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News: Cfp: Camda 2013 Challenge: Big Data In Life Sciences
ngs conference
updated 9 months ago by 41k • written 10.7 years ago by ▴ 240
2
votes
0
replies
2.9k
views
News: 2nd Edition of the Biostar Handbook. New online course starts now.
biostar-handbook
updated 6 months ago by 41k • written 4.9 years ago by 99k
4
votes
0
replies
2.8k
views
News: Wed 9/25 On-Line, Live Tutorial For Integrated Genome Browser
visualization ChIP-seq RNA-seq igv genome-browser
updated 9 months ago by 41k • written 10.2 years ago by ★ 2.4k
3
votes
0
replies
2.8k
views
News: DNA Variant Calling Workshop
next-gen SNP
updated 8 months ago by 41k • written 7.5 years ago by ▴ 460
6
votes
1
reply
2.8k
views
News: "Oxford University Press to Publish NAR Genomics and Bioinformatics"
journal
updated 6 months ago by 41k • written 4.6 years ago by 158k
7
votes
0
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2.8k
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News: Correction for "A benchmark for RNA-seq quantification pipelines"
RNA-seq
updated 8 months ago by 41k • written 7.5 years ago by ▴ 70
4
votes
4
replies
2.8k
views
News: Join The Dnanexus Developer Program
api cloud
updated 9 months ago by 41k • written 10.5 years ago by ▴ 30
5
votes
1
reply
2.8k
views
News: Canadian Bioinformatics Workshops Series Announced For 2014
training
updated 9 months ago by 41k • written 10.0 years ago by 20k
4
votes
0
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2.8k
views
News: Python for Scientists - FREE Ebook from O'Reilly
python Data-Analysis
updated 8 months ago by 41k • written 8.2 years ago by ★ 2.2k
6
votes
1
reply
2.8k
views
News: GMOD Online Training 2014 coming up
galaxy chado gmod annotation
updated 9 months ago by 41k • written 9.6 years ago by 11k
0
votes
0
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2.8k
views
News: course: Advanced R Programming. Berlin
R
updated 6 months ago by 41k • written 5.9 years ago by ★ 2.4k
2
votes
0
replies
2.7k
views
News: WORKSHOP - Introduction to Python for biologists
next-gen python SNP RNA-Seq
updated 7 months ago by 41k • written 6.7 years ago by ▴ 110
1
vote
0
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2.7k
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News: Workshop: Oxford Nanopore MinION Sequencing - Data Handling, Analysis and Applications, 1 November 2016, Edinburgh
Oxford-Nanopore training minION
updated 8 months ago by 41k • written 7.2 years ago by ★ 3.7k
0
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0
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2.7k
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News: LAST CALL: Hands-On NGS Data Analysis Workshops 2014
NGS microRNA workshop RNA-Seq
updated 9 months ago by 41k • written 9.4 years ago by 10k
0
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3
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2.7k
views
News: Physalia-courses: 16S rRNA gene Metabarcoding Workshop
RNA-seq sequencing SNP gene sequence
updated 7 months ago by 41k • written 7.1 years ago by ★ 2.4k
0
votes
0
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2.7k
views
News: Call-for-Papers in Epigenomics (BMRI, impact factor 2.7)
epigenomics papers
updated 9 months ago by 41k • written 9.2 years ago by • 0
6
votes
0
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2.7k
views
News: Broad Releases Fastg Multiple Seq Assembly Format
FASTG reference-format
updated 9 months ago by 41k • written 11.0 years ago by ★ 5.2k
0
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0
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2.7k
views
News: Workshops in Bioinformatics in 2019
assembly R RNA-Seq Python
updated 6 months ago by 41k • written 4.9 years ago by ★ 2.4k
8
votes
0
replies
2.7k
views
News: Plos Computational Biology: Translational Bioinformatics
publications plos
updated 9 months ago by 41k • written 10.7 years ago by 9.7k
14
votes
11
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2.7k
views
6 follow
News: Announcing bioSyntax: Syntax highlighting for biological files
computational-biology
updated 6 months ago by 41k • written 5.9 years ago by ▴ 170
8
votes
8
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2.7k
views
News: Coronavirus Genome Analysis: a new volume in the Biostar Handbook
biostar-handbook education
updated 6 months ago by 41k • written 3.8 years ago by 99k
2
votes
6
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2.7k
views
News: Master in integrated systems biology / Luxembourg
systems-biology Masters-course
updated 6 months ago by 41k • written 6.4 years ago by ▴ 130
1
vote
0
replies
2.7k
views
News: Genomic Data Visualization and Interpretation Workshop
Bioconductor ggplot GenVisR RNA-Seq R
updated 6 months ago by 41k • written 6.4 years ago by ★ 2.4k
4
votes
5
replies
2.7k
views
News: Kover will provide support via Biostars
kmer kover machine-learning
updated 8 months ago by 41k • written 7.5 years ago by ▴ 90
3
votes
0
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2.6k
views
News: SeqAhead - COST - Bioinformatics for Non-Coding RNAs: State-of-the-art Training Workshop: 30/6-3/7/2014, Athens, Greece
RNA-Seq workshop lncRNA microRNA
updated 9 months ago by 41k • written 9.5 years ago by ★ 1.3k
3
votes
1
reply
2.6k
views
News: Ngs Session At Biocomp Bg 2012 Conference!
next-gen-sequencing
updated 9 months ago by 41k • written 11.6 years ago by ▴ 50
1
vote
0
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2.6k
views
News: Bioconductor/R Workshop For High-Throughput Data Analysis (Web Version)
microarray bioconductor online next-gen
updated 9 months ago by 41k • written 10.2 years ago by ▴ 10
6
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0
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2.6k
views
News: New Methods Section In Plos Computational Biology
publications plos
updated 9 months ago by 41k • written 10.8 years ago by 18k
8
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1
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2.6k
views
News: An Interesting Article On Bioinformatics Education With Some Press For Biostar
meta biostars
updated 9 months ago by 41k • written 10.4 years ago by 11k
2
votes
1
reply
2.6k
views
News: Workshop: Programming For Evolutionary Biology
programming RNA-seq
updated 9 months ago by 41k • written 10.9 years ago by 10k
2
votes
2
replies
2.6k
views
News: ENCODE 2015: Research Applications and Users Meeting
workshop mouse-encode encode
updated 8 months ago by 41k • written 8.5 years ago by 35k
7
votes
4
replies
2.6k
views
News: Boston Ma Us Area Folks: Software Carpentry Workshop For Women In Science Coming Up
python training
updated 9 months ago by 41k • written 10.7 years ago by 11k
13
votes
8
replies
2.6k
views
News: NCBI is going to eliminate GI identifiers
ncbi GI
updated 8 months ago by 41k • written 7.7 years ago by ★ 2.9k
6
votes
2
replies
2.5k
views
News: RNA-Seq Data Analysis Workshop in Berlin, Germany (full)
NGS RNA-Seq workshop
updated 7 months ago by 41k • written 7.0 years ago by 10k
2
votes
0
replies
2.5k
views
News: Primer-BLAST can now design primers for a group of related target sequences!
primer-blast blast
updated 9 months ago by 41k • written 3.2 years ago by 136k
3
votes
6
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2.5k
views
News: Brief Getting Started with Broad Firecloud tutorial posted
RNA-Seq
updated 8 months ago by 41k • written 7.4 years ago by 26k
5
votes
1
reply
2.5k
views
News: Advanced Course: R programming and development 15-16. January 2015 (Thursday-Friday), EMBL Heidelberg
programming course R
updated 9 months ago by 41k • written 9.1 years ago by ★ 1.7k
2
votes
2
replies
2.5k
views
News: Interview Dealing with RADseq data: some tips from our instructors
NGS RADseq
updated 6 months ago by 41k • written 6.1 years ago by ★ 2.4k
3
votes
2
replies
2.5k
views
News: Samtools/htslib v1.2 released
htslib samtools bcftools
updated 8 months ago by 41k • written 8.8 years ago by 104k
3
votes
1
reply
2.5k
views
News: The 2014 Nucleic Acids Research Database Issue
database
updated 9 months ago by 41k • written 9.9 years ago by 158k
15
votes
4
replies
2.5k
views
News: Call For Nominations: 2013 Benjamin Franklin Award
benjamin-franklin-award award
updated 9 months ago by 41k • written 10.8 years ago by 158k
2
votes
1
reply
2.5k
views
News: RNAseq data analysis with R/ Bioconductor - ONLINE COURSE
R RNA-Seq Bioconductor
updated 6 months ago by 41k • written 3.7 years ago by ★ 2.4k
0
votes
5
replies
2.5k
views
News: Workshop: Data manipulation and visualization with Python
next-gen genome SNP sequence
updated 7 months ago by 41k • written 7.1 years ago by ★ 2.4k
2
votes
0
replies
2.5k
views
News: Summer School in Bioinformatics & NGS Data Analysis
NGS summer-school ChIP-seq RNA-seq DNA-seq
updated 8 months ago by 41k • written 7.5 years ago by 4.2k
1
vote
1
reply
2.5k
views
News: Benefits of DNA Testing - Xcode Life sciences provides preventive healthcare solution
personal-genomics genetic-testing
updated 11 months ago by 41k • written 8.5 years ago by • 0
0
votes
2
replies
2.5k
views
News: PART FUNDED SCHOLARSHIPS - Coding, data management, and Shiny applications using RStudio for evolutionary biologists and ecologists - May 2017
Rstudio R Shiny
updated 6 months ago by 41k • written 6.7 years ago by ▴ 110
6
votes
0
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2.5k
views
News: http://crackingthebiocode.github.io : Profiles of Computational Biologists & Bioinformaticians
career
updated 9 months ago by 41k • written 9.2 years ago by 158k
2
votes
0
replies
2.5k
views
News: Connecting NGS Researcher Directly to Data Analysis Provider: New Genohub Service Launched
NGS-data-analysis bioinformatics-services
updated 9 months ago by 41k • written 9.6 years ago by ▴ 640
1
vote
0
replies
2.5k
views
News: Course: Gene set enrichment and pathway analysis in R . Berlin 12-16 March 2018
Pathway-Analysis R Gene
updated 6 months ago by 41k • written 6.1 years ago by ★ 2.4k
1
vote
1
reply
2.5k
views
News: R package PopGenome: http://popgenome.weebly.com/
R population-genomics popgenome VCF
updated 8 months ago by 41k • written 8.6 years ago by ▴ 50
1,000 results • Page 3 of 20
Recent Votes
A: Compute mean depth coverage for exome data with paired end, overlapping, feature
C: Compute mean depth coverage for exome data with paired end, overlapping, feature
Answer: How to use Nextflow to call scripts from different environments?
Comment: An issue with gtf file (ballgownrsem)
Answer: how to calculate duplicated reads in single cell RNA 10x genomics data
What Are The Bioinformatics-Related Aliases Or Functions In Your Bashrc
A: Understand Samtools View Output
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Comment: Need help to find FASTA sequence from dbSNP by syedahumairagillani • 0
Thank you for your response. Actually I am looking for fasta sequence of SNP as I shared via image, rather than just location. Would you p…
Answer: Calculate GC content for entire chromosome by colindaven 5.8k
In the meantime there is also seqtk gc https://github.com/lh3/seqtk seqtk gc Usage: seqtk gc [options] <in.fa> …
Comment: Building reference dbSNP file using WGS samples by analyst ▴ 10
I have employed your above suggested approach for BQSR (latter one). I will try former approach too (that does not require reference vcf fi…
Comment: An issue with gtf file (ballgownrsem) by cucindarko51 • 0
Thank you! After using this tool, I figured out that **ballgownrsem** can be run successfully only with GFF files.
Answer: Execute R command on specific termimal by ATpoint 78k
This is not how HPCs work. Things do not happen automatically and independent of the job scheduler. If you want to work interactively o…
Comment: Need help to find FASTA sequence from dbSNP by GenoMax 136k
Using [**EntrezDirect**][1] you can find the location of this SNP: $ esearch -db snp -query rs1815739 | esummary | xtract -pattern Doc…
Comment: Building reference dbSNP file using WGS samples by analyst ▴ 10
For variant calling I followed following steps: **Step 1** I first made a vcf file to be used for quality score recalibration later > c…
Comment: Need help to find FASTA sequence from dbSNP by Pierre Lindenbaum 158k
what does it mean ?
Answer: How to use Nextflow to call scripts from different environments? by ATpoint 78k
You can specify conda environments and containers directly in the modules, see for example: https://github.com/nf-core/modules/blob/master…
Comment: Issues while running blastx by GenoMax 136k
> ~/Downloads/uniprot_sprot.dat `dat` files are not blast index ready. You should download the `fasta` format file and create your own bla…
Comment: Strandedness of RNA-seq results by charles.feigin • 0
Hi, coming here for the same reason. Libraries prepared with the Illumina Stranded mRNA Prep kit (dUTP-based). In hisat2 with --rf I get <…
Comment: How to interpret the discrepancy of assignment rate in featurecounts using forwa by charles.feigin • 0
I'm having this exact same problem. PolyA RNA-Seq library, running with --fr in hisat2 gives a high fraction of concordant single-mappers, …
Comment: How to create a mutation frequency comparison plot? by saipra003 ▴ 10
That's awesome thank you. Found out after a bit of researching that this is called a `Cleveland Dot Plot` if anyone else comes across this.
Comment: Cell ranger multi for demultiplexing FB files and GEX files by GenoMax 136k
Demultiplexing is typically done using Illumina software? Have you done this already?: https://www.10xgenomics.com/support/software/cell-ra…
Comment: bbmap split paired-end reads back into separated fastq files? by GenoMax 136k
If you simply want to merge "technical" sequencing replicates then you can do the following cat file1_R1.fastq file1_R1.fastq > merged…
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