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23
votes
7
replies
4.4k
views
News: Research accounts on GitHub
github git
updated 9 months ago by 41k • written 9.6 years ago by 158k
3
votes
0
replies
4.3k
views
News: Free Online Harvardx Course, Data Analysis For Genomics, Starts April 7
methylation bioconductor ChIP-seq RNA-seq R
updated 9 months ago by 41k • written 9.7 years ago by ★ 2.2k
24
votes
7
replies
4.3k
views
News: #Bioinformatics Crowdcoding
crowd-coding
updated 9 months ago by 41k • written 10.4 years ago by 158k
2
votes
0
replies
4.3k
views
News: Workshop: Analysis of single cell RNA-seq data
R next-gen RNA-Seq alignment
updated 6 months ago by 41k • written 6.4 years ago by ★ 2.4k
1
vote
0
replies
4.2k
views
News: Hands-On Training in RNA-seq Bioinformatics: A Practical Introduction - Mapping, Visualization, Basic Analyses
next-gen RNA-Seq workshop
updated 9 months ago by 41k • written 9.5 years ago by 10k
6
votes
4
replies
4.1k
views
News: awesome-single-cell: a list of open-source single-cell analysis software and workshop materials
single-cell RNA-Seq
updated 8 months ago by 41k • written 7.4 years ago by 26k
6
votes
9
replies
4.1k
views
News: 1000 Genomes : The Initial Phase 3 variant list and phased genotypes.
1000genomes
updated 9 months ago by 41k • written 9.5 years ago by 158k
11
votes
1
reply
4.1k
views
News: GATB will provide developer support via Biostar
minia dsk gatb
updated 22 months ago by 41k • written 9.6 years ago by ★ 1.5k
7
votes
8
replies
4.0k
views
News: Next-Gen Sequencing Tutorials On Cubelp (Cranfield Bioinformatics Electronic Learning Platform)
genome chip-seq snp assembly
updated 14 months ago by 41k • written 10.3 years ago by ▴ 610
27
votes
9
replies
3.9k
views
News: OSX 10.11 released 30th Sep will be "rootless"
mac osx
updated 15 months ago by 41k • written 8.2 years ago by 13k
1
vote
0
replies
3.9k
views
News: Workshop: Bioinformatics for Beginners, University of Maryland, College Park, USA
next-gen RNA-Seq workshop assembly
updated 10 months ago by 41k • written 8.6 years ago by ▴ 20
8
votes
6
replies
3.9k
views
News: Last Call: Upcoming Workshop - Rna-Seq Bioinformatics: A Practical Introduction
RNA-seq
updated 9 months ago by 41k • written 10.9 years ago by 10k
54
votes
24
replies
3.9k
views
12 follow
News: Big news from Microsoft. BASH on windows.
windows
updated 8 months ago by 41k • written 7.7 years ago by ★ 3.2k
4
votes
0
replies
3.8k
views
News: RepurposeDB - A New Reference Database of Drug Repositioning
precision-medicine drug-repositioning
updated 7 months ago by 41k • written 6.8 years ago by 18k
8
votes
10
replies
3.8k
views
News: New versions of Minia and DSK (2.0.x)
minia dsk assembly gatb
updated 20 months ago by 41k • written 8.8 years ago by ★ 1.5k
12
votes
17
replies
3.8k
views
6 follow
News: A programming language for living cells [Cello]
dna sequence research language
updated 8 months ago by 41k • written 7.7 years ago by 11k
3
votes
3
replies
3.8k
views
News: A Tale Of Next Generation Sequencing Platforms: Ion Torrent, Pacific Biosciences And Illumina Miseq
sequencing
updated 9 months ago by 41k • written 11.3 years ago by 99k
18
votes
11
replies
3.8k
views
News: Full Genome Sequencing Service 30x whole human genome sequencing for $3,490 (project cancelled)
genome next-gen-sequencing
updated 23 months ago by 41k • written 9.2 years ago by ▴ 100
6
votes
7
replies
3.8k
views
News: New in DiffBind: dba.plotProfile() - Peak profiles and profile heatmaps
DiffBind ChIP-seq deepTools visualization ATAC-seq
15 months ago by Rory Stark ★ 2.0k
7
votes
3
replies
3.8k
views
News: Visualizing genomic data: techniques and challenges. Our interview with Dr. Malachi Griffith, Dr. Obi Griffith and Mr. Zachary Skidmore (The Griffith…
R RNA-Seq genome NGSdata
updated 7 months ago by 41k • written 6.5 years ago by ★ 2.4k
51
votes
17
replies
3.7k
views
News: Biostars 3.0 is now under testing. It has groups, charms and other interesting features.
meta biostars
updated 9 months ago by 41k • written 8.7 years ago by 99k
3
votes
2
replies
3.7k
views
News: Course/Workshop: Informatics For Rna-Sequence Analysis (June, 2013)
RNA-seq
updated 9 months ago by 41k • written 10.9 years ago by 20k
12
votes
7
replies
3.7k
views
News: Welcome Ensembl REST with more endpoints!
ensembl rest-api
updated 9 months ago by 41k • written 9.2 years ago by ★ 5.2k
17
votes
9
replies
3.7k
views
News: My Ncbi Curriculum Vitae Web Application: Sciencv
ncbi
updated 9 months ago by 41k • written 10.2 years ago by 158k
33
votes
5
replies
3.6k
views
News: FINAL CALL: Epigenetics Workshop - DNA Methylation Data Analysis (some last seats available)
Epigenetics Workshop Bisulfite-Sequencing
updated 8 months ago by 41k • written 7.5 years ago by ▴ 460
0
votes
0
replies
3.6k
views
News: Journal Of Bioinformatics Research Studies- Call For Papers
publication biology
updated 9 months ago by 41k • written 9.7 years ago by • 0
9
votes
4
replies
3.6k
views
News: Conference Announcement - Camda 2013
conference classification
updated 9 months ago by 41k • written 10.9 years ago by ▴ 240
11
votes
2
replies
3.6k
views
News: Coursera: Computational Molecular Evolution
course
updated 9 months ago by 41k • written 10.6 years ago by 158k
14
votes
3
replies
3.6k
views
News: Updated: Conference/Symposium/Seminar/Workshop alert 2018-2019
seminar symposium conference
updated 6 months ago by 41k • written 5.6 years ago by 5.8k
5
votes
2
replies
3.6k
views
News: Tuesday 10/29 Live Tour Of New Features In Integrated Genome Browser 8
genome-browser RNA-seq ChIP-seq
updated 9 months ago by 41k • written 10.1 years ago by ★ 2.4k
6
votes
1
reply
3.5k
views
News: Symposium And Rna-Seq Data Analysis Workshop Charlotte May 13-14
RNA RNA-seq training
updated 9 months ago by 41k • written 9.7 years ago by ★ 2.4k
9
votes
5
replies
3.5k
views
News: SAMTOOLS 1.4 released
samtools
updated 7 months ago by 41k • written 6.7 years ago by 158k
5
votes
1
reply
3.5k
views
News: Broad Gatk Haplotypecaller Speed Improved 2-4 X By Cooperation With Intel, And Incremental Multi-Sample Calling Made Possible!
gatk variant-calling
updated 9 months ago by 41k • written 9.7 years ago by ★ 5.2k
27
votes
7
replies
3.5k
views
News: The Biostar Swarm: A Visualization
biostars
updated 9 months ago by 41k • written 10.8 years ago by 99k
0
votes
1
reply
3.4k
views
News: Workshop: Introductory Population Genomics: From Data to Inference
next-gen SNP R
updated 8 months ago by 41k • written 7.1 years ago by ★ 2.4k
2
votes
0
replies
3.4k
views
News: Bioinformatics Open Days 2Nd Edition - 14 And 15 Of March, 2013 At The University Of Minho, Campus Gualtar, Braga, Portugal.
conference
updated 9 months ago by 41k • written 10.9 years ago by ▴ 20
2
votes
0
replies
3.3k
views
News: Synthetic DNA/RNA Spike-in standards for NGS
RNA-Seq assay spike-in
updated 8 months ago by 41k • written 7.3 years ago by 136k
1
vote
0
replies
3.3k
views
News: Command Line Bioinformatics and High-throughput Sequencing Analysis Course
training course
updated 23 months ago by 41k • written 9.3 years ago by 7.4k
0
votes
2
replies
3.3k
views
News: Course: Practical GWAS using Linux and R. 23-27 October 2017, Berlin (Germany)
GWAS Linux R
updated 6 months ago by 41k • written 6.3 years ago by ★ 2.4k
10
votes
0
replies
3.3k
views
News: 1000 Genomes data on GRCh38
1000Genomes GRCh38 alts alignment
updated 15 months ago by 41k • written 8.2 years ago by ▴ 100
5
votes
2
replies
3.3k
views
News: Summary of AGBT 2015
AGBT2015 AGBT
updated 8 months ago by 41k • written 8.8 years ago by ▴ 640
8
votes
1
reply
3.3k
views
News: LAST DAY TO REGISTER - NGS Workshop 2015: A Practical Introduction to NGS Data Analysis (Oxford, UK)
RNA-Seq workshop
updated 9 months ago by 41k • written 9.1 years ago by 10k
12
votes
8
replies
3.3k
views
News: 'Potential Rna-Dna Binding Site In Alu Repeat', Or 'Why Should I Allow Multiple Mapping Positions When Analyzing Chipseq Data?'
chipseq rna
updated 9 months ago by 41k • written 10.4 years ago by 10k
14
votes
4
replies
3.2k
views
News: FULL: NGS Data Analysis Workshop for Beginners in Munich (29 June - 1 Juli 2016)
RNA-Seq next-gen NGS
updated 17 months ago by 41k • written 7.8 years ago by 10k
11
votes
0
replies
3.2k
views
News: BWA 0.7.11 is out, supports ALT contigs
BWA
updated 9 months ago by 41k • written 9.0 years ago by 104k
14
votes
5
replies
3.2k
views
News: Science Article On Social Influence Bias On Voting Patterns ("Herding") With Impact On Biostar.
meta biostars
updated 9 months ago by 41k • written 10.3 years ago by 53k
12
votes
0
replies
3.2k
views
News: Looking For Feedback On The Json Output For Ncbi E-Utilities
ncbi eutils
updated 9 months ago by 41k • written 11.1 years ago by ▴ 360
4
votes
3
replies
3.2k
views
News: CAFE v4.0 available
phylogenetics CAFE
updated 7 months ago by 41k • written 6.7 years ago by ▴ 150
2
votes
0
replies
3.2k
views
News: Promoter Design Challenge: Design A Plant Promoter And We Will Construct It.
plant-promoter transcription-factor
updated 9 months ago by 41k • written 10.8 years ago by ▴ 20
2
votes
0
replies
3.2k
views
News: "Practical GWAS Using Linux and R" Workshop
GWAS Linux R next-gen
updated 6 months ago by 41k • written 6.4 years ago by ★ 2.4k
1,000 results • Page 2 of 20
Recent Votes
Answer: Can't install hisat2 with miniconda
Answer: Can't install hisat2 with miniconda
Answer: Can't install hisat2 with miniconda
Answer: iqtree vs raxml
Comment: which statistical test and which package for comapre datasets?
Answer: Bowtie 2 alignment
Answer: GO, KEGG, GSEA analysis with ~5 DEGs
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Answer: Tutorials for Spatial Transcriptomics by CTLong ▴ 50
Personally, when I learn a new technology, I usually play around with the data that had already been generated by previous labs and try to …
Comment: What apps can read large FASTQ files on Windows? by ATpoint 78k
Also, as I suggested already here https://bioinformatics.stackexchange.com/questions/21931/how-to-download-sequencing-data-on-windows-using…
Answer: What apps can read large FASTQ files on Windows? by size_t ▴ 120
As @Sanjukta said, you won't really learn anything new from manually looking at millions of sequences. If you insist on viewing, you c…
Comment: What apps can read large FASTQ files on Windows? by dsull ★ 5.1k
Why do you want to open up such a large file in a text editor? You're not really going to learn anything new from manually looking at milli…
Comment: Can't install hisat2 with miniconda by Ozymandeus ▴ 30
Thank you! This fixed the issue.
Comment: Is interleaved Fastq files the same as interlaced fastq by GenoMax 136k
> SPAdes wants interlaced fastq and BWA-MEM wants interleaved fastq Both programs will accept separate paired-end files. The reads in the …
Comment: which statistical test and which package for comapre datasets? by LauferVA 3.8k
@414fa591 this question is in need of clarification, as @rpolicastro has already said. However, based on what you've written, ***the resea…
Comment: Bowtie 2 alignment by Elizabeth ▴ 30
Thank you so much. I'm getting comparable results now. Appreciate the quick response.
Comment: which statistical test and which package for comapre datasets? by rpolicastro 12k
You should explain your experiment in more detail, such as the hypothesis you are testing and the samples you have to test this.
Comment: which statistical test and which package for comapre datasets? by satva72 • 0
thanks for you comment. I think its possible if we compare the different dataset?! to show that distribution is different between datasets.
Comment: How to display a VCF/BCF file or stream as a paginated table in a python web fra by Jeremy Leipzig 22k
seqr now supports Hail but with a layer of elasticsearch. It does not support TileDB but in theory it could.
Comment: which statistical test and which package for comapre datasets? by Jeremy ▴ 860
I think you will need at least three replicates to be able to do statistics.
Comment: GetPileupSummaries intervals-list with Targeted Sequencing? by Pierre Lindenbaum 158k
> Asking for bed file is not a suitable option in the current scenario. ???????
Comment: GetPileupSummaries intervals-list with Targeted Sequencing? by Manuel Sokolov Ravasqueira ▴ 100
they only provided me the sorted.bam files aligned with hg19. I converted bam into fastq and started variant calling from there. Asking for…
Comment: GetPileupSummaries intervals-list with Targeted Sequencing? by Pierre Lindenbaum 158k
> kit is proprietary I can't imagine you get a targeted sequencing without having a BED file....
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