorials/installing-bio3d][1] [http://thegrantlab.org/b…
Comment: Search RCSB with a list of protein names? by GenoMax 134k
You can download various types of bulk data files from RCSB here: https://www.rcsb.org/docs/programmatic-access/file-download-services You…
Comment: How to perform hypothesis testing on contingency tables and compare with the nul by RK • 0
Thank you so much
Comment: How to perform hypothesis testing on contingency tables and compare with the nul by Jean-Karim Heriche 26k
So just do a regular chi-squared test as I explained above. The null hypothesis is that there are as many mutated/unmutated trinucleotides …
Comment: biomaRT doesn't report uniprot id by Ram 40k
A couple of notes: 1. It's biomaRt, not biomaRT 2. It's ensembl as in ensEMBL, not the word ensemble. I've fixed those for you but please…
Comment: QC of genetic data by bk11 ★ 1.3k
> Would the SNPs on chromosome 0 and 26 be removed from the genetic file > or left in. Yes, you can leave out chr26 and chr0. > I have s…
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