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1,000 results • Page 2 of 20
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4
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News: RepurposeDB - A New Reference Database of Drug Repositioning
precision-medicine drug-repositioning
updated 4 months ago by 40k • written 6.6 years ago by 18k
3
votes
3
replies
3.7k
views
News: A Tale Of Next Generation Sequencing Platforms: Ion Torrent, Pacific Biosciences And Illumina Miseq
sequencing
updated 7 months ago by 40k • written 11.1 years ago by 98k
7
votes
3
replies
3.7k
views
News: Visualizing genomic data: techniques and challenges. Our interview with Dr. Malachi Griffith, Dr. Obi Griffith and Mr. Zachary Skidmore (The Griffith…
R RNA-Seq genome NGSdata
updated 4 months ago by 40k • written 6.3 years ago by ★ 2.4k
54
votes
24
replies
3.7k
views
12 follow
News: Big news from Microsoft. BASH on windows.
windows
updated 5 months ago by 40k • written 7.5 years ago by ★ 3.1k
3
votes
2
replies
3.6k
views
News: Course/Workshop: Informatics For Rna-Sequence Analysis (June, 2013)
RNA-seq
updated 7 months ago by 40k • written 10.7 years ago by 20k
12
votes
17
replies
3.6k
views
6 follow
News: A programming language for living cells [Cello]
dna sequence research language
updated 5 months ago by 40k • written 7.5 years ago by 11k
0
votes
0
replies
3.6k
views
News: Journal Of Bioinformatics Research Studies- Call For Papers
publication biology
updated 6 months ago by 40k • written 9.5 years ago by • 0
12
votes
7
replies
3.6k
views
News: Welcome Ensembl REST with more endpoints!
ensembl rest-api
updated 6 months ago by 40k • written 9.0 years ago by ★ 5.2k
33
votes
5
replies
3.5k
views
News: FINAL CALL: Epigenetics Workshop - DNA Methylation Data Analysis (some last seats available)
Epigenetics Workshop Bisulfite-Sequencing
updated 5 months ago by 40k • written 7.4 years ago by ▴ 460
51
votes
17
replies
3.5k
views
News: Biostars 3.0 is now under testing. It has groups, charms and other interesting features.
meta biostars
updated 7 months ago by 40k • written 8.5 years ago by 98k
11
votes
2
replies
3.5k
views
News: Coursera: Computational Molecular Evolution
course
updated 7 months ago by 40k • written 10.4 years ago by 157k
9
votes
4
replies
3.5k
views
News: Conference Announcement - Camda 2013
conference classification
updated 7 months ago by 40k • written 10.7 years ago by ▴ 240
5
votes
2
replies
3.5k
views
News: Tuesday 10/29 Live Tour Of New Features In Integrated Genome Browser 8
genome-browser RNA-seq ChIP-seq
updated 7 months ago by 40k • written 9.9 years ago by ★ 2.4k
6
votes
1
reply
3.5k
views
News: Symposium And Rna-Seq Data Analysis Workshop Charlotte May 13-14
RNA RNA-seq training
updated 6 months ago by 40k • written 9.5 years ago by ★ 2.4k
17
votes
9
replies
3.5k
views
News: My Ncbi Curriculum Vitae Web Application: Sciencv
ncbi
updated 7 months ago by 40k • written 10.0 years ago by 157k
14
votes
3
replies
3.5k
views
News: Updated: Conference/Symposium/Seminar/Workshop alert 2018-2019
seminar symposium conference
updated 4 months ago by 40k • written 5.4 years ago by 5.8k
5
votes
1
reply
3.4k
views
News: Broad Gatk Haplotypecaller Speed Improved 2-4 X By Cooperation With Intel, And Incremental Multi-Sample Calling Made Possible!
gatk variant-calling
updated 6 months ago by 40k • written 9.5 years ago by ★ 5.2k
9
votes
5
replies
3.4k
views
News: SAMTOOLS 1.4 released
samtools
updated 4 months ago by 40k • written 6.6 years ago by 157k
2
votes
0
replies
3.4k
views
News: Bioinformatics Open Days 2Nd Edition - 14 And 15 Of March, 2013 At The University Of Minho, Campus Gualtar, Braga, Portugal.
conference
updated 7 months ago by 40k • written 10.7 years ago by ▴ 20
0
votes
1
reply
3.4k
views
News: Workshop: Introductory Population Genomics: From Data to Inference
next-gen SNP R
updated 5 months ago by 40k • written 6.9 years ago by ★ 2.4k
27
votes
7
replies
3.3k
views
News: The Biostar Swarm: A Visualization
biostars
updated 7 months ago by 40k • written 10.6 years ago by 98k
2
votes
0
replies
3.3k
views
News: Synthetic DNA/RNA Spike-in standards for NGS
RNA-Seq assay spike-in
updated 5 months ago by 40k • written 7.1 years ago by 134k
0
votes
2
replies
3.3k
views
News: Course: Practical GWAS using Linux and R. 23-27 October 2017, Berlin (Germany)
GWAS Linux R
updated 4 months ago by 40k • written 6.1 years ago by ★ 2.4k
5
votes
2
replies
3.2k
views
News: Summary of AGBT 2015
AGBT2015 AGBT
updated 6 months ago by 40k • written 8.6 years ago by ▴ 640
8
votes
1
reply
3.2k
views
News: LAST DAY TO REGISTER - NGS Workshop 2015: A Practical Introduction to NGS Data Analysis (Oxford, UK)
RNA-Seq workshop
updated 6 months ago by 40k • written 8.9 years ago by 10k
11
votes
0
replies
3.2k
views
News: BWA 0.7.11 is out, supports ALT contigs
BWA
updated 6 months ago by 40k • written 8.8 years ago by 103k
12
votes
8
replies
3.2k
views
News: 'Potential Rna-Dna Binding Site In Alu Repeat', Or 'Why Should I Allow Multiple Mapping Positions When Analyzing Chipseq Data?'
chipseq rna
updated 7 months ago by 40k • written 10.2 years ago by 10k
12
votes
0
replies
3.2k
views
News: Looking For Feedback On The Json Output For Ncbi E-Utilities
ncbi eutils
updated 7 months ago by 40k • written 10.9 years ago by ▴ 360
2
votes
0
replies
3.2k
views
News: Promoter Design Challenge: Design A Plant Promoter And We Will Construct It.
plant-promoter transcription-factor
updated 7 months ago by 40k • written 10.7 years ago by ▴ 20
14
votes
5
replies
3.2k
views
News: Science Article On Social Influence Bias On Voting Patterns ("Herding") With Impact On Biostar.
meta biostars
updated 7 months ago by 40k • written 10.1 years ago by 53k
3
votes
0
replies
3.1k
views
News: Tumorportal - A Tool For Exploring A Pan-Cancer Dataset
tcga cancer-genomics
updated 7 months ago by 40k • written 9.6 years ago by 19k
2
votes
0
replies
3.1k
views
News: "Practical GWAS Using Linux and R" Workshop
GWAS Linux R next-gen
updated 4 months ago by 40k • written 6.2 years ago by ★ 2.4k
1
vote
1
reply
3.1k
views
News: Course: STATISTICS FOR BIOLOGISTS USING R. 18-22 September (Berlin)
statistics R
updated 5 months ago by 40k • written 6.7 years ago by ★ 2.4k
4
votes
3
replies
3.1k
views
News: CAFE v4.0 available
phylogenetics CAFE
updated 4 months ago by 40k • written 6.5 years ago by ▴ 150
9
votes
3
replies
3.1k
views
News: New Human Genome Assembly (Grch38) Released
human-genome assembly
updated 7 months ago by 40k • written 9.8 years ago by 157k
0
votes
0
replies
3.1k
views
News: sRNAbench: profiling of small RNAs and its sequence variants in single or multi-species high-throughput experiments
webserver isomiRs microRNA small-RNA
updated 6 months ago by 40k • written 9.0 years ago by 10k
2
votes
0
replies
3.0k
views
News: Short Course And Workshop On Rna-Seq Analysis
RNA-seq
updated 7 months ago by 40k • written 9.7 years ago by ▴ 60
2
votes
2
replies
3.0k
views
News: Upcoming Hands-On NGS Data Analysis Workshops 2018
Mapping Workshop RNA-Seq Quality-Control DNA-Seq
updated 4 months ago by 40k • written 5.8 years ago by 10k
7
votes
1
reply
3.0k
views
News: A Multi-Split Mapping Algorithm For Circular Rna, Splicing, Trans-Splicing, And Fusion Detection
ngs mapping
updated 7 months ago by 40k • written 9.6 years ago by 10k
10
votes
1
reply
3.0k
views
News: Ucsc: Dna Sequences In Web Pages Indexed By Bing.Com / Microsoft Research (All Phenotype And Literature Tracks)
web ucsc
updated 7 months ago by 40k • written 9.7 years ago by 157k
10
votes
17
replies
3.0k
views
7 follow
News: Tell us what you think of the ENA browser?
ena
updated 5 months ago by 40k • written 6.9 years ago by ★ 1.8k
5
votes
0
replies
2.9k
views
News: Penn State now offers an Online Graduate Certificate: Applied Bioinformatics
bioinformatics-education
updated 6 months ago by 40k • written 9.1 years ago by 98k
4
votes
2
replies
2.9k
views
News: NCBI NOW (Next generation sequencing Online Workshop) October 13 - 23 , 2015
NCBI DNA-Seq NGS RNA-Seq
updated 6 months ago by 40k • written 8.0 years ago by ★ 2.2k
3
votes
2
replies
2.9k
views
News: Bioinformatics On Windows And Windows Cloud
windows cloud
updated 7 months ago by 40k • written 10.9 years ago by ▴ 20
13
votes
2
replies
2.9k
views
News: A Summary Of All Encode Related News On The Openhelix Blog: Encode Floods The News
encode
updated 7 months ago by 40k • written 11.1 years ago by 98k
0
votes
1
reply
2.9k
views
News: Workshop: 16S rRNA gene Metabarcoding (Berlin. 3-7 April 2017)
next-gen alignment blast R
updated 5 months ago by 40k • written 6.6 years ago by ★ 2.4k
3
votes
0
replies
2.9k
views
News: Introduction to Python for Biologists and Advanced Python for Biologists courses
Python
updated 8 months ago by 40k • written 8.3 years ago by ★ 3.7k
4
votes
3
replies
2.9k
views
News: -max_target_seqs 1 in NCBI standalone BLAST does not do what you think it does
blast
updated 4 months ago by 40k • written 5.0 years ago by 11k
2
votes
3
replies
2.9k
views
News: Summer Course On Analyzing Next-Generation Sequencing Data, June 10-20, Kellog Biological Station, Michigan State University
education
updated 7 months ago by 40k • written 10.7 years ago by 98k
4
votes
0
replies
2.9k
views
News: New simulation dataset for 'A benchmark for RNA-seq quantification pipelines'
RNA-Seq
updated 5 months ago by 40k • written 7.4 years ago by ★ 2.5k
1,000 results • Page 2 of 20
Recent Votes
Comment: ncbi error report log for validate fastq issue
Comment: ncbi error report log for validate fastq issue
A: Bowtie2 MAPQ difference using local vs end-to-end alignment
C: Bowtie2 MAPQ difference using local vs end-to-end alignment
Answer: TPM RNA-seq data for differential expression analysis
A: Error When Installing Emboss
Answer: Subclustering of intergated cells from scRNA-seq data
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Comment: Assessing Rockhopper's output by shelkmike ▴ 980
I used Rockhopper only for bacterial genomes assembled into circular contigs or circular scaffolds.
Comment: Unable to install HorvathMammalMethylChip40manifest packages by ATpoint 77k
There is no package of that name in CRAN or Bioconductor. Where do you have it from, so which tutorial you follow?
Comment: Subclustering of intergated cells from scRNA-seq data by fifty_fifty ▴ 60
thank you. This is exactly what I was looking for
Answer: Search RCSB with a list of protein names? by Mensur Dlakic ★ 25k
This is not the most elegant solution, but it should work with previous suggestions. In this remote directory: http://ftp.wwpdb.org/p…
Answer: Automate the Splitting of a VCF File by Sample (bcftools) by Ram 40k
The manual says you can split samples out at once using the `+split` plugin. So, `bcftools +split -Oz -o <PATH> file.vcf.gz` should do the …
Comment: differences between trajectories in conditions with Monocle3 or other tools by Amitm ★ 2.2k
Phate (or Monocle) doesn't do UMAP. If you have done UMAP already (using seurat) then you could use the cell barcode to UMAP cluster label …
Comment: Error: cannot open file 2 for reading From Cufflinks Version 2.2.1 When Attempti by Y • 0
I figured out how to make it work. The bams have to be comma separated not just by space: cd "${input_directory_with_associated_bam_fi…
Comment: Search RCSB with a list of protein names? by Joseph • 0
Hey, this is so close to what I'm looking for - I clarified in my edit. This is a great way to batch download lots of PDBs in RCSB by their…
Comment: Search RCSB with a list of protein names? by Joseph • 0
This is a really neat package, but I don't think it does exactly what I want, so I've clarified my question. This seems like it grabs a PD…
Comment: How to get the gft file to run velocyto for velocity analysis? by Chris ▴ 200
Yes, thank you! I figured it out but I got an error: velocyto run10x -m Hg38_rmsk.gtf WT/outs /cellranger/reference/refdata-cellranger…
Comment: How to get the gft file to run velocyto for velocity analysis? by bk11 ★ 1.3k
You can get from here- [UCSC][1]. Just click on get output botton. [1]: https://genome.ucsc.edu/cgi-bin/hgTables?hgsid=611454127_NtvlaW…
Answer: Search RCSB with a list of protein names? by bk11 ★ 1.3k
You can use `Bio3D` an R Package for this. [http://thegrantlab.org/bio3d_v2/tutorials/installing-bio3d][1] [http://thegrantlab.org/b…
Comment: Search RCSB with a list of protein names? by GenoMax 134k
You can download various types of bulk data files from RCSB here: https://www.rcsb.org/docs/programmatic-access/file-download-services You…
Comment: How to perform hypothesis testing on contingency tables and compare with the nul by RK • 0
Thank you so much
Comment: How to perform hypothesis testing on contingency tables and compare with the nul by Jean-Karim Heriche 26k
So just do a regular chi-squared test as I explained above. The null hypothesis is that there are as many mutated/unmutated trinucleotides …
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