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News: Samtools/htslib v1.2 released
htslib samtools bcftools
updated 11 days ago by 38k • written 8.1 years ago by 103k
8
votes
0
replies
2.4k
views
News: De Novo Genome Assembly Using Next-Generation Sequence Data (8 - 10 February 2016)
Assembly Workshop DNA-Seq
updated 6 months ago by 38k • written 7.5 years ago by 9.9k
1
vote
1
reply
2.4k
views
News: Benefits of DNA Testing - Xcode Life sciences provides preventive healthcare solution
personal-genomics genetic-testing
updated 10 weeks ago by 38k • written 7.8 years ago by • 0
20
votes
3
replies
2.3k
views
News: Nature Comment: Core services: Reward bioinformaticians
career-path
updated 9 months ago by 38k • written 8.0 years ago by ★ 2.2k
2
votes
0
replies
2.3k
views
News: Connecting NGS Researcher Directly to Data Analysis Provider: New Genohub Service Launched
NGS-data-analysis bioinformatics-services
updated 20 days ago by 38k • written 8.9 years ago by ▴ 640
6
votes
1
reply
2.3k
views
News: FastQC Version 0.11.1 released
genome next-gen-sequencing
updated 20 days ago by 38k • written 8.8 years ago by ★ 2.2k
0
votes
0
replies
2.3k
views
News: Apply to Penn State's Online Graduate Certificate in Applied Bioinformatics
learn-bioinformatics-online genome-sequencing
updated 7 months ago by 38k • written 7.3 years ago by ▴ 10
25
votes
7
replies
2.3k
views
6 follow
News: Who qualifies to be a bioinformatician?
resume bioinformatician vc
updated 8 months ago by 38k • written 7.9 years ago by 153k
3
votes
1
reply
2.3k
views
News: Variathon V0.1 - 2013 - Comparing Existing Or New Pipelines For Variant Calling In Terms Of Accuracy And Efficiency
ngs conference
updated 4 weeks ago by 38k • written 10.1 years ago by 153k
15
votes
4
replies
2.3k
views
News: Call For Nominations: 2013 Benjamin Franklin Award
benjamin-franklin-award award
updated 4 weeks ago by 38k • written 10.1 years ago by 153k
0
votes
0
replies
2.3k
views
News: Total RNA Commercial Kit Comparison Study
microarray NGS RNA-Seq qPCR
updated 17 days ago by 38k • written 8.3 years ago by ▴ 40
2
votes
0
replies
2.3k
views
News: Primer-BLAST can now design primers for a group of related target sequences!
primer-blast blast
updated 6 weeks ago by 38k • written 2.5 years ago by 127k
3
votes
0
replies
2.3k
views
News: Samtools/htslib/bcftools 1.1 released
htslib samtools
updated 18 days ago by 38k • written 8.5 years ago by 103k
4
votes
0
replies
2.2k
views
News: 2nd UK Bioinformatics Student Symposium on 7 Oct '15 at TGAC, Norwich
symposium
updated 5 months ago by 38k • written 7.6 years ago by ▴ 100
4
votes
0
replies
2.2k
views
News: Upcoming Workshop: Ensembl Perl APIs
ensembl APIs Perl workshops
updated 17 days ago by 38k • written 8.4 years ago by ★ 5.2k
1
vote
0
replies
2.2k
views
News: APPLICATION DEADLINE IS DECEMBER 5 for Penn State Applied Bioinformatics Program – 100% Online
education courses online
updated 17 days ago by 38k • written 8.4 years ago by ▴ 10
0
votes
0
replies
2.2k
views
News: DEADLINE 18th of March: 2nd Annual Training Course on Viral Bioinformatics and Genomics
virus genomics virology
updated 8 months ago by 38k • written 7.2 years ago by ★ 3.0k
18
votes
3
replies
2.2k
views
News: LAST CALL: Next-Generation Sequencing Data Analysis: A Practical Introduction (Frankfurt, Germany) - 2 seats left
DNA-Seq NGS Workshop Variant-Calling
updated 8 months ago by 38k • written 6.1 years ago by 9.9k
0
votes
2
replies
2.2k
views
News: MinION Community Meeting: Thursday Dec 3rd (now live)
minion
updated 7 months ago by 38k • written 7.3 years ago by 97k
1
vote
1
reply
2.2k
views
News: Bioinformatics for Cancer Genomics Workshop
Cancer-Genomics
updated 8 months ago by 38k • written 7.2 years ago by ▴ 30
2
votes
0
replies
2.2k
views
News: The NAR annual Web Server Issue is here..
web-servers
updated 5 days ago by 38k • written 7.7 years ago by ★ 5.0k
4
votes
0
replies
2.2k
views
News: Google Genomics and Broad Institute Team Up to Tackle Genomic Data
google broad gatk
updated 3 months ago by 38k • written 7.8 years ago by ★ 5.2k
0
votes
0
replies
2.2k
views
News: Workshop on Computational Approaches for Cancer, Supercomputer 2015 meeting in Austin, TX
meeting supercomputer cancer
updated 5 months ago by 38k • written 7.6 years ago by 26k
0
votes
1
reply
2.1k
views
News: Nature Index: Novogene is teaming up with laboratories worldwide for life sciences and human health research
NGS Nature Sequencing
updated 3 months ago by 38k • written 12 months ago by ▴ 240
4
votes
1
reply
2.1k
views
News: ENCODE Users' Meeting
encode ucsc conference functional-genomics ensembl
updated 7 months ago by 38k • written 7.8 years ago by 23k
0
votes
0
replies
2.1k
views
News: Coursera Bioinformatics Specialization will start in August 31 2015
Coursera
updated 5 months ago by 38k • written 7.6 years ago by ★ 2.2k
0
votes
0
replies
2.1k
views
News: Second Annual International Environmental Omics conference to be held in Liverpool, UK. September 15th-18th
Conference
updated 20 days ago by 38k • written 8.7 years ago by ★ 3.9k
3
votes
0
replies
2.1k
views
News: 2013 Gmod Community Survey
gff3 galaxy biomart
updated 4 weeks ago by 38k • written 10.1 years ago by ▴ 280
7
votes
2
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2.1k
views
News: Annotation of Zebrafish pri-miRNAs promoters and CAGE-seq detected active Drosha processing events.
Drosha-processing moRNAs pri-miRNAs zebrafish
updated 7 months ago by 38k • written 7.3 years ago by ★ 2.3k
0
votes
0
replies
2.1k
views
News: Conference Announcement - Camda 2014
conference
updated 23 days ago by 38k • written 9.0 years ago by ▴ 240
4
votes
0
replies
2.1k
views
News: Rna-Seq Workshop In Oslo - Seats Available
RNA-seq
updated 24 days ago by 38k • written 9.1 years ago by ▴ 60
3
votes
3
replies
2.1k
views
News: Innocentive Challenge: Identify Organisms From A Stream Of Dna Sequences And Get $1,000,000
ngs
updated 4 weeks ago by 38k • written 9.9 years ago by ▴ 830
2
votes
0
replies
2.1k
views
News: The 2nd Plant Genomics Congress London 12 & 13 May 2014
ngs plant-genomics plant-science
updated 20 days ago by 38k • written 9.0 years ago by ▴ 20
4
votes
1
reply
2.1k
views
News: 2014 ISCB Wikipedia Article Competition announcement
ISCB competition Wikipedia
written 8.6 years ago by ★ 2.0k
6
votes
2
replies
2.0k
views
News: Galaxy-specific Biostar Instance
galaxy biostars
updated 5 weeks ago by 38k • written 8.9 years ago by ▴ 380
4
votes
3
replies
2.0k
views
News: India Recently Started Personal Genome Profiling, Commercially.
genome-profiling
updated 4 weeks ago by 38k • written 9.9 years ago by ▴ 960
9
votes
0
replies
2.0k
views
News: Commercial advertising on Biostars
meta biostars advertising
updated 18 days ago by 38k • written 8.5 years ago by 97k
6
votes
0
replies
2.0k
views
News: Biostars on Google Summer of Code 2015
meta biostars
updated 10 months ago by 38k • written 8.1 years ago by 97k
0
votes
0
replies
2.0k
views
News: Predict Protein Expression in Bacteria
sequence Assembly genome
updated 7 months ago by 38k • written 7.4 years ago by ▴ 40
8
votes
0
replies
2.0k
views
News: A Call To Create Listings Of The Best Review Papers
papers
updated 4 weeks ago by 38k • written 10.6 years ago by 97k
10
votes
7
replies
2.0k
views
News: Free draft copy of book on bioinformatics tools
alignment Assembly RNA-seq next-gen
updated 9 weeks ago by 38k • written 7.9 years ago by ★ 1.1k
0
votes
0
replies
2.0k
views
News: International Conference on Data Mining, Multimedia, Image Processing and their Applications (ICDMMIPA2015)
conference wireless-communication
updated 6 weeks ago by 38k • written 7.9 years ago by • 0
1
vote
0
replies
2.0k
views
News: New start-up for NGS analysis GxGenomics- Google cloud based analysis pipelines
ChIP-Seq next-gen RNA-Seq Assembly
updated 6 weeks ago by 38k • written 7.0 years ago by ▴ 30
4
votes
1
reply
1.9k
views
News: Mark2Cure launches tool to help crowd-source curation of the biomedical literature
crowd-sourcing
updated 3 months ago by 38k • written 8.2 years ago by 20k
0
votes
9
replies
1.9k
views
News: Practical Genomics: From Biology to Biostatistics Workshop (Baltimore, MD)
workshop
updated 20 days ago by 38k • written 8.7 years ago by 10k
0
votes
2
replies
1.9k
views
News: Seqnews.Net: Discover And Share News On Next-Generation Sequencing
next-gen-sequencing
updated 4 weeks ago by 38k • written 10.3 years ago by 9.9k
0
votes
0
replies
1.9k
views
News: MAY 10 DEADLINE: Apply to Penn State’s Grad Certificate in Applied Bioinformatics – 100% ONLINE
graduate-certificate
updated 6 days ago by 38k • written 8.0 years ago by ▴ 10
2
votes
1
reply
1.9k
views
News: Igb 8 Webinar Starts At 1 Pm Eastern
visualization genome-browser bam rna-seq
updated 26 days ago by 38k • written 9.4 years ago by ★ 2.3k
0
votes
1
reply
1.9k
views
News: Call for Book Chapter- Essentials of Bioinformatics Vol. I-III (Springer)
medicine sequencing agriculture
updated 3 months ago by 38k • written 5.5 years ago by • 0
3
votes
0
replies
1.9k
views
News: Big Data in Healthcare Symposium, Luxembourg, 28/29 October 2015
big-data conference medicine health
updated 6 months ago by 38k • written 7.6 years ago by ▴ 130
460 results • Page 3 of 10
Recent Votes
Answer: multiallelic variants
Answer: LIMMA calculates identical adj.P.Val for different proteins from proteomics
Comment: Hard clip fastq
Answer: Hard clip fastq
Answer: Hard clip fastq
Answer: Hard clip fastq
Comment: Protein name in GenBank
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Popular Question to sharmatina189059 ▴ 110
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Recent Replies
Answer: Somatic truth set by samuel ▴ 180
I think I have found an naswer to my own question. Should anyone have the same question as of March 2023 the relevant data and information…
Answer: GetBM - GERP conservation score for GRCm39 by Kyle • 0
Final solution thanks to Ben's help:: # convert df to Grange. snp_gr <-makeGRangesFromDataFrame(BM_SNPs, seqnames.field = "seqnam…
Comment: GetBM - GERP conservation score for GRCm39 by Kyle • 0
Perfect answer, thanks Ben!
Answer: MapSplice2 gives error if the thread count (-p value) is greater than 2 by vishal.koparde ▴ 10
Any updates??
Comment: how to know what adapter sequences to trim for RNA-seq? by lunarskye222 • 0
Do you happen to know if the middle part of this udi barcode (GATCGGAAGAGCACACGTCTGAACTCCAGTCACGTCTACATATCTCG) is also part of the TruSeq a…
Comment: Hard clip fastq by GenoMax 127k
If you simply want the reads to be compatible in length then do not adapter trim.
Comment: Hard clip fastq by samuel ▴ 180
@ATpoint, so no adapter trimming first? Just trim the raw fastq?
Answer: Confused on strandedness, what are antisense transcripts? by dsull ★ 4.0k
RNA pol always transcribes 5' -> 3'. This has nothing to do with +/-. Think of it on the DNA level: If the mRNA made is the same sequenc…
Comment: Protein name in GenBank by GenoMax 127k
If you must do this programmatically then collect all cases where things differ in order of words (or number of words) like the example abo…
Answer: Hard clip fastq by GenoMax 127k
You can also use `reformat.sh` from [**BBMap suite**][1] as follows reformat.sh -Xmx2g in1=R1.fq.gz in2=R2.fq.gz out1=R1_trim.fq.gz …
Answer: Hard clip fastq by ATpoint 70k
Use `seqtk trimfq`. It makes sense to trim first to your desired length and then run identical downstream processing for a fair comparison.…
Comment: Protein name in GenBank by Mensur Dlakic ★ 23k
I think you either take time to do it properly, or you will end up missing some proteins. BLAST sequence search, even on 1500 genomes, can …
Comment: Log2 FC Threshold by ATpoint 70k
Since OP is using GEO2R which uses limma the appropriate function (need to run manually, GEO2R does not support) is `limma::treat()` rather…
Answer: Adding median value to VlnPlot in Seurat by Ming Tommy Tang ★ 2.9k
If you know ggplot2, you can `get_expression_data` function in here https://divingintogeneticsandgenomics.rbind.io/post/how-to-do-gene-corr…
Answer: how to know what adapter sequences to trim for RNA-seq? by Ming Tommy Tang ★ 2.9k
You may use fastp which detect adaptors by itself https://github.com/OpenGene/fastp#adapters
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