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898 results • Page 5 of 18
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News: Webinar on fast and accurate DNA variant calling on 26 Apr 2017
variant-calling SNP gatk strand-ngs alignment
updated 11 months ago by 43k • written 7.0 years ago by ▴ 70
5
votes
3
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News: Top GitHub repos for biomedicine
open-source software GitHub
updated 11 months ago by 43k • written 5.3 years ago by ▴ 50
0
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0
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News: RNA-Seq Data Analysis Workshop in Leipzig, Germany (23 - 26 October 2018)
hands-on RNA-Seq workshop
updated 11 months ago by 43k • written 5.9 years ago by 11k
0
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0
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News: Sequel System Data Release: Iso-Seq Results for Hummingbird and Zebra Finch Brain Tissue
Iso-Seq Pacific-Biosciences SMRT-Sequencing
updated 11 months ago by 43k • written 6.6 years ago by • 0
0
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0
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News: Introduction to Mixed (Hierarchical) models for biologists using R (IMBR01)
R
updated 11 months ago by 43k • written 6.0 years ago by ▴ 60
0
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0
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News: Course: Exploratory multivariate analysis and visualization of genomic data. Berlin 19-23 March 2018
Dataviz snp Multivariate-Analysis
updated 11 months ago by 43k • written 6.4 years ago by ★ 2.5k
0
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0
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News: Course: Applied Statistics and Bioinformatics with R and Bioconductor. (Berlin, 22-26 January 2018)
BioConductor Statistics R
updated 11 months ago by 43k • written 6.5 years ago by ★ 2.5k
0
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0
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News: 16S Microbial Metabarcoding
R Metabarcoding
updated 11 months ago by 43k • written 5.5 years ago by ★ 2.5k
2
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0
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1.4k
views
News: Community Feedback - OBF mailing list issues
Biojava Biopython EMBOSS BioPerl Bioruby
updated 11 months ago by 43k • written 6.3 years ago by ★ 2.2k
1
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0
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1.4k
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News: Workshop: Introduction to Linux and workflows for biologists
Assembly snp blast alignment
updated 11 months ago by 43k • written 7.1 years ago by ★ 2.5k
3
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0
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1.4k
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News: NIH Strategic Plan for Data Science
nih data-science
updated 11 months ago by 43k • written 6.1 years ago by 141k
0
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0
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News: Course: Molecular phylogenies in biodiversity. 9-13 April 2018 in Berlin (Germany)
blast R alignment
updated 11 months ago by 43k • written 6.3 years ago by ★ 2.5k
0
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0
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1.4k
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News: Speciation Genomics Workshop
genome snp speciation next-gen
updated 11 months ago by 43k • written 5.9 years ago by ★ 2.5k
2
votes
3
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1.4k
views
News: Bio-On-Magnetic-Beads (BOMB): Open platform for high-throughput nucleic acid extraction and manipulation
rna-extraction dna-extraction rna-seq
updated 11 months ago by 43k • written 5.6 years ago by ▴ 20
0
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0
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1.4k
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News: Hackathon on how to use biodata to improve health outcomes
disease drugs genomics open-targets
updated 11 months ago by 43k • written 5.9 years ago by ★ 5.2k
0
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3
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News: :: FINAL CALL :: A Practical Introduction to NGS Data Analysis (Nov 29 - Dec 1, 2023 in Munich, Germany) - only 2 seats left
DNA-Seq NGS RNA-Seq Workshop
5 months ago by David Langenberger 11k
0
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1
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News: Webinar on Leukocyte immunobiology by Dr. Mario Deng, Professor of Medicine, UCLA on 9 Aug 2017, 8am PST
UCLA transcriptome-analysis RNA-Seq Strand-NGS
updated 11 months ago by 43k • written 6.8 years ago by ▴ 70
1
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0
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News: Metagenomics course. 9-13 April 2018
omics Metatranscriptomics metagenomics
updated 11 months ago by 43k • written 6.2 years ago by ★ 2.5k
0
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0
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1.4k
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News: R without fear: our interview to Dr Ken Aho
biostatistics R statistics
updated 11 months ago by 43k • written 6.9 years ago by ★ 2.5k
3
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0
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1.4k
views
News: Analysis of single cell RNA-seq data - Berlin 23 -27 March 2020
scRNA-seq RNA-Seq
updated 10 months ago by 43k • written 4.8 years ago by ★ 2.5k
1
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0
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1.4k
views
News: Free e-learning from EMBL-EBI
free-courses EMBL EBI e-learning
updated 11 months ago by 43k • written 5.9 years ago by ★ 4.0k
2
votes
2
replies
1.4k
views
News: GeNets: a unified web platform for network-based genomic analyses
networks pathways RNA-Seq visualization
updated 11 months ago by 43k • written 5.9 years ago by ★ 5.2k
0
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0
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1.4k
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News: Workshop: RAD-seq data analysis (Berlin, 2-6 July 2018 )
RAD-seq SNP Stacks2.0
updated 11 months ago by 43k • written 5.9 years ago by ★ 2.5k
2
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1
reply
1.4k
views
News: of the Galaxy: 17.05 Release, Galaxy Community Conference, and more
event galaxy paper
updated 11 months ago by 43k • written 6.9 years ago by ▴ 610
0
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0
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1.4k
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News: Physalia-courses: Upcoming courses
SNP next-gen R RNA-Seq
updated 11 months ago by 43k • written 7.0 years ago by ★ 2.5k
1
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2
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1.4k
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News: Webinar on Diagnosis of Rare Diseases using NGS Based Multi-gene Testing- Case studies by Dr.Aparna Ganapathy on 18 Apr 2018
variant-calling rare-disease dna-seq strand-ngs
updated 11 months ago by 43k • written 6.1 years ago by ▴ 70
4
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0
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News: ONLINE course - Metagenomics, metatranscriptomics, and multi'omics for microbial community studies
next-gen-sequencing
updated 10 months ago by 43k • written 4.1 years ago by ★ 2.5k
0
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0
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News: Training in Bioinformatics for Beginners @ NIH, USA, Jan 15-18,2019
Beginners Training
updated 11 months ago by 43k • written 5.5 years ago by ▴ 140
0
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0
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1.4k
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News: Joint webinar by Agilent Technologies and Strand Life Sciences on 'Analysis of Variants using GeneSpring GX'
agilent variant-analysis strand genespring
updated 11 months ago by 43k • written 6.4 years ago by ▴ 70
0
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0
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1.4k
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News: New bioinformatics courses at Edinburgh Genomics
Training R Linux RNA-Seq Workshop
updated 11 months ago by 43k • written 5.2 years ago by ▴ 40
0
votes
0
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1.4k
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News: BioSB Course Pattern Recognition (5th edition), 25-29 September 2017, Amsterdam, the Netherlands
machine-learning
updated 11 months ago by 43k • written 6.8 years ago by ▴ 10
0
votes
0
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1.4k
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News: Metabarcoding Workshop. 4-8 March
metabarcoding next-gen
updated 11 months ago by 43k • written 5.3 years ago by ★ 2.5k
2
votes
2
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1.4k
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News: Course: Applied Statistics and Bioinformatics with R and Bioconductor. (Berlin, 22-26 January 2018)
R next-gen-sequencing
updated 11 months ago by 43k • written 6.4 years ago by ★ 2.5k
1
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0
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1.4k
views
News: Advanced Sequencing Technologies & Bioinformatics Analysis Course at CSHL: November 3 - 15, 2020
course sequencing workshop
updated 10 months ago by 43k • written 4.3 years ago by 20k
0
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0
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1.4k
views
News: Introduction to Python for biologists (IPYB06)
genome RNA-Seq next-gen
updated 11 months ago by 43k • written 5.0 years ago by ▴ 60
0
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0
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1.4k
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News: eDNA Metabarcoding Workshop in Canada
R eDNA next-gen
updated 11 months ago by 43k • written 5.9 years ago by ★ 2.5k
0
votes
0
replies
1.4k
views
News: Hands-on machine learning workshop for biomedical data
genome machine-learning
updated 11 months ago by 43k • written 5.8 years ago by ▴ 10
3
votes
1
reply
1.4k
views
News: Ensembl in Google Summer of Code
Ensembl Internship Google-Summer-of-Code GSOC
updated 11 months ago by 43k • written 7.1 years ago by 23k
0
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0
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1.4k
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News: Summer Bioinformatics Training Program - Louisiana Biomedical Research Network
genome RNA-Seq gene next-gen-sequencing
updated 11 months ago by 43k • written 5.9 years ago by ▴ 340
0
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1
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1.4k
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News: Online Workshop - A Practical Introduction to NGS Data Analysis (May 27-29,2020)
NGS DNA-seq Workshop
updated 10 months ago by 43k • written 4.0 years ago by 11k
0
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0
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1.4k
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News: Webinar: Mapping the single-cell atlas of the bone marrow microenvironment
webinar RNA-Seq next-gen single-cell
updated 10 months ago by 43k • written 4.7 years ago by ▴ 450
3
votes
1
reply
1.4k
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News: GATK returns to a fully open-source license
gatk
updated 11 months ago by 43k • written 6.9 years ago by 100k
0
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0
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1.4k
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News: Powerful and Intuitive Gene Expression Visualization Tools to Interpret Biological Signals---Bulk and Single Cell Data
scRNA-Seq webinar RNA-Seq single-cell
updated 11 months ago by 43k • written 5.5 years ago by ▴ 30
0
votes
0
replies
1.3k
views
News: National Symposium on Database Development and Biocuration (April 6-7, 2018; www.genomeindia.org/nsddb)
database Biocuration curation
updated 11 months ago by 43k • written 6.2 years ago by • 0
1
vote
0
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1.3k
views
News: SNAKEMAKE course in Berlin
next-gen
updated 11 months ago by 43k • written 5.7 years ago by ★ 2.5k
0
votes
0
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1.3k
views
News: See your data in context with NCBI s updated Genome Data Viewer
bam ncbi
updated 11 months ago by 43k • written 6.1 years ago by 161k
0
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0
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1.3k
views
News: Course: Gene set enrichment and pathway analysis in R . Berlin 12-16 March 2018
R ChIP-Seq next-gen-sequencing
updated 11 months ago by 43k • written 6.3 years ago by ★ 2.5k
0
votes
0
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1.3k
views
News: Brand new bioinformatics courses at Edinburgh Genomics
metagenomics python RNA-Seq training
updated 10 months ago by 43k • written 4.8 years ago by ▴ 40
0
votes
0
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1.3k
views
News: Training in Creating Plots, Graphs and Maps using R @ NIH, USA, Mar 6 - 9, 2018
R plots maps graphs
updated 11 months ago by 43k • written 6.2 years ago by ▴ 140
0
votes
0
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1.3k
views
News: Training in Metagenomics Data Analysis @ NIH, March 12-15,2019
Metagenomics Analysis Training
updated 11 months ago by 43k • written 5.3 years ago by ▴ 140
898 results • Page 5 of 18
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Comment: downloading genomes in fasta format from accession ids
Comment: PCA plot (Suggestions Needed)
Answer: PCA plot (Suggestions Needed)
PCA plot (Suggestions Needed)
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A: Where To Download Pam50 Gene Set?
A: Where To Download Pam50 Gene Set?
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Comment: Annovar using R package by Pierre Lindenbaum 161k
duplicate of your previous question: https://www.biostars.org/p/9592646/ why using R when there are shell-based tools like VEP ? slivar , …
Comment: Trouble with Pilon installation by Lissa Cruz Saavedra • 0
Hi I am trying to install the software but I didn't find the way to clone from github. Could you help me with the pipeline of instruction…
Comment: Adding CB tag to bam file by swbarnes2 14k
I think both these programs are just adding the same tag to every line. I don't think either cares whether it's called RG or CB
Comment: PCA plot (Suggestions Needed) by swbarnes2 14k
Even if this was real data, the tiny numbers for the PC1 and PC2 indicate that the differences between the samples are all absolutely tiny.…
Comment: Creating Synthetic Sequences for a ML Model by biochugs • 0
Thanks for the input. I'll continue to think of more ideas that may be achievable.
Comment: PCA plot (Suggestions Needed) by Jeremy ▴ 890
You could also try kernel PCA, which is a non-linear form of PCA, although this will be more time-consuming.
Comment: Troubleshooting RNA-seq data with DNA contamination by DKA ▴ 40
I have unstranded RNA-seq data. Please share the tool with me, if you do not mind.
Comment: PCA plot (Suggestions Needed) by Mensur Dlakic ★ 27k
Everything that @f1f58aed said, plus that there may be no data manipulation that will give you the clusters you expected. Sometimes there a…
Answer: Creating Synthetic Sequences for a ML Model by Mensur Dlakic ★ 27k
It is a good idea, though I don't see how it would work in practice. I think you will encounter at least one additional problem on top of …
Answer: PCA plot (Suggestions Needed) by Jeremy ▴ 890
Right now, the WT samples are clustering together, but you have one mutant sample off by itself, which could be an outlier. How did you sc…
Comment: Adding CB tag to bam file by GenoMax 141k
@yokofakun had written this: https://www.biostars.org/p/336965/ https://github.com/ruqianl/appendCB may also be useful.
Comment: Troubleshooting RNA-seq data with DNA contamination by GenoMax 141k
Please post information about your tool as a `tools` category post. Don't wait/ask other users to ask you.
Comment: Adding CB tag to bam file by Maria • 0
Sorry for the delay in my answer, I got sidetracked. I am using ```samtools addreplacerg -r "@RG\tID:$cell" -o $cell.bam -h $LINE``` bu…
Answer: Troubleshooting RNA-seq data with DNA contamination by haibol2017 ▴ 10
We just developed a R package to tackle this problem. Do you have stranded or unstranded RNA-seq data contaminated with gDNA? If you wou…
Comment: How to trim transcripts using information from NCBI contamination screen report by GenoMax 141k
`bbduk.sh` can use the transcripts as input. There is a `adapters.fa` included in the `resources` directory of the distribution. You can do…
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