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1,000 results • Page
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2
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2.8k
views
News:
WORKSHOP - Introduction to Python for biologists
next-gen
python
SNP
RNA-Seq
updated 11 months ago by
Ram
43k • written 7.1 years ago by
oliverhooker
▴ 110
0
votes
0
replies
2.8k
views
News:
course: Advanced R Programming. Berlin
R
updated 10 months ago by
Ram
43k • written 6.2 years ago by
carlopecoraro2
★ 2.4k
0
votes
3
replies
2.8k
views
News:
Physalia-courses: 16S rRNA gene Metabarcoding Workshop
RNA-seq
sequencing
SNP
gene
sequence
updated 11 months ago by
Ram
43k • written 7.4 years ago by
carlopecoraro2
★ 2.4k
4
votes
2
replies
2.8k
views
News:
New ebook: From cell line to Command line to learn computational biology
unix
snakemake
computational-biology
RNA-seq
4 months ago by
Ming Tommy Tang
★ 3.9k
4
votes
5
replies
2.8k
views
News:
Kover will provide support via Biostars
kmer
kover
machine-learning
updated 11 months ago by
Ram
43k • written 7.8 years ago by
Alexandre Drouin
▴ 90
0
votes
0
replies
2.8k
views
News:
Workshops in Bioinformatics in 2019
assembly
R
RNA-Seq
Python
updated 10 months ago by
Ram
43k • written 5.2 years ago by
carlopecoraro2
★ 2.4k
1
vote
0
replies
2.7k
views
News:
Genomic Data Visualization and Interpretation Workshop
Bioconductor
ggplot
GenVisR
RNA-Seq
R
updated 10 months ago by
Ram
43k • written 6.7 years ago by
carlopecoraro2
★ 2.4k
13
votes
8
replies
2.7k
views
News:
NCBI is going to eliminate GI identifiers
ncbi
GI
updated 11 months ago by
Ram
43k • written 8.0 years ago by
Anima Mundi
★ 2.9k
2
votes
2
replies
2.6k
views
News:
Interview Dealing with RADseq data: some tips from our instructors
NGS
RADseq
updated 10 months ago by
Ram
43k • written 6.4 years ago by
carlopecoraro2
★ 2.4k
3
votes
6
replies
2.6k
views
News:
Brief Getting Started with Broad Firecloud tutorial posted
RNA-Seq
updated 11 months ago by
Ram
43k • written 7.7 years ago by
Sean Davis
26k
6
votes
2
replies
2.6k
views
News:
RNA-Seq Data Analysis Workshop in Berlin, Germany (full)
NGS
RNA-Seq
workshop
updated 11 months ago by
Ram
43k • written 7.3 years ago by
David Langenberger
11k
13
votes
9
replies
2.6k
views
7 follow
News:
Inviting NEW Biostars moderators to join Biostars slack channel
slack
moderator
5 months ago by
GenoMax
140k
2
votes
1
reply
2.6k
views
News:
RNAseq data analysis with R/ Bioconductor - ONLINE COURSE
R
RNA-Seq
Bioconductor
updated 9 months ago by
Ram
43k • written 4.0 years ago by
carlopecoraro2
★ 2.4k
0
votes
5
replies
2.6k
views
News:
Workshop: Data manipulation and visualization with Python
next-gen
genome
SNP
sequence
updated 11 months ago by
Ram
43k • written 7.4 years ago by
carlopecoraro2
★ 2.4k
0
votes
2
replies
2.6k
views
News:
PART FUNDED SCHOLARSHIPS - Coding, data management, and Shiny applications using RStudio for evolutionary biologists and ecologists - May 2017
Rstudio
R
Shiny
updated 10 months ago by
Ram
43k • written 7.0 years ago by
oliverhooker
▴ 110
2
votes
0
replies
2.6k
views
News:
Summer School in Bioinformatics & NGS Data Analysis
NGS
summer-school
ChIP-seq
RNA-seq
DNA-seq
updated 11 months ago by
Ram
43k • written 7.8 years ago by
Leszek
4.2k
7
votes
5
replies
2.5k
views
News:
Physalia-Course: Introduction to Linux and workflows for biologists (Berlin)
next-gen
Unix
Assembly
alignment
updated 10 months ago by
Ram
43k • written 7.0 years ago by
carlopecoraro2
★ 2.4k
1
vote
0
replies
2.5k
views
News:
Course: Gene set enrichment and pathway analysis in R . Berlin 12-16 March 2018
Pathway-Analysis
R
Gene
updated 10 months ago by
Ram
43k • written 6.4 years ago by
carlopecoraro2
★ 2.4k
3
votes
0
replies
2.5k
views
News:
Workshop: GATK Best Practices for Variant Discovery, Edinburgh, 17-19 July 2017
GATK
workshop
variant-calling
updated 10 months ago by
Ram
43k • written 7.0 years ago by
Bert Overduin
★ 3.7k
6
votes
2
replies
2.5k
views
News:
Interested in de novo transcriptome assembly using Trinity? Check out our interview to Brian Haas
alignment
RNA-Seq
updated 11 months ago by
Ram
43k • written 7.1 years ago by
carlopecoraro2
★ 2.4k
0
votes
0
replies
2.5k
views
News:
Thinking of learning Linux/Python?
genome
snp
next-gen-sequencing
updated 11 months ago by
Ram
43k • written 7.5 years ago by
carlopecoraro2
★ 2.4k
1
vote
0
replies
2.5k
views
News:
Genetic data analysis/exploration using R
RNA-Seq
snp
R
data-analysis
updated 10 months ago by
Ram
43k • written 7.0 years ago by
oliverhooker
▴ 110
12
votes
3
replies
2.4k
views
News:
Google Summer of Code and Open Bioinformatics Foundation is looking for students
GSoC
open-source
updated 11 months ago by
Ram
43k • written 8.0 years ago by
Philipp Bayer
8.3k
2
votes
0
replies
2.4k
views
News:
Course: Applied Statistics and Bioinformatics with R and Bioconductor. (Berlin, 22-26 January 2018)
Statistics
R
BioCounductor
updated 10 months ago by
Ram
43k • written 6.5 years ago by
c.pecoraro3486
▴ 20
19
votes
4
replies
2.4k
views
News:
How to analyze NGS data: An overview of nine different IT solutions
NGS
RNA-Seq
DNA-Seq
updated 11 months ago by
Ram
43k • written 7.4 years ago by
David Langenberger
11k
9
votes
4
replies
2.4k
views
7 follow
News:
fastp 0.22 released, with new FASTQ deduplication feature.
fastp
updated 8 months ago by
Ram
43k • written 2.6 years ago by
chen
★ 2.5k
0
votes
0
replies
2.4k
views
News:
WORKSHOP - Landscape genetic data analysis using R
genome
R
RNA-Seq
updated 10 months ago by
Ram
43k • written 7.0 years ago by
oliverhooker
▴ 110
6
votes
3
replies
2.4k
views
News:
Become a Professional Biinformatician in NGS, Microarray in very fair price. Register for ArrayGen training program as soon as possible to get good a…
ChIP-Seq
next-gen
RNA-Seq
updated 11 months ago by
Ram
43k • written 7.2 years ago by
Seema
• 0
0
votes
0
replies
2.4k
views
News:
Intro to Python for Biologists
next-gen
RNA-Seq
SNP
updated 10 months ago by
Ram
43k • written 6.4 years ago by
oliverhooker
▴ 110
14
votes
1
reply
2.4k
views
News:
The Gene Ontology Handbook (open access)
training
handbook
GO
updated 11 months ago by
Ram
43k • written 7.3 years ago by
Christophe Dessimoz
▴ 740
0
votes
1
reply
2.4k
views
News:
Hands-on training in Bioinformatics and Biomedical Data Science
NGS
training
updated 10 months ago by
Ram
43k • written 5.5 years ago by
sahil
▴ 10
2
votes
0
replies
2.4k
views
News:
Bioinformatics Specialization on Coursera is On Demand
Assembly
education
alignment
sequencing
RNA-Seq
updated 11 months ago by
Ram
43k • written 7.9 years ago by
phcompeau
▴ 50
1
vote
2
replies
2.3k
views
News:
Workshop: Metagenomics, Metatranscriptomics, and multi'omics for microbial community studies (9-13 April 2018 in Berlin)
Metatranscriptomics
Metagenomics
updated 10 months ago by
Ram
43k • written 6.1 years ago by
carlopecoraro2
★ 2.4k
3
votes
4
replies
2.3k
views
News:
Training in Metagenomics Data Analysis @NIH, USA, Nov 14 - 17, 2017
metagenomics
microbiome
training
updated 11 months ago by
Ram
43k • written 7.5 years ago by
AABI
▴ 130
0
votes
3
replies
2.3k
views
News:
Eukaryotic Metabarcoding workshop
next-gen
blast
alignment
updated 11 months ago by
Ram
43k • written 7.3 years ago by
carlopecoraro2
★ 2.4k
8
votes
2
replies
2.3k
views
News:
The bioinformatics chat is a new podcast about bioinformatics. In the first episode we discuss Scallop, a transcriptome assembler
podcast
Assembly
RNA-Seq
updated 10 months ago by
Ram
43k • written 7.0 years ago by
roma
▴ 120
0
votes
1
reply
2.3k
views
News:
Webinar on Unique Molecular Identifier (UMI)-powered Ultra-sensitive Variant Calling using Strand NGS - Case Study
Strand-NGS
NGS
RNA-Seq
UMI
dna-seq
updated 10 months ago by
Ram
43k • written 6.4 years ago by
Genomics
▴ 70
2
votes
0
replies
2.3k
views
News:
Course on "Genomic data visualisation and manipulation using Python"
genome
next-gen
RNA-Seq
updated 10 months ago by
Ram
43k • written 6.6 years ago by
oliverhooker
▴ 60
1
vote
0
replies
2.3k
views
News:
Multivariate analysis of ecological communities in R with the VEGAN package (VGNR01)
R
updated 10 months ago by
Ram
43k • written 6.0 years ago by
oliverhooker
▴ 60
0
votes
0
replies
2.3k
views
News:
Want to learn more about data visualization with Python? Read our interview to Dr. Martin Jones.
genome
next-gen-sequencing
updated 11 months ago by
Ram
43k • written 7.2 years ago by
carlopecoraro2
★ 2.4k
3
votes
1
reply
2.3k
views
News:
NCBI : New API Keys for the E-utilities
pubmed
eutils
ncbi
api
updated 10 months ago by
Ram
43k • written 6.4 years ago by
Pierre Lindenbaum
160k
0
votes
0
replies
2.3k
views
News:
Fully funded PhD studentships in Quantitative Biology, Universite de Lausanne, Lausanne, Switzerland
snp
R
genome
RNA-Seq
updated 10 months ago by
Ram
43k • written 5.4 years ago by
cara
• 0
1
vote
0
replies
2.3k
views
News:
The power and promise of Genome-Wide Association Studies
Meta-analysis
NGS
GWAS
Linux
R
updated 10 months ago by
Ram
43k • written 6.7 years ago by
carlopecoraro2
★ 2.4k
6
votes
0
replies
2.3k
views
News:
Bioinformatics internships with Google Summer of Code 2019
intern
Ensembl
GSOC
updated 10 months ago by
Ram
43k • written 5.1 years ago by
Emily
23k
0
votes
0
replies
2.3k
views
News:
Genomics Summer School- 6 weeks NGS Data Analysis Program
Data-Analysis
Exome
DNA-Seq
RNA-Seq
updated 10 months ago by
Ram
43k • written 7.0 years ago by
piyushkumartiwari
• 0
2
votes
0
replies
2.2k
views
News:
Advanced Transcriptomics (RNASeq) Analysis @ NIH, USA, October 31-November 3, 2017
ngs
next-gen
RNA-Seq
training
updated 11 months ago by
Ram
43k • written 7.5 years ago by
AABI
▴ 130
0
votes
0
replies
2.2k
views
News:
Workshop on Machine Learning for Transcriptomics Data
next-gen
RNA-Seq
updated 10 months ago by
Ram
43k • written 5.9 years ago by
elia.brodsky
▴ 340
3
votes
5
replies
2.2k
views
News:
(18 August - "Enzyme Stability Prediction") A free webinar on on-going CAFA5 (Critical Assessment of Functional Annotation of proteins) challenge
gene-ontology
CAFA
protein
7 months ago by
Alexander
▴ 200
3
votes
5
replies
2.2k
views
News:
Published: GeneSCF: a real-time based functional enrichment tool with support for multiple organisms
kegg
gene-enrichment
cancer
gene-ontology
updated 11 months ago by
Ram
43k • written 7.5 years ago by
EagleEye
7.5k
5
votes
0
replies
2.2k
views
News:
[UPDATED] Hands-On NGS Data Analysis Workshops 2019
NGS
Bisulfite-Seq
RNA-Seq
DNA-Seq
updated 10 months ago by
Ram
43k • written 5.3 years ago by
David Langenberger
11k
1,000 results • Page
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Recent Votes
Comment: Hybrid assembly Pacbio- Nanopore
Answer: vg call is time consuming
Answer: FDR and Bonferroni
Answer: FDR and Bonferroni
Answer: Choosing an FC Threshold
Answer: Choosing an FC Threshold
Differential expression analysis with very high duplication rate
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Answer: calculate mismatch rate from VCF file
by
Pierre Lindenbaum
160k
> I want to calculate the mismatch rate on base-level, samtools stats in.bam | grep "error rate" | cut -f 2,3 error rate: 2.0…
Answer: Hybrid assembly Pacbio- Nanopore
by
colindaven
6.2k
If you have sufficient coverage of Pacbio HiFi reads - I think 30- 50X - then just use the Hifiasm https://github.com/chhylp123/hifiasm. It…
Answer: FindAllMarkers not working (Error (data layers are not joined. Please run JoinL
by
kayah
• 0
you should run JoinLayers() before FindAllMarkers()!!
Answer: Error occurs when migrate-n software performs "make mpis"
by
lingxue
• 0
Thank you very much. I will try to install it again according to your suggestion.
Comment: Only one read per run - Trying to use CellRangerv7
by
GenoMax
140k
https://www.ncbi.nlm.nih.gov/sra/?term=SRR16053948 Metadata indicates that this is: > Single-cell combinatorial-indexing RNA-sequencing (…
Comment: Paired layout, but one fastq file
by
GenoMax
140k
There is a BAM file available here: https://sra-pub-src-2.s3.amazonaws.com/SRR14667226/CTRL_possorted_genome_bam.bam.1 Please get that wit…
Comment: Only one read per run - Trying to use CellRangerv7
by
dsull
★ 5.6k
1. This is a comment, not an answer. Please don't post it as an answer. :) 2. This is sci-rna-seq, not 10x rna-seq. CellRanger would not …
Comment: Only one read per run - Trying to use CellRangerv7
by
Sky
▴ 10
Sorry for the delayed reply. I have included my code and the output from downloading the four files. Each dataset only resulted in one fast…
Answer: FDR and Bonferroni
by
joe
▴ 470
> Any idea why this is happening? For example, I got 1064 significant > probes from raw p-values, but only 18 from Bonferroni correction, a…
Comment: Paired layout, but one fastq file
by
Sky
▴ 10
I am also having a similar issue where there is only one fastq file but no bam file available so from my understanding I can't use bamtofas…
Comment: convert cds to seurat object
by
sooni
▴ 20
Yes, I tried with `as.Seurat`. But there is an error follwing: Error: `No data in provided assay - logcounts`. How can I solve this problem?
Comment: novel and know mir156 and mir172
by
gayachit
▴ 200
Do you have RNAseq or small RNAseq data?
Answer: Which fasta files are assembled transcripts IDBA_tran assembler ?
by
weidonglu
• 0
It should be transcript-20.fa,transcript-30.fa,transcript-40.fa,transcript-50.fa and transcript-60.fa. Then you have to merge these fasta-f…
Comment: Salmon Quantification in Alignment based-mode
by
GenoMax
140k
> /path/to//decoy.txt does not exist. Did you check to make sure the file is there? Also it is possible that by simply cutting the names a…
Comment: Why counting by diffbind and featurecounts differ?
by
Ankit
▴ 500
True in case of featurecounts and same I want to get via diffbind but it's not giving. I was trying to get the same results with diffbind.…
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