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News: FINAL CALL - Single-Cell RNA-Seq Data Analysis: A Practical Introduction (May 6-8, 2024 in Berlin)
single-cell sequencing
18 days ago by David Langenberger 11k
3
votes
2
replies
550
views
News: Announcement: Research Topic "Mechanistic, Machine Learning and Hybrid Models of the 'Other' Endocrine Regulatory Systems in Health and Disease", Vol…
mathematical-modelling endocrinology ML systems-biology machine-learning
24 days ago by Johannes W. Dietrich • 0
12
votes
2
replies
435
views
News: 8th Berlin Summer School in NGS Data Analysis (June 10-14, 2024) - already half booked
Workshop RNA-Seq DNA-Seq Illumina
13 days ago by David Langenberger 11k
0
votes
0
replies
194
views
News: Online course: Reproducibility in Bioinformatics
Singularity Version-Control Docker Containers
updated 25 days ago by 43k • written 25 days ago by ★ 2.5k
0
votes
0
replies
182
views
News: Online course: Meta-analysis in R
Meta-Analysis Statistics R
updated 4 days ago by 43k • written 4 days ago by ★ 2.5k
0
votes
0
replies
176
views
News: Online course: Meta-analysis in R
Meta-Analysis R
updated 11 days ago by 43k • written 11 days ago by ★ 2.5k
0
votes
0
replies
170
views
News: Online course: Network Analysis in R
NetworkAnalyis R
9 days ago by carlopecoraro2 ★ 2.5k
1
vote
0
replies
167
views
News: Landscape Genomics course in Switzerland
LFMM Landscape-Genomics Sambada R Local-Adaptation
updated 14 days ago by 43k • written 17 days ago by ★ 2.5k
0
votes
0
replies
167
views
News: Course - Agent-Based Modelling Using NetLogo - University of Lodz, Poland
Netlogo Individual-Based-Models Agent-Based-Models
updated 4 days ago by 43k • written 4 days ago by ★ 2.5k
0
votes
0
replies
166
views
News: Final Call - Bioinformatics Pipeline Development with Nextflow (May 27-29, 2024)
workshop RNA-seq nextflow DNA-seq
updated 6 days ago by 43k • written 6 days ago by 11k
0
votes
0
replies
159
views
News: Online course: Analysis of Prokaryotic Pangenomes (Last call)
Prokaryotic Bacterial-Genomics Pangenomics
updated 25 days ago by 43k • written 25 days ago by ★ 2.5k
0
votes
0
replies
158
views
News: Online course: Introduction to GWAS
GWAS Imputation StatisticalPower
29 days ago by carlopecoraro2 ★ 2.5k
0
votes
0
replies
141
views
News: Online course: Eukaryotic Metabarcoding
Metabarcoding Biodiversity R eDNA
21 days ago by carlopecoraro2 ★ 2.5k
0
votes
0
replies
137
views
News: Deadline Approaching: PETs for Public Health Challenge
privacy public-health-challenge
updated 7 days ago by 43k • written 7 days ago by ▴ 380
0
votes
0
replies
137
views
News: Online course: Food Traceability Using Genomic Tools
Nanopore Genomic-Tools Illumina Food-Traceability
updated 19 days ago by 43k • written 19 days ago by ★ 2.5k
1
vote
0
replies
123
views
News: Online Live Course: Introduction to Machine Learning in R
Rstats TScourses Rlang Rproject
updated 11 days ago by 43k • written 11 days ago by ▴ 70
0
votes
0
replies
120
views
News: upcoming online statistical courses
Statistics R Data-Analysis
updated 1 day ago by 43k • written 2 days ago by ★ 2.5k
2
votes
0
replies
115
views
News: Online Course Generalised Additive Mixed Models (GAMM): modelling space-time correlation structures
GAMM Rlang Rstats Rproject
updated 11 days ago by 43k • written 11 days ago by ▴ 70
2
votes
0
replies
114
views
News: Online Course Introduction to Network Analysis and Modelling
Python Network-Analysis
updated 11 days ago by 43k • written 11 days ago by ▴ 70
0
votes
0
replies
113
views
News: Online course: Multivariate Data Analysis with R and vegan
Multivariate-Statistics vegan R
updated 14 days ago by 43k • written 15 days ago by ★ 2.5k
2
votes
0
replies
111
views
News: Online course: Genome Annotation
Genome-Assembly RNA-seq Genome-Annotation
updated 13 days ago by 43k • written 13 days ago by ★ 2.5k
2
votes
0
replies
106
views
News: Course Functional Programming with R
Rstats TScourses Rproject KeepLearning Rlang
12 days ago by Transmitting Science communication ▴ 70
0
votes
0
replies
67
views
News: Online course: DNA methylation
Pacbio Nanopore DnaMethylation Evolution
1 day ago by carlopecoraro2 ★ 2.5k
23 results • Page 1 of 1
Recent Votes
Comment: Correlation for ATAC-Seq and Chip-Seq
Answer: PDB residue serial inconsistency and PDB id&UniProt ID mismatch
Answer: PDB residue serial inconsistency and PDB id&UniProt ID mismatch
Answer: PDB residue serial inconsistency and PDB id&UniProt ID mismatch
Answer: PDB residue serial inconsistency and PDB id&UniProt ID mismatch
Comment: PDB residue serial inconsistency and PDB id&UniProt ID mismatch
Answer: What is the real meaning of relative enrichment/peak height of ChIP-seq tracks?
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Recent Replies
Comment: Filter BAM to keep only alignments at an interval, ignoring reads spliced over by Pierre Lindenbaum 161k
see also : https://www.biostars.org/p/9537698/ ; https://www.biostars.org/p/9464312/ ; https://www.biostars.org/p/417123/
Comment: Filter BAM to keep only alignments at an interval, ignoring reads spliced over by Pierre Lindenbaum 161k
what's the gray section ? it's the read you want ? do you only want the reads that end at the splice event (single point location) ?
Comment: interpretartion of a vcf file by Pierre Lindenbaum 161k
yes if there is more than one sample genotyped.
Comment: interpretartion of a vcf file by samuelkalandarov2002 ▴ 10
Is it typical to observe such a profile in the context of diploid organism ?
Answer: Plots for DNA methylation data by Basti ★ 2.0k
Yes you can use ggplot2 to create your own plots from a table of results from a differential methylation analysis. You just need to adapt a…
Comment: Heatmap and rna-seq by Basti ★ 2.0k
This forum is not dedicated to this type of request, there are many online tutorials for creating heatmaps accessible with simple internet …
Answer: python file for coding potential calculator by atharvakarkare14 ▴ 10
Download the CPC2 tool supported by python 3 from here [https://github.com/gao-lab/CPC2_standalone/releases/tag/v1.0.1][1]. Then follow …
Comment: Redirection of Duplicate PMIDs by LauferVA 4.2k
let me know the scope and scale of the request (e.g. I need to do this for every record in Pubmed) and can help
Comment: Redirection of Duplicate PMIDs by LauferVA 4.2k
how is this query itself originating?
Comment: Redirection of Duplicate PMIDs by dominickd • 0
I was able to come up with a workaround using the requests library: import requests pmid = 30134295 url = 'https://pubmed.ncbi…
Comment: What is the real meaning of relative enrichment/peak height of ChIP-seq tracks? by HyperEvo • 0
Thanks for you answer! Actually I have already filtered my peak according to blacklist by bedtools. You mean it's meaningless to compare on…
Answer: Redirection of Duplicate PMIDs by GenoMax 141k
More than likely not since the database query seems to work for the redirected PMID but not the original. $ esearch -db pubmed -query …
Comment: DYH17 Structure Prediction by anasjamshed ▴ 120
Blast showed PDB: 8J07_n9(human) as best template with 62.99%. I also used swissmodel to model the protein and it showed: https://swissmod…
Comment: How to slice a gvcf file with tabix? by Pierre Lindenbaum 161k
No, in haplotypecaller
Comment: How to slice a gvcf file with tabix? by Sd • 0
Then what is the best way to do slicing for 1Mb windows? Doing `--intervals` in the GenomicsDBImport?
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